Examples with Note org.hisp.dhis.dxf2.events.event.Note used on opensource projects

Example 1 with Note

use of org.hisp.dhis.dxf2.events.event.Note in project dhis2-core by dhis2.

the class AbstractEnrollmentService method getEnrollment.

@Override
public Enrollment getEnrollment(ProgramInstance programInstance, TrackedEntityInstanceParams params) {
    Enrollment enrollment = new Enrollment();
    enrollment.setEnrollment(programInstance.getUid());
    if (programInstance.getEntityInstance() != null) {
        enrollment.setTrackedEntity(programInstance.getEntityInstance().getTrackedEntity().getUid());
        enrollment.setTrackedEntityInstance(programInstance.getEntityInstance().getUid());
    }
    if (programInstance.getOrganisationUnit() != null) {
        enrollment.setOrgUnit(programInstance.getOrganisationUnit().getUid());
        enrollment.setOrgUnitName(programInstance.getOrganisationUnit().getName());
    }
    if (programInstance.getProgram().getCaptureCoordinates()) {
        Coordinate coordinate = null;
        if (programInstance.getLongitude() != null && programInstance.getLatitude() != null) {
            coordinate = new Coordinate(programInstance.getLongitude(), programInstance.getLatitude());
            try {
                List<Double> list = OBJECT_MAPPER.readValue(coordinate.getCoordinateString(), new TypeReference<List<Double>>() {
                });
                coordinate.setLongitude(list.get(0));
                coordinate.setLatitude(list.get(1));
            } catch (IOException ignored) {
            }
        }
        if (coordinate != null && coordinate.isValid()) {
            enrollment.setCoordinate(coordinate);
        }
    }
    enrollment.setCreated(DateUtils.getIso8601NoTz(programInstance.getCreated()));
    enrollment.setCreatedAtClient(DateUtils.getIso8601NoTz(programInstance.getCreatedAtClient()));
    enrollment.setLastUpdated(DateUtils.getIso8601NoTz(programInstance.getLastUpdated()));
    enrollment.setLastUpdatedAtClient(DateUtils.getIso8601NoTz(programInstance.getLastUpdatedAtClient()));
    enrollment.setProgram(programInstance.getProgram().getUid());
    enrollment.setStatus(EnrollmentStatus.fromProgramStatus(programInstance.getStatus()));
    enrollment.setEnrollmentDate(programInstance.getEnrollmentDate());
    enrollment.setIncidentDate(programInstance.getIncidentDate());
    enrollment.setFollowup(programInstance.getFollowup());
    enrollment.setCompletedDate(programInstance.getEndDate());
    enrollment.setCompletedBy(programInstance.getCompletedBy());
    List<TrackedEntityComment> comments = programInstance.getComments();
    for (TrackedEntityComment comment : comments) {
        Note note = new Note();
        note.setValue(comment.getCommentText());
        note.setStoredBy(comment.getCreator());
        if (comment.getCreatedDate() != null) {
            note.setStoredDate(comment.getCreatedDate().toString());
        }
        enrollment.getNotes().add(note);
    }
    if (params.isIncludeEvents()) {
        for (ProgramStageInstance programStageInstance : programInstance.getProgramStageInstances()) {
            enrollment.getEvents().add(eventService.getEvent(programStageInstance));
        }
    }
    return enrollment;
}

Example 2 with Note

use of org.hisp.dhis.dxf2.events.event.Note in project dhis2-core by dhis2.

the class AbstractEnrollmentService method saveTrackedEntityComment.

private void saveTrackedEntityComment(ProgramInstance programInstance, Enrollment enrollment) {
    String storedBy = currentUserService.getCurrentUsername();
    for (Note note : enrollment.getNotes()) {
        TrackedEntityComment comment = new TrackedEntityComment();
        comment.setCreator(storedBy);
        comment.setCreatedDate(new Date());
        comment.setCommentText(note.getValue());
        commentService.addTrackedEntityComment(comment);
        programInstance.getComments().add(comment);
        programInstanceService.updateProgramInstance(programInstance);
    }
}

Example 3 with Note

use of org.hisp.dhis.dxf2.events.event.Note in project dhis2-core by dhis2.

the class DefaultAdxDataService method saveDataValueSetInternal.

private ImportSummary saveDataValueSetInternal(InputStream in, ImportOptions importOptions, TaskId id) {
    notifier.clear(id).notify(id, "ADX parsing process started");
    ImportOptions adxImportOptions = ObjectUtils.firstNonNull(importOptions, ImportOptions.getDefaultImportOptions()).instance().setNotificationLevel(NotificationLevel.OFF);
    // Get import options
    IdScheme dataSetIdScheme = importOptions.getIdSchemes().getDataSetIdScheme();
    IdScheme dataElementIdScheme = importOptions.getIdSchemes().getDataElementIdScheme();
    // Create meta-data maps
    CachingMap<String, DataSet> dataSetMap = new CachingMap<>();
    CachingMap<String, DataElement> dataElementMap = new CachingMap<>();
    // Get meta-data maps
    IdentifiableObjectCallable<DataSet> dataSetCallable = new IdentifiableObjectCallable<>(identifiableObjectManager, DataSet.class, dataSetIdScheme, null);
    IdentifiableObjectCallable<DataElement> dataElementCallable = new IdentifiableObjectCallable<>(identifiableObjectManager, DataElement.class, dataElementIdScheme, null);
    // Heat cache
    if (importOptions.isPreheatCacheDefaultFalse()) {
        dataSetMap.load(identifiableObjectManager.getAll(DataSet.class), o -> o.getPropertyValue(dataSetIdScheme));
        dataElementMap.load(identifiableObjectManager.getAll(DataElement.class), o -> o.getPropertyValue(dataElementIdScheme));
    }
    XMLReader adxReader = XMLFactory.getXMLReader(in);
    ImportSummary importSummary;
    adxReader.moveToStartElement(AdxDataService.ROOT, AdxDataService.NAMESPACE);
    ExecutorService executor = Executors.newSingleThreadExecutor();
    // Give the DXF import a different notification task ID so it doesn't conflict with notifications from this level.
    TaskId dxfTaskId = new TaskId(TaskCategory.DATAVALUE_IMPORT_INTERNAL, id.getUser());
    int groupCount = 0;
    try (PipedOutputStream pipeOut = new PipedOutputStream()) {
        Future<ImportSummary> futureImportSummary = executor.submit(new AdxPipedImporter(dataValueSetService, adxImportOptions, dxfTaskId, pipeOut, sessionFactory));
        XMLOutputFactory factory = XMLOutputFactory.newInstance();
        XMLStreamWriter dxfWriter = factory.createXMLStreamWriter(pipeOut);
        List<ImportConflict> adxConflicts = new LinkedList<>();
        dxfWriter.writeStartDocument("1.0");
        dxfWriter.writeStartElement("dataValueSet");
        dxfWriter.writeDefaultNamespace("http://dhis2.org/schema/dxf/2.0");
        notifier.notify(id, "Starting to import ADX data groups.");
        while (adxReader.moveToStartElement(AdxDataService.GROUP, AdxDataService.NAMESPACE)) {
            notifier.update(id, "Importing ADX data group: " + groupCount);
            // note this returns conflicts which are detected at ADX level
            adxConflicts.addAll(parseAdxGroupToDxf(adxReader, dxfWriter, adxImportOptions, dataSetMap, dataSetCallable, dataElementMap, dataElementCallable));
            groupCount++;
        }
        // end dataValueSet
        dxfWriter.writeEndElement();
        dxfWriter.writeEndDocument();
        pipeOut.flush();
        importSummary = futureImportSummary.get(TOTAL_MINUTES_TO_WAIT, TimeUnit.MINUTES);
        importSummary.getConflicts().addAll(adxConflicts);
        importSummary.getImportCount().incrementIgnored(adxConflicts.size());
    } catch (AdxException ex) {
        importSummary = new ImportSummary();
        importSummary.setStatus(ImportStatus.ERROR);
        importSummary.setDescription("Data set import failed within group number: " + groupCount);
        importSummary.getConflicts().add(ex.getImportConflict());
        notifier.update(id, NotificationLevel.ERROR, "ADX data import done", true);
        log.warn("Import failed: " + DebugUtils.getStackTrace(ex));
    } catch (IOException | XMLStreamException | InterruptedException | ExecutionException | TimeoutException ex) {
        importSummary = new ImportSummary();
        importSummary.setStatus(ImportStatus.ERROR);
        importSummary.setDescription("Data set import failed within group number: " + groupCount);
        notifier.update(id, NotificationLevel.ERROR, "ADX data import done", true);
        log.warn("Import failed: " + DebugUtils.getStackTrace(ex));
    }
    executor.shutdown();
    notifier.update(id, INFO, "ADX data import done", true).addTaskSummary(id, importSummary);
    ImportCount c = importSummary.getImportCount();
    log.info("ADX data import done, imported: " + c.getImported() + ", updated: " + c.getUpdated() + ", deleted: " + c.getDeleted() + ", ignored: " + c.getIgnored());
    return importSummary;
}

Example 4 with Note

use of org.hisp.dhis.dxf2.events.event.Note in project dhis2-core by dhis2.

the class JdbcEventStore method getEventRows.

@Override
public List<EventRow> getEventRows(EventSearchParams params, List<OrganisationUnit> organisationUnits) {
    User user = currentUserService.getCurrentUser();
    setAccessiblePrograms(user, params);
    List<EventRow> eventRows = new ArrayList<>();
    String sql = buildSql(params, organisationUnits, user);
    SqlRowSet rowSet = jdbcTemplate.queryForRowSet(sql);
    log.debug("Event query SQL: " + sql);
    EventRow eventRow = new EventRow();
    eventRow.setEvent("not_valid");
    Set<String> notes = new HashSet<>();
    Map<String, List<DataValue>> processedDataValues = new HashMap<>();
    while (rowSet.next()) {
        if (rowSet.getString("psi_uid") == null || (params.getCategoryOptionCombo() == null && !isSuper(user) && !userHasAccess(rowSet))) {
            continue;
        }
        if (eventRow.getUid() == null || !eventRow.getUid().equals(rowSet.getString("psi_uid"))) {
            validateIdentifiersPresence(rowSet, params.getIdSchemes(), false);
            eventRow = new EventRow();
            eventRow.setUid(rowSet.getString("psi_uid"));
            eventRow.setEvent(rowSet.getString("psi_uid"));
            eventRow.setTrackedEntityInstance(rowSet.getString("tei_uid"));
            eventRow.setTrackedEntityInstanceOrgUnit(rowSet.getString("tei_ou"));
            eventRow.setTrackedEntityInstanceOrgUnitName(rowSet.getString("tei_ou_name"));
            eventRow.setTrackedEntityInstanceCreated(rowSet.getString("tei_created"));
            eventRow.setTrackedEntityInstanceInactive(rowSet.getBoolean("tei_inactive"));
            eventRow.setDeleted(rowSet.getBoolean("psi_deleted"));
            eventRow.setProgram(rowSet.getString("p_identifier"));
            eventRow.setProgramStage(rowSet.getString("ps_identifier"));
            eventRow.setOrgUnit(rowSet.getString("ou_identifier"));
            ProgramType programType = ProgramType.fromValue(rowSet.getString("p_type"));
            if (programType == ProgramType.WITHOUT_REGISTRATION) {
                eventRow.setEnrollment(rowSet.getString("pi_uid"));
                eventRow.setFollowup(rowSet.getBoolean("pi_followup"));
            }
            eventRow.setTrackedEntityInstance(rowSet.getString("tei_uid"));
            eventRow.setOrgUnitName(rowSet.getString("ou_name"));
            eventRow.setDueDate(DateUtils.getIso8601NoTz(rowSet.getDate("psi_duedate")));
            eventRow.setEventDate(DateUtils.getIso8601NoTz(rowSet.getDate("psi_executiondate")));
            eventRows.add(eventRow);
        }
        if (rowSet.getString("pav_value") != null && rowSet.getString("ta_uid") != null) {
            String valueType = rowSet.getString("ta_valuetype");
            Attribute attribute = new Attribute();
            attribute.setCreated(DateUtils.getIso8601NoTz(rowSet.getDate("pav_created")));
            attribute.setLastUpdated(DateUtils.getIso8601NoTz(rowSet.getDate("pav_lastupdated")));
            attribute.setValue(rowSet.getString("pav_value"));
            attribute.setDisplayName(rowSet.getString("ta_name"));
            attribute.setValueType(valueType != null ? ValueType.valueOf(valueType.toUpperCase()) : null);
            attribute.setAttribute(rowSet.getString("ta_uid"));
            eventRow.getAttributes().add(attribute);
        }
        if (!StringUtils.isEmpty(rowSet.getString("psi_eventdatavalues")) && !processedDataValues.containsKey(rowSet.getString("psi_uid"))) {
            List<DataValue> dataValues = new ArrayList<>();
            Set<EventDataValue> eventDataValues = convertEventDataValueJsonIntoSet(rowSet.getString("psi_eventdatavalues"));
            for (EventDataValue dv : eventDataValues) {
                dataValues.add(convertEventDataValueIntoDtoDataValue(dv));
            }
            processedDataValues.put(rowSet.getString("psi_uid"), dataValues);
        }
        if (rowSet.getString("psinote_value") != null && !notes.contains(rowSet.getString("psinote_id"))) {
            Note note = new Note();
            note.setNote(rowSet.getString("psinote_uid"));
            note.setValue(rowSet.getString("psinote_value"));
            note.setStoredDate(DateUtils.getIso8601NoTz(rowSet.getDate("psinote_storeddate")));
            note.setStoredBy(rowSet.getString("psinote_storedby"));
            eventRow.getNotes().add(note);
            notes.add(rowSet.getString("psinote_id"));
        }
    }
    eventRows.forEach(e -> e.setDataValues(processedDataValues.get(e.getUid())));
    IdSchemes idSchemes = ObjectUtils.firstNonNull(params.getIdSchemes(), new IdSchemes());
    IdScheme dataElementIdScheme = idSchemes.getDataElementIdScheme();
    if (dataElementIdScheme != IdScheme.ID && dataElementIdScheme != IdScheme.UID) {
        CachingMap<String, String> dataElementUidToIdentifierCache = new CachingMap<>();
        List<Collection<DataValue>> dataValuesList = eventRows.stream().map(EventRow::getDataValues).collect(Collectors.toList());
        populateCache(dataElementIdScheme, dataValuesList, dataElementUidToIdentifierCache);
        convertDataValuesIdentifiers(dataElementIdScheme, dataValuesList, dataElementUidToIdentifierCache);
    }
    return eventRows;
}

Example 5 with Note

use of org.hisp.dhis.dxf2.events.event.Note in project dhis2-core by dhis2.

the class NoteHelper method toNote.

private Note toNote(TrackedEntityComment trackedEntityComment) {
    Note note = new Note();
    note.setNote(trackedEntityComment.getUid());
    note.setValue(trackedEntityComment.getCommentText());
    note.setStoredBy(trackedEntityComment.getCreator());
    note.setStoredDate(DateUtils.getIso8601NoTz(trackedEntityComment.getCreated()));
    note.setLastUpdatedBy(UserInfoSnapshot.from(trackedEntityComment.getLastUpdatedBy()));
    note.setLastUpdated(trackedEntityComment.getLastUpdated());
    return note;
}