Examples with DatasetImpl org.globalbioticinteractions.dataset.DatasetImpl used on opensource projects

Example 26 with DatasetImpl

use of org.globalbioticinteractions.dataset.DatasetImpl in project eol-globi-data by jhpoelen.

the class DatasetImplTest method doiExpectedPrefix.

@Test
public void doiExpectedPrefix() throws IOException {
    Dataset dataset = new DatasetImpl("some/namespace", URI.create("some:uri"), inStream -> inStream);
    dataset.setConfig(new ObjectMapper().readTree("{\"doi\": \"doi:10.2980/1195-6860(2006)13[23:TDOFUB]2.0.CO;2\" }"));
    assertThat(dataset.getDOI(), is(new DOI("2980", "1195-6860(2006)13[23:TDOFUB]2.0.CO;2")));
}

Example 27 with DatasetImpl

use of org.globalbioticinteractions.dataset.DatasetImpl in project eol-globi-data by jhpoelen.

the class DatasetImplTest method doiExpected.

@Test
public void doiExpected() throws IOException {
    Dataset dataset = new DatasetImpl("some/namespace", URI.create("some:uri"), inStream -> inStream);
    dataset.setConfig(new ObjectMapper().readTree("{\"doi\": \"http://dx.doi.org/10.2980/1195-6860(2006)13[23:TDOFUB]2.0.CO;2\" }"));
    assertThat(dataset.getDOI(), is(new DOI("2980", "1195-6860(2006)13[23:TDOFUB]2.0.CO;2")));
}

Example 28 with DatasetImpl

use of org.globalbioticinteractions.dataset.DatasetImpl in project eol-globi-data by jhpoelen.

the class DatasetProxyTest method getTestDataset.

public DatasetProxy getTestDataset(JsonNode config, JsonNode configProxy) {
    DatasetImpl dataset = new DatasetImpl("some/namespace", URI.create("http://example.com"), inStream -> inStream);
    dataset.setConfig(config);
    DatasetProxy datasetProxy = new DatasetProxy(dataset);
    datasetProxy.setConfig(configProxy);
    return datasetProxy;
}

Example 29 with DatasetImpl

use of org.globalbioticinteractions.dataset.DatasetImpl in project eol-globi-data by jhpoelen.

the class DatasetImporterFactoryImplTest method createImporter.

@Test
public void createImporter() throws StudyImporterException {
    DatasetImporter someImporter = new StudyImporterFactoryImpl(null).createImporter(new DatasetImpl("namespace", URI.create("some:uri"), is -> is));
    assertThat(someImporter, instanceOf(DatasetImporterForTSV.class));
}

Example 30 with DatasetImpl

use of org.globalbioticinteractions.dataset.DatasetImpl in project eol-globi-data by jhpoelen.

the class DatasetTest method resourceURL.

@Test
public void resourceURL() throws IOException, URISyntaxException {
    URL resource = getClass().getResource("archive.zip");
    File archive = new File(resource.toURI());
    assertThat(archive.exists(), is(true));
    URI parentDir = archive.getParentFile().toURI();
    Dataset dataset = new DatasetImpl("some/namespace", parentDir, inStream -> inStream);
    InputStream retrieve = dataset.retrieve(resource.toURI());
    assertArchiveHash(retrieve);
    assertArchiveHash(dataset.retrieve(URI.create("archive.zip")));
    assertArchiveHash(dataset.retrieve(URI.create("/archive.zip")));
}