use of org.hl7.fhir.convertors.SourceElementComponentWrapper in project org.hl7.fhir.core by hapifhir.
the class ConceptMap10_30 method convertConceptMap.
public static org.hl7.fhir.dstu3.model.ConceptMap convertConceptMap(org.hl7.fhir.dstu2.model.ConceptMap src) throws FHIRException {
if (src == null || src.isEmpty())
return null;
org.hl7.fhir.dstu3.model.ConceptMap tgt = new org.hl7.fhir.dstu3.model.ConceptMap();
ConversionContext10_30.INSTANCE.getVersionConvertor_10_30().copyDomainResource(src, tgt);
if (src.hasUrlElement())
tgt.setUrlElement(Uri10_30.convertUri(src.getUrlElement()));
if (src.hasIdentifier())
tgt.setIdentifier(Identifier10_30.convertIdentifier(src.getIdentifier()));
if (src.hasVersionElement())
tgt.setVersionElement(String10_30.convertString(src.getVersionElement()));
if (src.hasNameElement())
tgt.setNameElement(String10_30.convertString(src.getNameElement()));
if (src.hasStatus())
tgt.setStatusElement(Enumerations10_30.convertConformanceResourceStatus(src.getStatusElement()));
if (src.hasExperimental())
tgt.setExperimentalElement(Boolean10_30.convertBoolean(src.getExperimentalElement()));
if (src.hasPublisherElement())
tgt.setPublisherElement(String10_30.convertString(src.getPublisherElement()));
for (org.hl7.fhir.dstu2.model.ConceptMap.ConceptMapContactComponent t : src.getContact()) tgt.addContact(convertConceptMapContactComponent(t));
if (src.hasDate())
tgt.setDateElement(DateTime10_30.convertDateTime(src.getDateElement()));
if (src.hasDescription())
tgt.setDescription(src.getDescription());
for (org.hl7.fhir.dstu2.model.CodeableConcept t : src.getUseContext()) if (VersionConvertor_10_30.isJurisdiction(t))
tgt.addJurisdiction(CodeableConcept10_30.convertCodeableConcept(t));
else
tgt.addUseContext(CodeableConcept10_30.convertCodeableConceptToUsageContext(t));
if (src.hasRequirements())
tgt.setPurpose(src.getRequirements());
if (src.hasCopyright())
tgt.setCopyright(src.getCopyright());
if (src.hasSource())
tgt.setSource(ConversionContext10_30.INSTANCE.getVersionConvertor_10_30().convertType(src.getSource()));
if (src.hasTarget())
tgt.setTarget(ConversionContext10_30.INSTANCE.getVersionConvertor_10_30().convertType(src.getTarget()));
for (org.hl7.fhir.dstu2.model.ConceptMap.SourceElementComponent t : src.getElement()) {
List<SourceElementComponentWrapper<ConceptMap.SourceElementComponent>> ws = convertSourceElementComponent(t);
for (SourceElementComponentWrapper<ConceptMap.SourceElementComponent> w : ws) getGroup(tgt, w.getSource(), w.getTarget()).addElement(w.getComp());
}
return tgt;
}
use of org.hl7.fhir.convertors.SourceElementComponentWrapper in project org.hl7.fhir.core by hapifhir.
the class ConceptMap14_30 method convertConceptMap.
public static org.hl7.fhir.dstu3.model.ConceptMap convertConceptMap(org.hl7.fhir.dstu2016may.model.ConceptMap src) throws FHIRException {
if (src == null || src.isEmpty())
return null;
org.hl7.fhir.dstu3.model.ConceptMap tgt = new org.hl7.fhir.dstu3.model.ConceptMap();
ConversionContext14_30.INSTANCE.getVersionConvertor_14_30().copyDomainResource(src, tgt);
if (src.hasUrl())
tgt.setUrlElement(Uri14_30.convertUri(src.getUrlElement()));
if (src.hasIdentifier())
tgt.setIdentifier(Identifier14_30.convertIdentifier(src.getIdentifier()));
if (src.hasVersion())
tgt.setVersionElement(String14_30.convertString(src.getVersionElement()));
if (src.hasName())
tgt.setNameElement(String14_30.convertString(src.getNameElement()));
if (src.hasStatus())
tgt.setStatusElement(Enumerations14_30.convertConformanceResourceStatus(src.getStatusElement()));
if (src.hasExperimental())
tgt.setExperimentalElement(Boolean14_30.convertBoolean(src.getExperimentalElement()));
if (src.hasPublisher())
tgt.setPublisherElement(String14_30.convertString(src.getPublisherElement()));
for (org.hl7.fhir.dstu2016may.model.ConceptMap.ConceptMapContactComponent t : src.getContact()) tgt.addContact(convertConceptMapContactComponent(t));
if (src.hasDate())
tgt.setDateElement(DateTime14_30.convertDateTime(src.getDateElement()));
if (src.hasDescription())
tgt.setDescription(src.getDescription());
for (org.hl7.fhir.dstu2016may.model.CodeableConcept t : src.getUseContext()) if (VersionConvertor_14_30.isJurisdiction(t))
tgt.addJurisdiction(CodeableConcept14_30.convertCodeableConcept(t));
else
tgt.addUseContext(CodeableConcept14_30.convertCodeableConceptToUsageContext(t));
if (src.hasRequirements())
tgt.setPurpose(src.getRequirements());
if (src.hasCopyright())
tgt.setCopyright(src.getCopyright());
if (src.hasSource())
tgt.setSource(ConversionContext14_30.INSTANCE.getVersionConvertor_14_30().convertType(src.getSource()));
if (src.hasTarget())
tgt.setTarget(ConversionContext14_30.INSTANCE.getVersionConvertor_14_30().convertType(src.getTarget()));
for (org.hl7.fhir.dstu2016may.model.ConceptMap.SourceElementComponent t : src.getElement()) {
List<SourceElementComponentWrapper<ConceptMap.SourceElementComponent>> ws = convertSourceElementComponent(t);
for (SourceElementComponentWrapper<ConceptMap.SourceElementComponent> w : ws) getGroup(tgt, w.getSource(), w.getTarget()).addElement(w.getComp());
}
return tgt;
}
use of org.hl7.fhir.convertors.SourceElementComponentWrapper in project org.hl7.fhir.core by hapifhir.
the class ConceptMap10_40 method convertConceptMap.
public static org.hl7.fhir.r4.model.ConceptMap convertConceptMap(org.hl7.fhir.dstu2.model.ConceptMap src) throws FHIRException {
if (src == null || src.isEmpty())
return null;
org.hl7.fhir.r4.model.ConceptMap tgt = new org.hl7.fhir.r4.model.ConceptMap();
ConversionContext10_40.INSTANCE.getVersionConvertor_10_40().copyDomainResource(src, tgt);
if (src.hasUrlElement())
tgt.setUrlElement(Uri10_40.convertUri(src.getUrlElement()));
if (src.hasIdentifier())
tgt.setIdentifier(Identifier10_40.convertIdentifier(src.getIdentifier()));
if (src.hasVersionElement())
tgt.setVersionElement(String10_40.convertString(src.getVersionElement()));
if (src.hasNameElement())
tgt.setNameElement(String10_40.convertString(src.getNameElement()));
if (src.hasStatus())
tgt.setStatusElement(Enumerations10_40.convertConformanceResourceStatus(src.getStatusElement()));
if (src.hasExperimental())
tgt.setExperimentalElement(Boolean10_40.convertBoolean(src.getExperimentalElement()));
if (src.hasPublisherElement())
tgt.setPublisherElement(String10_40.convertString(src.getPublisherElement()));
for (org.hl7.fhir.dstu2.model.ConceptMap.ConceptMapContactComponent t : src.getContact()) tgt.addContact(convertConceptMapContactComponent(t));
if (src.hasDate())
tgt.setDateElement(DateTime10_40.convertDateTime(src.getDateElement()));
if (src.hasDescription())
tgt.setDescription(src.getDescription());
for (org.hl7.fhir.dstu2.model.CodeableConcept t : src.getUseContext()) if (VersionConvertor_10_40.isJurisdiction(t))
tgt.addJurisdiction(CodeableConcept10_40.convertCodeableConcept(t));
else
tgt.addUseContext(CodeableConcept10_40.convertCodeableConceptToUsageContext(t));
if (src.hasRequirements())
tgt.setPurpose(src.getRequirements());
if (src.hasCopyright())
tgt.setCopyright(src.getCopyright());
org.hl7.fhir.r4.model.Type r = ConversionContext10_40.INSTANCE.getVersionConvertor_10_40().convertType(src.getSource());
tgt.setSource(r instanceof org.hl7.fhir.r4.model.Reference ? new CanonicalType(((org.hl7.fhir.r4.model.Reference) r).getReference()) : r);
r = ConversionContext10_40.INSTANCE.getVersionConvertor_10_40().convertType(src.getTarget());
tgt.setTarget(r instanceof org.hl7.fhir.r4.model.Reference ? new CanonicalType(((org.hl7.fhir.r4.model.Reference) r).getReference()) : r);
for (org.hl7.fhir.dstu2.model.ConceptMap.SourceElementComponent t : src.getElement()) {
List<SourceElementComponentWrapper<ConceptMap.SourceElementComponent>> ws = convertSourceElementComponent(t);
for (SourceElementComponentWrapper<ConceptMap.SourceElementComponent> w : ws) getGroup(tgt, w.getSource(), w.getTarget()).addElement(w.getComp());
}
return tgt;
}
use of org.hl7.fhir.convertors.SourceElementComponentWrapper in project org.hl7.fhir.core by hapifhir.
the class ConceptMap14_50 method convertConceptMap.
public static org.hl7.fhir.r5.model.ConceptMap convertConceptMap(org.hl7.fhir.dstu2016may.model.ConceptMap src) throws FHIRException {
if (src == null || src.isEmpty())
return null;
org.hl7.fhir.r5.model.ConceptMap tgt = new org.hl7.fhir.r5.model.ConceptMap();
ConversionContext14_50.INSTANCE.getVersionConvertor_14_50().copyDomainResource(src, tgt);
if (src.hasUrl())
tgt.setUrlElement(Uri14_50.convertUri(src.getUrlElement()));
if (src.hasIdentifier())
tgt.addIdentifier(Identifier14_50.convertIdentifier(src.getIdentifier()));
if (src.hasVersion())
tgt.setVersionElement(String14_50.convertString(src.getVersionElement()));
if (src.hasName())
tgt.setNameElement(String14_50.convertString(src.getNameElement()));
if (src.hasStatus())
tgt.setStatusElement(Enumerations14_50.convertConformanceResourceStatus(src.getStatusElement()));
if (src.hasExperimental())
tgt.setExperimentalElement(Boolean14_50.convertBoolean(src.getExperimentalElement()));
if (src.hasPublisher())
tgt.setPublisherElement(String14_50.convertString(src.getPublisherElement()));
for (org.hl7.fhir.dstu2016may.model.ConceptMap.ConceptMapContactComponent t : src.getContact()) tgt.addContact(convertConceptMapContactComponent(t));
if (src.hasDate())
tgt.setDateElement(DateTime14_50.convertDateTime(src.getDateElement()));
if (src.hasDescription())
tgt.setDescription(src.getDescription());
for (org.hl7.fhir.dstu2016may.model.CodeableConcept t : src.getUseContext()) if (CodeableConcept14_50.isJurisdiction(t))
tgt.addJurisdiction(CodeableConcept14_50.convertCodeableConcept(t));
else
tgt.addUseContext(CodeableConcept14_50.convertCodeableConceptToUsageContext(t));
if (src.hasRequirements())
tgt.setPurpose(src.getRequirements());
if (src.hasCopyright())
tgt.setCopyright(src.getCopyright());
org.hl7.fhir.r5.model.DataType tt = ConversionContext14_50.INSTANCE.getVersionConvertor_14_50().convertType(src.getSource());
tgt.setSource(tt instanceof org.hl7.fhir.r5.model.Reference ? new CanonicalType(((org.hl7.fhir.r5.model.Reference) tt).getReference()) : tt);
tt = ConversionContext14_50.INSTANCE.getVersionConvertor_14_50().convertType(src.getTarget());
tgt.setTarget(tt instanceof org.hl7.fhir.r5.model.Reference ? new CanonicalType(((org.hl7.fhir.r5.model.Reference) tt).getReference()) : tt);
for (org.hl7.fhir.dstu2016may.model.ConceptMap.SourceElementComponent t : src.getElement()) {
List<SourceElementComponentWrapper<ConceptMap.SourceElementComponent>> ws = convertSourceElementComponent(t);
for (SourceElementComponentWrapper<ConceptMap.SourceElementComponent> w : ws) getGroup(tgt, w.getSource(), w.getTarget()).addElement(w.getComp());
}
return tgt;
}
use of org.hl7.fhir.convertors.SourceElementComponentWrapper in project org.hl7.fhir.core by hapifhir.
the class StructureMapUtilities method translate.
public Base translate(TransformContext context, StructureMap map, Base source, String conceptMapUrl, String fieldToReturn) throws FHIRException {
Coding src = new Coding();
if (source.isPrimitive()) {
src.setCode(source.primitiveValue());
} else if ("Coding".equals(source.fhirType())) {
Base[] b = source.getProperty("system".hashCode(), "system", true);
if (b.length == 1)
src.setSystem(b[0].primitiveValue());
b = source.getProperty("code".hashCode(), "code", true);
if (b.length == 1)
src.setCode(b[0].primitiveValue());
} else if ("CE".equals(source.fhirType())) {
Base[] b = source.getProperty("codeSystem".hashCode(), "codeSystem", true);
if (b.length == 1)
src.setSystem(b[0].primitiveValue());
b = source.getProperty("code".hashCode(), "code", true);
if (b.length == 1)
src.setCode(b[0].primitiveValue());
} else
throw new FHIRException("Unable to translate source " + source.fhirType());
String su = conceptMapUrl;
if (conceptMapUrl.equals("http://hl7.org/fhir/ConceptMap/special-oid2uri")) {
String uri = worker.oid2Uri(src.getCode());
if (uri == null)
uri = "urn:oid:" + src.getCode();
if ("uri".equals(fieldToReturn))
return new UriType(uri);
else
throw new FHIRException("Error in return code");
} else {
ConceptMap cmap = null;
if (conceptMapUrl.startsWith("#")) {
for (Resource r : map.getContained()) {
if (r instanceof ConceptMap && ((ConceptMap) r).getId().equals(conceptMapUrl.substring(1))) {
cmap = (ConceptMap) r;
su = map.getUrl() + "#" + conceptMapUrl;
}
}
if (cmap == null)
throw new FHIRException("Unable to translate - cannot find map " + conceptMapUrl);
} else {
if (conceptMapUrl.contains("#")) {
String[] p = conceptMapUrl.split("\\#");
StructureMap mapU = worker.fetchResource(StructureMap.class, p[0]);
for (Resource r : mapU.getContained()) {
if (r instanceof ConceptMap && ((ConceptMap) r).getId().equals(p[1])) {
cmap = (ConceptMap) r;
su = conceptMapUrl;
}
}
}
if (cmap == null)
cmap = worker.fetchResource(ConceptMap.class, conceptMapUrl);
}
Coding outcome = null;
boolean done = false;
String message = null;
if (cmap == null) {
if (services == null)
message = "No map found for " + conceptMapUrl;
else {
outcome = services.translate(context.getAppInfo(), src, conceptMapUrl);
done = true;
}
} else {
List<SourceElementComponentWrapper> list = new ArrayList<SourceElementComponentWrapper>();
for (ConceptMapGroupComponent g : cmap.getGroup()) {
for (SourceElementComponent e : g.getElement()) {
if (!src.hasSystem() && src.getCode().equals(e.getCode()))
list.add(new SourceElementComponentWrapper(g, e));
else if (src.hasSystem() && src.getSystem().equals(g.getSource()) && src.getCode().equals(e.getCode()))
list.add(new SourceElementComponentWrapper(g, e));
}
}
if (list.size() == 0)
done = true;
else if (list.get(0).comp.getTarget().size() == 0)
message = "Concept map " + su + " found no translation for " + src.getCode();
else {
for (TargetElementComponent tgt : list.get(0).comp.getTarget()) {
if (tgt.getEquivalence() == null || EnumSet.of(ConceptMapEquivalence.EQUAL, ConceptMapEquivalence.RELATEDTO, ConceptMapEquivalence.EQUIVALENT, ConceptMapEquivalence.WIDER).contains(tgt.getEquivalence())) {
if (done) {
message = "Concept map " + su + " found multiple matches for " + src.getCode();
done = false;
} else {
done = true;
outcome = new Coding().setCode(tgt.getCode()).setSystem(list.get(0).group.getTarget());
}
} else if (tgt.getEquivalence() == ConceptMapEquivalence.UNMATCHED) {
done = true;
}
}
if (!done)
message = "Concept map " + su + " found no usable translation for " + src.getCode();
}
}
if (!done)
throw new FHIRException(message);
if (outcome == null)
return null;
if ("code".equals(fieldToReturn))
return new CodeType(outcome.getCode());
else
return outcome;
}
}
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