Examples with Edge org.gephi.graph.api.Edge used on opensource projects

Example 31 with Edge

use of org.gephi.graph.api.Edge in project gephi by gephi.

the class HitsNGTest method testDirectedSpecial1GraphHits.

@Test
public void testDirectedSpecial1GraphHits() {
    GraphModel graphModel = Lookup.getDefault().lookup(GraphController.class).getGraphModel();
    DirectedGraph directedGraph = graphModel.getDirectedGraph();
    Node node1 = graphModel.factory().newNode("0");
    Node node2 = graphModel.factory().newNode("1");
    Node node3 = graphModel.factory().newNode("2");
    Node node4 = graphModel.factory().newNode("3");
    Node node5 = graphModel.factory().newNode("4");
    directedGraph.addNode(node1);
    directedGraph.addNode(node2);
    directedGraph.addNode(node3);
    directedGraph.addNode(node4);
    directedGraph.addNode(node5);
    Edge edge14 = graphModel.factory().newEdge(node1, node4);
    Edge edge15 = graphModel.factory().newEdge(node1, node5);
    Edge edge24 = graphModel.factory().newEdge(node2, node4);
    Edge edge25 = graphModel.factory().newEdge(node2, node5);
    Edge edge34 = graphModel.factory().newEdge(node3, node4);
    Edge edge35 = graphModel.factory().newEdge(node3, node5);
    directedGraph.addEdge(edge14);
    directedGraph.addEdge(edge15);
    directedGraph.addEdge(edge24);
    directedGraph.addEdge(edge25);
    directedGraph.addEdge(edge34);
    directedGraph.addEdge(edge35);
    DirectedGraph graph = graphModel.getDirectedGraph();
    Hits hit = new Hits();
    double[] authority = new double[5];
    double[] hubs = new double[5];
    HashMap<Node, Integer> indices = hit.createIndicesMap(graph);
    hit.calculateHits(graph, hubs, authority, indices, true, EPSILON);
    Node n1 = graph.getNode("0");
    Node n2 = graph.getNode("1");
    Node n4 = graph.getNode("3");
    Node n5 = graph.getNode("4");
    int index1 = indices.get(n1);
    int index2 = indices.get(n2);
    int index4 = indices.get(n4);
    int index5 = indices.get(n5);
    double hub1 = hubs[index1];
    double hub4 = hubs[index4];
    double auth2 = authority[index2];
    double auth5 = authority[index5];
    assertEquals(hub1, 0.5773);
    assertEquals(hub4, 0.0);
    assertEquals(auth2, 0.0);
    assertEquals(auth5, 0.7071);
}

Example 32 with Edge

use of org.gephi.graph.api.Edge in project gephi by gephi.

the class HitsNGTest method testDirectedStarOutGraphHits.

@Test
public void testDirectedStarOutGraphHits() {
    GraphModel graphModel = Lookup.getDefault().lookup(GraphController.class).getGraphModel();
    DirectedGraph directedGraph = graphModel.getDirectedGraph();
    Node firstNode = graphModel.factory().newNode("0");
    directedGraph.addNode(firstNode);
    for (int i = 1; i <= 5; i++) {
        Node currentNode = graphModel.factory().newNode(((Integer) i).toString());
        directedGraph.addNode(currentNode);
        Edge currentEdge = graphModel.factory().newEdge(firstNode, currentNode);
        directedGraph.addEdge(currentEdge);
    }
    DirectedGraph graph = graphModel.getDirectedGraph();
    Hits hit = new Hits();
    double[] authority = new double[6];
    double[] hubs = new double[6];
    HashMap<Node, Integer> indices = hit.createIndicesMap(graph);
    hit.calculateHits(graph, hubs, authority, indices, true, EPSILON);
    Node n1 = graph.getNode("0");
    Node n3 = graph.getNode("2");
    int index1 = indices.get(n1);
    int index3 = indices.get(n3);
    double hub1 = hubs[index1];
    double hub3 = hubs[index3];
    double auth1 = authority[index1];
    double auth3 = authority[index3];
    assertEquals(hub1, 1.0);
    assertEquals(auth1, 0.0);
    assertEquals(hub3, 0.0);
    assertEquals(auth3, 0.4472);
}

Example 33 with Edge

use of org.gephi.graph.api.Edge in project gephi by gephi.

the class GraphDistanceNGTest method testSpecial2UndirectedGraphRadius.

@Test
public void testSpecial2UndirectedGraphRadius() {
    GraphModel graphModel = Lookup.getDefault().lookup(GraphController.class).getGraphModel();
    UndirectedGraph undirectedGraph = graphModel.getUndirectedGraph();
    Node node1 = graphModel.factory().newNode("0");
    Node node2 = graphModel.factory().newNode("1");
    Node node3 = graphModel.factory().newNode("2");
    Node node4 = graphModel.factory().newNode("3");
    Node node5 = graphModel.factory().newNode("4");
    Node node6 = graphModel.factory().newNode("5");
    Node node7 = graphModel.factory().newNode("6");
    Node node8 = graphModel.factory().newNode("7");
    undirectedGraph.addNode(node1);
    undirectedGraph.addNode(node2);
    undirectedGraph.addNode(node3);
    undirectedGraph.addNode(node4);
    undirectedGraph.addNode(node5);
    undirectedGraph.addNode(node6);
    undirectedGraph.addNode(node7);
    undirectedGraph.addNode(node8);
    Edge edge12 = graphModel.factory().newEdge(node1, node2, false);
    Edge edge23 = graphModel.factory().newEdge(node2, node3, false);
    Edge edge34 = graphModel.factory().newEdge(node3, node4, false);
    Edge edge45 = graphModel.factory().newEdge(node4, node5, false);
    Edge edge56 = graphModel.factory().newEdge(node5, node6, false);
    Edge edge67 = graphModel.factory().newEdge(node6, node7, false);
    Edge edge78 = graphModel.factory().newEdge(node7, node8, false);
    Edge edge81 = graphModel.factory().newEdge(node8, node1, false);
    Edge edge14 = graphModel.factory().newEdge(node1, node4, false);
    Edge edge85 = graphModel.factory().newEdge(node8, node5, false);
    undirectedGraph.addEdge(edge12);
    undirectedGraph.addEdge(edge23);
    undirectedGraph.addEdge(edge34);
    undirectedGraph.addEdge(edge45);
    undirectedGraph.addEdge(edge56);
    undirectedGraph.addEdge(edge67);
    undirectedGraph.addEdge(edge78);
    undirectedGraph.addEdge(edge81);
    undirectedGraph.addEdge(edge14);
    undirectedGraph.addEdge(edge85);
    GraphDistance d = new GraphDistance();
    d.initializeStartValues();
    UndirectedGraph hierarchicalUndirectedGraph = graphModel.getUndirectedGraph();
    HashMap<Node, Integer> indicies = d.createIndiciesMap(hierarchicalUndirectedGraph);
    d.calculateDistanceMetrics(graphModel.getGraph(), indicies, false, false);
    double radius = d.getRadius();
    assertEquals(radius, 3.0, TOLERANCE);
}

Example 34 with Edge

use of org.gephi.graph.api.Edge in project gephi by gephi.

the class GraphDistanceNGTest method testSpecial1DirectedGraphCloseness.

@Test
public void testSpecial1DirectedGraphCloseness() {
    GraphModel graphModel = Lookup.getDefault().lookup(GraphController.class).getGraphModel();
    DirectedGraph directedGraph = graphModel.getDirectedGraph();
    Node node1 = graphModel.factory().newNode("0");
    Node node2 = graphModel.factory().newNode("1");
    Node node3 = graphModel.factory().newNode("2");
    Node node4 = graphModel.factory().newNode("3");
    Node node5 = graphModel.factory().newNode("4");
    directedGraph.addNode(node1);
    directedGraph.addNode(node2);
    directedGraph.addNode(node3);
    directedGraph.addNode(node4);
    directedGraph.addNode(node5);
    Edge edge13 = graphModel.factory().newEdge(node1, node3);
    Edge edge32 = graphModel.factory().newEdge(node3, node2);
    Edge edge21 = graphModel.factory().newEdge(node2, node1);
    Edge edge34 = graphModel.factory().newEdge(node3, node4);
    Edge edge45 = graphModel.factory().newEdge(node4, node5);
    Edge edge53 = graphModel.factory().newEdge(node5, node3);
    directedGraph.addEdge(edge13);
    directedGraph.addEdge(edge32);
    directedGraph.addEdge(edge21);
    directedGraph.addEdge(edge34);
    directedGraph.addEdge(edge45);
    directedGraph.addEdge(edge53);
    GraphDistance d = new GraphDistance();
    d.initializeStartValues();
    HashMap<Node, Integer> indicies = d.createIndiciesMap(graphModel.getGraph());
    HashMap<String, double[]> metricsMap = (HashMap) d.calculateDistanceMetrics(graphModel.getGraph(), indicies, true, false);
    double[] closeness = metricsMap.get(GraphDistance.CLOSENESS);
    int index2 = indicies.get(node2);
    int index3 = indicies.get(node3);
    assertEquals(closeness[index2], 1.0 / 2.5, TOLERANCE);
    assertEquals(closeness[index3], 1.0 / 1.5, TOLERANCE);
}

Example 35 with Edge

use of org.gephi.graph.api.Edge in project gephi by gephi.

the class GraphDistanceNGTest method testSpecial2DirectedGraphDiameter.

@Test
public void testSpecial2DirectedGraphDiameter() {
    GraphModel graphModel = Lookup.getDefault().lookup(GraphController.class).getGraphModel();
    DirectedGraph directedGraph = graphModel.getDirectedGraph();
    Node node1 = graphModel.factory().newNode("0");
    Node node2 = graphModel.factory().newNode("1");
    Node node3 = graphModel.factory().newNode("2");
    Node node4 = graphModel.factory().newNode("3");
    Node node5 = graphModel.factory().newNode("4");
    directedGraph.addNode(node1);
    directedGraph.addNode(node2);
    directedGraph.addNode(node3);
    directedGraph.addNode(node4);
    directedGraph.addNode(node5);
    Edge edge12 = graphModel.factory().newEdge(node1, node2);
    Edge edge14 = graphModel.factory().newEdge(node1, node4);
    Edge edge23 = graphModel.factory().newEdge(node2, node3);
    Edge edge25 = graphModel.factory().newEdge(node2, node5);
    Edge edge35 = graphModel.factory().newEdge(node3, node5);
    Edge edge43 = graphModel.factory().newEdge(node4, node3);
    Edge edge51 = graphModel.factory().newEdge(node5, node1);
    Edge edge54 = graphModel.factory().newEdge(node5, node4);
    directedGraph.addEdge(edge12);
    directedGraph.addEdge(edge14);
    directedGraph.addEdge(edge23);
    directedGraph.addEdge(edge25);
    directedGraph.addEdge(edge35);
    directedGraph.addEdge(edge43);
    directedGraph.addEdge(edge51);
    directedGraph.addEdge(edge54);
    GraphDistance d = new GraphDistance();
    d.initializeStartValues();
    UndirectedGraph undirectedGraph = graphModel.getUndirectedGraph();
    HashMap<Node, Integer> indicies = d.createIndiciesMap(undirectedGraph);
    d.calculateDistanceMetrics(graphModel.getGraph(), indicies, true, false);
    double diameter = d.getDiameter();
    assertEquals(diameter, 4.0, TOLERANCE);
}