Examples with DatasetImpl org.globalbioticinteractions.dataset.DatasetImpl used on opensource projects

Example 21 with DatasetImpl

use of org.globalbioticinteractions.dataset.DatasetImpl in project eol-globi-data by jhpoelen.

the class DatasetImporterForZenodoMetadataIT method importStudy.

@Test
public void importStudy() throws IOException, StudyImporterException {
    List<Map<String, String>> links = new ArrayList<>();
    final DatasetImporterForZenodoMetadata importer = new DatasetImporterForZenodoMetadata(null, null);
    importer.setInteractionListener(new InteractionListener() {

        @Override
        public void on(Map<String, String> interaction) throws StudyImporterException {
            links.add(interaction);
        }
    });
    final DatasetImpl dataset = new DatasetImpl("some/namespace", URI.create("some:archive"), in -> in) {

        @Override
        public String getOrDefault(String key, String defaultValue) {
            return "https://sandbox.zenodo.org/api/records/?custom=%5Bobo%3ARO_0002453%5D%3A%5B%3A%5D";
        }
    };
    importer.setDataset(dataset);
    importer.importStudy();
    assertThat(links.size() > 0, Is.is(true));
}

Example 22 with DatasetImpl

use of org.globalbioticinteractions.dataset.DatasetImpl in project eol-globi-data by jhpoelen.

the class ReferenceUtilTest method sourceCitationDatasetLocalResourceNonURI.

@Test
public void sourceCitationDatasetLocalResourceNonURI() throws IOException {
    DatasetImpl dataset = new DatasetImpl("some/namespace", URI.create("http://example"), inStream -> inStream);
    JsonNode config = new ObjectMapper().readTree("{ \"url\": \"foo bar\" }");
    dataset.setConfig(config);
    String citation = CitationUtil.sourceCitationLastAccessed(dataset);
    assertThat(citation, startsWith("<http://example>. Accessed at <http://example> on"));
}

Example 23 with DatasetImpl

use of org.globalbioticinteractions.dataset.DatasetImpl in project eol-globi-data by jhpoelen.

the class ReferenceUtilTest method generateSourceCitation.

@Test
public void generateSourceCitation() throws IOException, StudyImporterException {
    final InputStream inputStream = getClass().getResourceAsStream("/org/eol/globi/data/test-meta-globi.json");
    DatasetImpl dataset = new DatasetImpl(null, URI.create("http://base"), inStream -> inStream);
    dataset.setConfig(new ObjectMapper().readTree(inputStream));
    String citation = CitationUtil.sourceCitationLastAccessed(dataset);
    assertThat(citation, startsWith("Seltzer, Carrie; Wysocki, William; Palacios, Melissa; Eickhoff, Anna; Pilla, Hannah; Aungst, Jordan; Mercer, Aaron; Quicho, Jamie; Voss, Neil; Xu, Man; J. Ndangalasi, Henry; C. Lovett, Jon; J. Cordeiro, Norbert (2015): Plant-animal interactions from Africa. figshare. https://dx.doi.org/10.6084/m9.figshare.1526128. Accessed at <https://ndownloader.figshare.com/files/2231424>"));
}

Example 24 with DatasetImpl

use of org.globalbioticinteractions.dataset.DatasetImpl in project eol-globi-data by jhpoelen.

the class ReferenceUtilTest method sourceCitationDatasetNoConfig.

@Test
public void sourceCitationDatasetNoConfig() {
    String citation = CitationUtil.sourceCitationLastAccessed(new DatasetImpl("some/namespace", URI.create("http://example"), inStream -> inStream));
    assertThat(citation, startsWith("<http://example>. Accessed at <http://example> on"));
}

Example 25 with DatasetImpl

use of org.globalbioticinteractions.dataset.DatasetImpl in project eol-globi-data by jhpoelen.

the class ReferenceUtilTest method sourceCitationDataset.

@Test
public void sourceCitationDataset() throws IOException {
    DatasetImpl dataset = new DatasetImpl("some/namespace", URI.create("http://example"), inStream -> inStream);
    JsonNode config = new ObjectMapper().readTree("{ \"resources\": { \"archive\": \"archive.zip\" } }");
    dataset.setConfig(config);
    String citation = CitationUtil.sourceCitationLastAccessed(dataset);
    assertThat(citation, startsWith("<http://example>. Accessed at <http://example> on"));
}