Examples with Edge org.gephi.graph.api.Edge used on opensource projects

Example 6 with Edge

use of org.gephi.graph.api.Edge in project gephi by gephi.

the class ClusteringCoefficientNGTest method testSpecial3UndirectedGraphClusteringCoefficient.

@Test
public void testSpecial3UndirectedGraphClusteringCoefficient() {
    GraphModel graphModel = Lookup.getDefault().lookup(GraphController.class).getGraphModel();
    UndirectedGraph undirectedGraph = graphModel.getUndirectedGraph();
    Node node1 = graphModel.factory().newNode("0");
    Node node2 = graphModel.factory().newNode("1");
    Node node3 = graphModel.factory().newNode("2");
    Node node4 = graphModel.factory().newNode("3");
    Node node5 = graphModel.factory().newNode("4");
    Node node6 = graphModel.factory().newNode("5");
    undirectedGraph.addNode(node1);
    undirectedGraph.addNode(node2);
    undirectedGraph.addNode(node3);
    undirectedGraph.addNode(node4);
    undirectedGraph.addNode(node5);
    undirectedGraph.addNode(node6);
    Edge edge12 = graphModel.factory().newEdge(node1, node2, false);
    Edge edge23 = graphModel.factory().newEdge(node2, node3, false);
    Edge edge31 = graphModel.factory().newEdge(node3, node1, false);
    Edge edge14 = graphModel.factory().newEdge(node1, node4, false);
    Edge edge25 = graphModel.factory().newEdge(node2, node5, false);
    Edge edge36 = graphModel.factory().newEdge(node3, node6, false);
    undirectedGraph.addEdge(edge12);
    undirectedGraph.addEdge(edge23);
    undirectedGraph.addEdge(edge31);
    undirectedGraph.addEdge(edge14);
    undirectedGraph.addEdge(edge25);
    undirectedGraph.addEdge(edge36);
    Graph graph = graphModel.getGraph();
    ClusteringCoefficient cc = new ClusteringCoefficient();
    ArrayWrapper[] network = new ArrayWrapper[6];
    int[] triangles = new int[6];
    double[] nodeClustering = new double[6];
    HashMap<String, Double> results = cc.computeClusteringCoefficient(graph, network, triangles, nodeClustering, false);
    double cl1 = nodeClustering[0];
    double res1 = 0.333;
    double diff = 0.01;
    assertTrue(Math.abs(cl1 - res1) < diff);
}

Example 7 with Edge

use of org.gephi.graph.api.Edge in project gephi by gephi.

the class EigenvectorCentralityNGTest method testSpecial3UndirectedGraphEigenvectorCentrlity.

@Test
public void testSpecial3UndirectedGraphEigenvectorCentrlity() {
    GraphModel graphModel = Lookup.getDefault().lookup(GraphController.class).getGraphModel();
    UndirectedGraph undirectedGraph = graphModel.getUndirectedGraph();
    Node node1 = graphModel.factory().newNode("0");
    Node node2 = graphModel.factory().newNode("1");
    Node node3 = graphModel.factory().newNode("2");
    undirectedGraph.addNode(node1);
    undirectedGraph.addNode(node2);
    undirectedGraph.addNode(node3);
    Edge edge11 = graphModel.factory().newEdge(node1, node1, false);
    Edge edge12 = graphModel.factory().newEdge(node1, node2, false);
    Edge edge23 = graphModel.factory().newEdge(node2, node3, false);
    Edge edge33 = graphModel.factory().newEdge(node3, node3, false);
    undirectedGraph.addEdge(edge11);
    undirectedGraph.addEdge(edge12);
    undirectedGraph.addEdge(edge23);
    undirectedGraph.addEdge(edge33);
    UndirectedGraph graph = graphModel.getUndirectedGraph();
    EigenvectorCentrality ec = new EigenvectorCentrality();
    double[] centralities = new double[3];
    HashMap<Integer, Node> indicies = new HashMap();
    HashMap<Node, Integer> invIndicies = new HashMap();
    ec.fillIndiciesMaps(graph, centralities, indicies, invIndicies);
    ec.calculateEigenvectorCentrality(graph, centralities, indicies, invIndicies, false, 100);
    int index1 = invIndicies.get(node1);
    int index2 = invIndicies.get(node2);
    double ec1 = centralities[index1];
    double ec2 = centralities[index2];
    assertEquals(ec1, ec2);
}

Example 8 with Edge

use of org.gephi.graph.api.Edge in project gephi by gephi.

the class EigenvectorCentralityNGTest method testDirectedStarOutEigenvectorCentrality.

@Test
public void testDirectedStarOutEigenvectorCentrality() {
    GraphModel graphModel = Lookup.getDefault().lookup(GraphController.class).getGraphModel();
    DirectedGraph directedGraph = graphModel.getDirectedGraph();
    Node firstNode = graphModel.factory().newNode("0");
    directedGraph.addNode(firstNode);
    for (int i = 1; i <= 5; i++) {
        Node currentNode = graphModel.factory().newNode(((Integer) i).toString());
        directedGraph.addNode(currentNode);
        Edge currentEdge = graphModel.factory().newEdge(firstNode, currentNode);
        directedGraph.addEdge(currentEdge);
    }
    DirectedGraph graph = graphModel.getDirectedGraph();
    EigenvectorCentrality ec = new EigenvectorCentrality();
    double[] centralities = new double[6];
    HashMap<Integer, Node> indicies = new HashMap();
    HashMap<Node, Integer> invIndicies = new HashMap();
    ec.fillIndiciesMaps(graph, centralities, indicies, invIndicies);
    ec.calculateEigenvectorCentrality(graph, centralities, indicies, invIndicies, true, 100);
    Node n1 = graph.getNode("0");
    Node n2 = graph.getNode("1");
    int index1 = invIndicies.get(n1);
    int index2 = invIndicies.get(n2);
    double ec1 = centralities[index1];
    double ec2 = centralities[index2];
    assertEquals(ec1, 0.0);
    assertEquals(ec2, 1.0);
}

Example 9 with Edge

use of org.gephi.graph.api.Edge in project gephi by gephi.

the class EigenvectorCentralityNGTest method testSpecial1DirectedEigenvectorCentrality.

@Test
public void testSpecial1DirectedEigenvectorCentrality() {
    GraphModel graphModel = Lookup.getDefault().lookup(GraphController.class).getGraphModel();
    DirectedGraph directedGraph = graphModel.getDirectedGraph();
    Node node1 = graphModel.factory().newNode("0");
    Node node2 = graphModel.factory().newNode("1");
    Node node3 = graphModel.factory().newNode("2");
    Node node4 = graphModel.factory().newNode("3");
    Node node5 = graphModel.factory().newNode("4");
    directedGraph.addNode(node1);
    directedGraph.addNode(node2);
    directedGraph.addNode(node3);
    directedGraph.addNode(node4);
    directedGraph.addNode(node5);
    Edge edge12 = graphModel.factory().newEdge(node1, node2);
    Edge edge23 = graphModel.factory().newEdge(node2, node3);
    Edge edge31 = graphModel.factory().newEdge(node3, node1);
    Edge edge42 = graphModel.factory().newEdge(node4, node2);
    Edge edge54 = graphModel.factory().newEdge(node5, node4);
    directedGraph.addEdge(edge12);
    directedGraph.addEdge(edge23);
    directedGraph.addEdge(edge31);
    directedGraph.addEdge(edge42);
    directedGraph.addEdge(edge54);
    DirectedGraph graph = graphModel.getDirectedGraph();
    EigenvectorCentrality ec = new EigenvectorCentrality();
    double[] centralities = new double[5];
    HashMap<Integer, Node> indicies = new HashMap();
    HashMap<Node, Integer> invIndicies = new HashMap();
    ec.fillIndiciesMaps(graph, centralities, indicies, invIndicies);
    ec.calculateEigenvectorCentrality(graph, centralities, indicies, invIndicies, true, 1000);
    int index1 = invIndicies.get(node1);
    int index2 = invIndicies.get(node2);
    int index4 = invIndicies.get(node4);
    int index5 = invIndicies.get(node5);
    double ec1 = centralities[index1];
    double ec2 = centralities[index2];
    double ec4 = centralities[index4];
    double ec5 = centralities[index5];
    double diff = 0.01;
    double res0 = 0.;
    double res1 = 1.;
    assertEquals(ec5, 0.0);
    assertTrue(Math.abs(ec4 - res0) < diff);
    assertTrue(Math.abs(ec1 - res1) < diff);
    assertTrue(Math.abs(ec1 - ec2) < diff);
}

Example 10 with Edge

use of org.gephi.graph.api.Edge in project gephi by gephi.

the class EigenvectorCentralityNGTest method testSpecial1UndirectedGraphEigenvectorCentrlity.

@Test
public void testSpecial1UndirectedGraphEigenvectorCentrlity() {
    GraphModel graphModel = Lookup.getDefault().lookup(GraphController.class).getGraphModel();
    UndirectedGraph undirectedGraph = graphModel.getUndirectedGraph();
    Node node1 = graphModel.factory().newNode("0");
    Node node2 = graphModel.factory().newNode("1");
    Node node3 = graphModel.factory().newNode("2");
    Node node4 = graphModel.factory().newNode("3");
    undirectedGraph.addNode(node1);
    undirectedGraph.addNode(node2);
    undirectedGraph.addNode(node3);
    undirectedGraph.addNode(node4);
    Edge edge12 = graphModel.factory().newEdge(node1, node2, false);
    Edge edge23 = graphModel.factory().newEdge(node2, node3, false);
    Edge edge34 = graphModel.factory().newEdge(node3, node4, false);
    Edge edge13 = graphModel.factory().newEdge(node1, node3, false);
    Edge edge24 = graphModel.factory().newEdge(node2, node4, false);
    undirectedGraph.addEdge(edge12);
    undirectedGraph.addEdge(edge23);
    undirectedGraph.addEdge(edge34);
    undirectedGraph.addEdge(edge13);
    undirectedGraph.addEdge(edge24);
    UndirectedGraph graph = graphModel.getUndirectedGraph();
    EigenvectorCentrality ec = new EigenvectorCentrality();
    double[] centralities = new double[4];
    HashMap<Integer, Node> indicies = new HashMap();
    HashMap<Node, Integer> invIndicies = new HashMap();
    ec.fillIndiciesMaps(graph, centralities, indicies, invIndicies);
    ec.calculateEigenvectorCentrality(graph, centralities, indicies, invIndicies, false, 100);
    int index1 = invIndicies.get(node1);
    int index2 = invIndicies.get(node2);
    int index3 = invIndicies.get(node3);
    double ec1 = centralities[index1];
    double ec2 = centralities[index2];
    double ec3 = centralities[index3];
    assertEquals(ec2, ec3);
    assertNotEquals(ec1, ec2);
    assertEquals(ec3, 1.0);
}