Examples with ElementDefinitionMappingComponent org.hl7.fhir.dstu2.model.ElementDefinition.ElementDefinitionMappingComponent used on opensource projects

Example 31 with ElementDefinitionMappingComponent

use of org.hl7.fhir.dstu2.model.ElementDefinition.ElementDefinitionMappingComponent in project org.hl7.fhir.core by hapifhir.

the class CSVWriter method processElement.

/*  private void findMapKeys(StructureDefinition def, List<StructureDefinitionMappingComponent> maps, IWorkerContext context) {
  	maps.addAll(def.getMapping());
  	if (def.getBaseDefinition()!=null) {
  	  StructureDefinition base = context.fetchResource(StructureDefinition.class, def.getBaseDefinition());
  	  findMapKeys(base, maps, context);
  	}
  }*/
public void processElement(ElementDefinition ed) throws Exception {
    CSVLine line = new CSVLine();
    lines.add(line);
    line.addString(ed.getPath());
    line.addString(ed.getSliceName());
    line.addString(itemList(ed.getAlias()));
    line.addString(ed.getLabel());
    line.addValue(ed.getMin());
    line.addValue(ed.getMax());
    line.addString(ed.getMustSupport() ? "Y" : "");
    line.addString(ed.getIsModifier() ? "Y" : "");
    line.addString(ed.getIsSummary() ? "Y" : "");
    line.addString(itemList(ed.getType()));
    line.addString(ed.getShort());
    line.addString(ed.getDefinition());
    line.addString(ed.getComment());
    line.addString(ed.getRequirements());
    line.addString(ed.getDefaultValue() != null ? renderType(ed.getDefaultValue()) : "");
    line.addString(ed.getMeaningWhenMissing());
    line.addString(ed.hasFixed() ? renderType(ed.getFixed()) : "");
    line.addString(ed.hasPattern() ? renderType(ed.getPattern()) : "");
    // todo...?
    line.addString(ed.hasExample() ? renderType(ed.getExample().get(0).getValue()) : "");
    line.addString(ed.hasMinValue() ? renderType(ed.getMinValue()) : "");
    line.addString(ed.hasMaxValue() ? renderType(ed.getMaxValue()) : "");
    line.addValue((ed.hasMaxLength() ? Integer.toString(ed.getMaxLength()) : ""));
    if (ed.hasBinding()) {
        line.addString(ed.getBinding().getStrength() != null ? ed.getBinding().getStrength().toCode() : "");
        line.addString(ed.getBinding().getDescription());
        if (ed.getBinding().getValueSet() == null)
            line.addString("");
        else if (ed.getBinding().getValueSet() instanceof Reference)
            line.addString(ed.getBinding().getValueSetReference().getReference());
        else
            line.addString(ed.getBinding().getValueSetUriType().getValue());
    } else {
        line.addValue("");
        line.addValue("");
        line.addValue("");
    }
    line.addString(itemList(ed.getCode()));
    if (ed.hasSlicing()) {
        line.addString(itemList(ed.getSlicing().getDiscriminator()));
        line.addString(ed.getSlicing().getDescription());
        line.addBoolean(ed.getSlicing().getOrdered());
        line.addString(ed.getSlicing().getRules() != null ? ed.getSlicing().getRules().toCode() : "");
    } else {
        line.addValue("");
        line.addValue("");
        line.addValue("");
    }
    if (ed.getBase() != null) {
        line.addString(ed.getBase().getPath());
        line.addValue(ed.getBase().getMin());
        line.addValue(ed.getBase().getMax());
    } else {
        line.addValue("");
        line.addValue("");
        line.addValue("");
    }
    line.addString(itemList(ed.getCondition()));
    line.addString(itemList(ed.getConstraint()));
    for (StructureDefinitionMappingComponent mapKey : def.getMapping()) {
        for (ElementDefinitionMappingComponent map : ed.getMapping()) {
            if (map.getIdentity().equals(mapKey.getIdentity()))
                line.addString(map.getMap());
        }
    }
}

Example 32 with ElementDefinitionMappingComponent

use of org.hl7.fhir.dstu2.model.ElementDefinition.ElementDefinitionMappingComponent in project org.hl7.fhir.core by hapifhir.

the class XLSXWriter method processElement.

/*  private void findMapKeys(StructureDefinition def, List<StructureDefinitionMappingComponent> maps, IWorkerContext context) {
  	maps.addAll(def.getMapping());
  	if (def.getBaseDefinition()!=null) {
  	  StructureDefinition base = context.fetchResource(StructureDefinition.class, def.getBaseDefinition());
  	  findMapKeys(base, maps, context);
  	}
  }*/
public void processElement(ElementDefinition ed) throws Exception {
    Row row = sheet.createRow(sheet.getLastRowNum() + 1);
    int i = 0;
    addCell(row, i++, ed.getPath(), styles.get("body"));
    addCell(row, i++, ed.getSliceName());
    addCell(row, i++, itemList(ed.getAlias()));
    addCell(row, i++, ed.getLabel());
    addCell(row, i++, ed.getMin());
    addCell(row, i++, ed.getMax());
    addCell(row, i++, ed.getMustSupport() ? "Y" : "");
    addCell(row, i++, ed.getIsModifier() ? "Y" : "");
    addCell(row, i++, ed.getIsSummary() ? "Y" : "");
    addCell(row, i++, itemList(ed.getType()));
    addCell(row, i++, ed.getShort());
    addCell(row, i++, ed.getDefinition());
    addCell(row, i++, ed.getComment());
    addCell(row, i++, ed.getRequirements());
    addCell(row, i++, ed.getDefaultValue() != null ? renderType(ed.getDefaultValue()) : "");
    addCell(row, i++, ed.getMeaningWhenMissing());
    addCell(row, i++, ed.hasFixed() ? renderType(ed.getFixed()) : "");
    addCell(row, i++, ed.hasPattern() ? renderType(ed.getPattern()) : "");
    // todo...?
    addCell(row, i++, ed.hasExample() ? renderType(ed.getExample().get(0).getValue()) : "");
    addCell(row, i++, ed.hasMinValue() ? renderType(ed.getMinValue()) : "");
    addCell(row, i++, ed.hasMaxValue() ? renderType(ed.getMaxValue()) : "");
    addCell(row, i++, (ed.hasMaxLength() ? Integer.toString(ed.getMaxLength()) : ""));
    if (ed.hasBinding()) {
        addCell(row, i++, ed.getBinding().getStrength() != null ? ed.getBinding().getStrength().toCode() : "");
        addCell(row, i++, ed.getBinding().getDescription());
        if (ed.getBinding().getValueSet() == null)
            addCell(row, i++, "");
        else
            addCell(row, i++, ed.getBinding().getValueSet());
    } else {
        addCell(row, i++, "");
        addCell(row, i++, "");
        addCell(row, i++, "");
    }
    addCell(row, i++, itemList(ed.getCode()));
    if (ed.hasSlicing()) {
        addCell(row, i++, itemList(ed.getSlicing().getDiscriminator()));
        addCell(row, i++, ed.getSlicing().getDescription());
        addCell(row, i++, ed.getSlicing().getOrdered());
        addCell(row, i++, ed.getSlicing().getRules() != null ? ed.getSlicing().getRules().toCode() : "");
    } else {
        addCell(row, i++, "");
        addCell(row, i++, "");
        addCell(row, i++, "");
        addCell(row, i++, "");
    }
    if (ed.getBase() != null) {
        addCell(row, i++, ed.getBase().getPath());
        addCell(row, i++, ed.getBase().getMin());
        addCell(row, i++, ed.getBase().getMax());
    } else {
        addCell(row, i++, "");
        addCell(row, i++, "");
        addCell(row, i++, "");
    }
    addCell(row, i++, itemList(ed.getCondition()));
    addCell(row, i++, itemList(ed.getConstraint()));
    for (StructureDefinitionMappingComponent mapKey : def.getMapping()) {
        String mapString = "";
        for (ElementDefinitionMappingComponent map : ed.getMapping()) {
            if (map.getIdentity().equals(mapKey.getIdentity()))
                mapString = map.getMap();
        }
        addCell(row, i++, mapString);
    }
}

Example 33 with ElementDefinitionMappingComponent

use of org.hl7.fhir.dstu2.model.ElementDefinition.ElementDefinitionMappingComponent in project org.hl7.fhir.core by hapifhir.

the class ProfileComparer method mergeMappings.

private List<ElementDefinitionMappingComponent> mergeMappings(List<ElementDefinitionMappingComponent> left, List<ElementDefinitionMappingComponent> right) {
    List<ElementDefinitionMappingComponent> result = new ArrayList<ElementDefinitionMappingComponent>();
    result.addAll(left);
    for (ElementDefinitionMappingComponent c : right) {
        boolean found = false;
        for (ElementDefinitionMappingComponent ct : left) if (Utilities.equals(c.getIdentity(), ct.getIdentity()) && Utilities.equals(c.getLanguage(), ct.getLanguage()) && Utilities.equals(c.getMap(), ct.getMap()))
            found = true;
        if (!found)
            result.add(c);
    }
    return result;
}

Example 34 with ElementDefinitionMappingComponent

use of org.hl7.fhir.dstu2.model.ElementDefinition.ElementDefinitionMappingComponent in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method updateFromDefinition.

private void updateFromDefinition(ElementDefinition dest, ElementDefinition source, String pn, boolean trimDifferential, String purl, StructureDefinition srcSD) throws DefinitionException, FHIRException {
    source.setUserData(GENERATED_IN_SNAPSHOT, dest);
    // we start with a clone of the base profile ('dest') and we copy from the profile ('source')
    // over the top for anything the source has
    ElementDefinition base = dest;
    ElementDefinition derived = source;
    derived.setUserData(DERIVATION_POINTER, base);
    boolean isExtension = checkExtensionDoco(base);
    // Before applying changes, apply them to what's in the profile
    StructureDefinition profile = null;
    if (base.hasSliceName())
        profile = base.getType().size() == 1 && base.getTypeFirstRep().hasProfile() ? context.fetchResource(StructureDefinition.class, base.getTypeFirstRep().getProfile().get(0).getValue()) : null;
    if (profile == null)
        profile = source.getType().size() == 1 && source.getTypeFirstRep().hasProfile() ? context.fetchResource(StructureDefinition.class, source.getTypeFirstRep().getProfile().get(0).getValue()) : null;
    if (profile != null) {
        ElementDefinition e = profile.getSnapshot().getElement().get(0);
        String webroot = profile.getUserString("webroot");
        if (e.hasDefinition()) {
            base.setDefinition(processRelativeUrls(e.getDefinition(), webroot, baseSpecUrl(), context.getResourceNames(), masterSourceFileNames, null, true));
        }
        base.setShort(e.getShort());
        if (e.hasCommentElement())
            base.setCommentElement(e.getCommentElement());
        if (e.hasRequirementsElement())
            base.setRequirementsElement(e.getRequirementsElement());
        base.getAlias().clear();
        base.getAlias().addAll(e.getAlias());
        base.getMapping().clear();
        base.getMapping().addAll(e.getMapping());
    }
    if (derived != null) {
        if (derived.hasSliceName()) {
            base.setSliceName(derived.getSliceName());
        }
        if (derived.hasShortElement()) {
            if (!Base.compareDeep(derived.getShortElement(), base.getShortElement(), false))
                base.setShortElement(derived.getShortElement().copy());
            else if (trimDifferential)
                derived.setShortElement(null);
            else if (derived.hasShortElement())
                derived.getShortElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasDefinitionElement()) {
            if (derived.getDefinition().startsWith("..."))
                base.setDefinition(base.getDefinition() + "\r\n" + derived.getDefinition().substring(3));
            else if (!Base.compareDeep(derived.getDefinitionElement(), base.getDefinitionElement(), false))
                base.setDefinitionElement(derived.getDefinitionElement().copy());
            else if (trimDifferential)
                derived.setDefinitionElement(null);
            else if (derived.hasDefinitionElement())
                derived.getDefinitionElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasCommentElement()) {
            if (derived.getComment().startsWith("..."))
                base.setComment(base.getComment() + "\r\n" + derived.getComment().substring(3));
            else if (derived.hasCommentElement() != base.hasCommentElement() || !Base.compareDeep(derived.getCommentElement(), base.getCommentElement(), false))
                base.setCommentElement(derived.getCommentElement().copy());
            else if (trimDifferential)
                base.setCommentElement(derived.getCommentElement().copy());
            else if (derived.hasCommentElement())
                derived.getCommentElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasLabelElement()) {
            if (derived.getLabel().startsWith("..."))
                base.setLabel(base.getLabel() + "\r\n" + derived.getLabel().substring(3));
            else if (!base.hasLabelElement() || !Base.compareDeep(derived.getLabelElement(), base.getLabelElement(), false))
                base.setLabelElement(derived.getLabelElement().copy());
            else if (trimDifferential)
                base.setLabelElement(derived.getLabelElement().copy());
            else if (derived.hasLabelElement())
                derived.getLabelElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasRequirementsElement()) {
            if (derived.getRequirements().startsWith("..."))
                base.setRequirements(base.getRequirements() + "\r\n" + derived.getRequirements().substring(3));
            else if (!base.hasRequirementsElement() || !Base.compareDeep(derived.getRequirementsElement(), base.getRequirementsElement(), false))
                base.setRequirementsElement(derived.getRequirementsElement().copy());
            else if (trimDifferential)
                base.setRequirementsElement(derived.getRequirementsElement().copy());
            else if (derived.hasRequirementsElement())
                derived.getRequirementsElement().setUserData(DERIVATION_EQUALS, true);
        }
        // sdf-9
        if (derived.hasRequirements() && !base.getPath().contains("."))
            derived.setRequirements(null);
        if (base.hasRequirements() && !base.getPath().contains("."))
            base.setRequirements(null);
        if (derived.hasAlias()) {
            if (!Base.compareDeep(derived.getAlias(), base.getAlias(), false))
                for (StringType s : derived.getAlias()) {
                    if (!base.hasAlias(s.getValue()))
                        base.getAlias().add(s.copy());
                }
            else if (trimDifferential)
                derived.getAlias().clear();
            else
                for (StringType t : derived.getAlias()) t.setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMinElement()) {
            if (!Base.compareDeep(derived.getMinElement(), base.getMinElement(), false)) {
                if (// in a slice, minimum cardinality rules do not apply
                derived.getMin() < base.getMin() && !derived.hasSliceName())
                    messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + source.getPath(), "Element " + base.getPath() + ": derived min (" + Integer.toString(derived.getMin()) + ") cannot be less than base min (" + Integer.toString(base.getMin()) + ")", ValidationMessage.IssueSeverity.ERROR));
                base.setMinElement(derived.getMinElement().copy());
            } else if (trimDifferential)
                derived.setMinElement(null);
            else
                derived.getMinElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMaxElement()) {
            if (!Base.compareDeep(derived.getMaxElement(), base.getMaxElement(), false)) {
                if (isLargerMax(derived.getMax(), base.getMax()))
                    messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + source.getPath(), "Element " + base.getPath() + ": derived max (" + derived.getMax() + ") cannot be greater than base max (" + base.getMax() + ")", ValidationMessage.IssueSeverity.ERROR));
                base.setMaxElement(derived.getMaxElement().copy());
            } else if (trimDifferential)
                derived.setMaxElement(null);
            else
                derived.getMaxElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasFixed()) {
            if (!Base.compareDeep(derived.getFixed(), base.getFixed(), true)) {
                base.setFixed(derived.getFixed().copy());
            } else if (trimDifferential)
                derived.setFixed(null);
            else
                derived.getFixed().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasPattern()) {
            if (!Base.compareDeep(derived.getPattern(), base.getPattern(), false)) {
                base.setPattern(derived.getPattern().copy());
            } else if (trimDifferential)
                derived.setPattern(null);
            else
                derived.getPattern().setUserData(DERIVATION_EQUALS, true);
        }
        for (ElementDefinitionExampleComponent ex : derived.getExample()) {
            boolean found = false;
            for (ElementDefinitionExampleComponent exS : base.getExample()) if (Base.compareDeep(ex, exS, false))
                found = true;
            if (!found)
                base.addExample(ex.copy());
            else if (trimDifferential)
                derived.getExample().remove(ex);
            else
                ex.setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMaxLengthElement()) {
            if (!Base.compareDeep(derived.getMaxLengthElement(), base.getMaxLengthElement(), false))
                base.setMaxLengthElement(derived.getMaxLengthElement().copy());
            else if (trimDifferential)
                derived.setMaxLengthElement(null);
            else
                derived.getMaxLengthElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMaxValue()) {
            if (!Base.compareDeep(derived.getMaxValue(), base.getMaxValue(), false))
                base.setMaxValue(derived.getMaxValue().copy());
            else if (trimDifferential)
                derived.setMaxValue(null);
            else
                derived.getMaxValue().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMinValue()) {
            if (!Base.compareDeep(derived.getMinValue(), base.getMinValue(), false))
                base.setMinValue(derived.getMinValue().copy());
            else if (trimDifferential)
                derived.setMinValue(null);
            else
                derived.getMinValue().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMustSupportElement()) {
            if (!(base.hasMustSupportElement() && Base.compareDeep(derived.getMustSupportElement(), base.getMustSupportElement(), false))) {
                if (base.hasMustSupport() && base.getMustSupport() && !derived.getMustSupport()) {
                    messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + derived.getPath(), "Illegal constraint [must-support = false] when [must-support = true] in the base profile", ValidationMessage.IssueSeverity.ERROR));
                }
                base.setMustSupportElement(derived.getMustSupportElement().copy());
            } else if (trimDifferential)
                derived.setMustSupportElement(null);
            else
                derived.getMustSupportElement().setUserData(DERIVATION_EQUALS, true);
        }
        // but extensions can change isModifier
        if (isExtension) {
            if (derived.hasIsModifierElement() && !(base.hasIsModifierElement() && Base.compareDeep(derived.getIsModifierElement(), base.getIsModifierElement(), false)))
                base.setIsModifierElement(derived.getIsModifierElement().copy());
            else if (trimDifferential)
                derived.setIsModifierElement(null);
            else if (derived.hasIsModifierElement())
                derived.getIsModifierElement().setUserData(DERIVATION_EQUALS, true);
            if (derived.hasIsModifierReasonElement() && !(base.hasIsModifierReasonElement() && Base.compareDeep(derived.getIsModifierReasonElement(), base.getIsModifierReasonElement(), false)))
                base.setIsModifierReasonElement(derived.getIsModifierReasonElement().copy());
            else if (trimDifferential)
                derived.setIsModifierReasonElement(null);
            else if (derived.hasIsModifierReasonElement())
                derived.getIsModifierReasonElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasBinding()) {
            if (!base.hasBinding() || !Base.compareDeep(derived.getBinding(), base.getBinding(), false)) {
                if (base.hasBinding() && base.getBinding().getStrength() == BindingStrength.REQUIRED && derived.getBinding().getStrength() != BindingStrength.REQUIRED)
                    messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + derived.getPath(), "illegal attempt to change the binding on " + derived.getPath() + " from " + base.getBinding().getStrength().toCode() + " to " + derived.getBinding().getStrength().toCode(), ValidationMessage.IssueSeverity.ERROR));
                else // throw new DefinitionException("StructureDefinition "+pn+" at "+derived.getPath()+": illegal attempt to change a binding from "+base.getBinding().getStrength().toCode()+" to "+derived.getBinding().getStrength().toCode());
                if (base.hasBinding() && derived.hasBinding() && base.getBinding().getStrength() == BindingStrength.REQUIRED && base.getBinding().hasValueSet() && derived.getBinding().hasValueSet()) {
                    ValueSet baseVs = context.fetchResource(ValueSet.class, base.getBinding().getValueSet());
                    ValueSet contextVs = context.fetchResource(ValueSet.class, derived.getBinding().getValueSet());
                    if (baseVs == null) {
                        messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + base.getPath(), "Binding " + base.getBinding().getValueSet() + " could not be located", ValidationMessage.IssueSeverity.WARNING));
                    } else if (contextVs == null) {
                        messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + derived.getPath(), "Binding " + derived.getBinding().getValueSet() + " could not be located", ValidationMessage.IssueSeverity.WARNING));
                    } else {
                        ValueSetExpansionOutcome expBase = context.expandVS(baseVs, true, false);
                        ValueSetExpansionOutcome expDerived = context.expandVS(contextVs, true, false);
                        if (expBase.getValueset() == null)
                            messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + base.getPath(), "Binding " + base.getBinding().getValueSet() + " could not be expanded", ValidationMessage.IssueSeverity.WARNING));
                        else if (expDerived.getValueset() == null)
                            messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + derived.getPath(), "Binding " + derived.getBinding().getValueSet() + " could not be expanded", ValidationMessage.IssueSeverity.WARNING));
                        else if (ToolingExtensions.hasExtension(expBase.getValueset().getExpansion(), ToolingExtensions.EXT_EXP_TOOCOSTLY))
                            messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + derived.getPath(), "Unable to check if " + derived.getBinding().getValueSet() + " is a proper subset of " + base.getBinding().getValueSet() + " - base value set is too large to check", ValidationMessage.IssueSeverity.WARNING));
                        else if (!isSubset(expBase.getValueset(), expDerived.getValueset()))
                            messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + derived.getPath(), "Binding " + derived.getBinding().getValueSet() + " is not a subset of binding " + base.getBinding().getValueSet(), ValidationMessage.IssueSeverity.ERROR));
                    }
                }
                ElementDefinitionBindingComponent d = derived.getBinding();
                ElementDefinitionBindingComponent nb = base.getBinding().copy();
                if (!COPY_BINDING_EXTENSIONS) {
                    nb.getExtension().clear();
                }
                nb.setDescription(null);
                nb.getExtension().addAll(d.getExtension());
                if (d.hasStrength()) {
                    nb.setStrength(d.getStrength());
                }
                if (d.hasDescription()) {
                    nb.setDescription(d.getDescription());
                }
                if (d.hasValueSet()) {
                    nb.setValueSet(d.getValueSet());
                }
                base.setBinding(nb);
            } else if (trimDifferential)
                derived.setBinding(null);
            else
                derived.getBinding().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasIsSummaryElement()) {
            if (!Base.compareDeep(derived.getIsSummaryElement(), base.getIsSummaryElement(), false)) {
                if (// work around a known issue with some 1.4.0 cosntraints
                base.hasIsSummary() && !context.getVersion().equals("1.4.0"))
                    throw new Error(context.formatMessage(I18nConstants.ERROR_IN_PROFILE__AT__BASE_ISSUMMARY___DERIVED_ISSUMMARY__, purl, derived.getPath(), base.getIsSummaryElement().asStringValue(), derived.getIsSummaryElement().asStringValue()));
                base.setIsSummaryElement(derived.getIsSummaryElement().copy());
            } else if (trimDifferential)
                derived.setIsSummaryElement(null);
            else
                derived.getIsSummaryElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasType()) {
            if (!Base.compareDeep(derived.getType(), base.getType(), false)) {
                if (base.hasType()) {
                    for (TypeRefComponent ts : derived.getType()) {
                        checkTypeDerivation(purl, srcSD, base, derived, ts);
                    }
                }
                base.getType().clear();
                for (TypeRefComponent t : derived.getType()) {
                    TypeRefComponent tt = t.copy();
                    // tt.setUserData(DERIVATION_EQUALS, true);
                    base.getType().add(tt);
                }
            } else if (trimDifferential)
                derived.getType().clear();
            else
                for (TypeRefComponent t : derived.getType()) t.setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMapping()) {
            // todo: mappings are not cumulative - one replaces another
            if (!Base.compareDeep(derived.getMapping(), base.getMapping(), false)) {
                for (ElementDefinitionMappingComponent s : derived.getMapping()) {
                    boolean found = false;
                    for (ElementDefinitionMappingComponent d : base.getMapping()) {
                        found = found || (d.getIdentity().equals(s.getIdentity()) && d.getMap().equals(s.getMap()));
                    }
                    if (!found) {
                        base.getMapping().add(s);
                    }
                }
            } else if (trimDifferential) {
                derived.getMapping().clear();
            } else {
                for (ElementDefinitionMappingComponent t : derived.getMapping()) {
                    t.setUserData(DERIVATION_EQUALS, true);
                }
            }
        }
        for (ElementDefinitionMappingComponent m : base.getMapping()) {
            if (m.hasMap()) {
                m.setMap(m.getMap().trim());
            }
        }
        // todo: constraints are cumulative. there is no replacing
        for (ElementDefinitionConstraintComponent s : base.getConstraint()) {
            s.setUserData(IS_DERIVED, true);
            if (!s.hasSource()) {
                s.setSource(srcSD.getUrl());
            }
        }
        if (derived.hasConstraint()) {
            for (ElementDefinitionConstraintComponent s : derived.getConstraint()) {
                if (!base.hasConstraint(s.getKey())) {
                    ElementDefinitionConstraintComponent inv = s.copy();
                    base.getConstraint().add(inv);
                }
            }
        }
        for (IdType id : derived.getCondition()) {
            if (!base.hasCondition(id)) {
                base.getCondition().add(id);
            }
        }
        // now, check that we still have a bindable type; if not, delete the binding - see task 8477
        if (dest.hasBinding() && !hasBindableType(dest)) {
            dest.setBinding(null);
        }
        // finally, we copy any extensions from source to dest
        for (Extension ex : derived.getExtension()) {
            StructureDefinition sd = context.fetchResource(StructureDefinition.class, ex.getUrl());
            if (sd == null || sd.getSnapshot() == null || sd.getSnapshot().getElementFirstRep().getMax().equals("1")) {
                ToolingExtensions.removeExtension(dest, ex.getUrl());
            }
            dest.addExtension(ex.copy());
        }
    }
    if (dest.hasFixed()) {
        checkTypeOk(dest, dest.getFixed().fhirType(), srcSD);
    }
    if (dest.hasPattern()) {
        checkTypeOk(dest, dest.getPattern().fhirType(), srcSD);
    }
}

Example 35 with ElementDefinitionMappingComponent

use of org.hl7.fhir.dstu2.model.ElementDefinition.ElementDefinitionMappingComponent in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method generateGridDescription.

private Cell generateGridDescription(HierarchicalTableGenerator gen, Row row, ElementDefinition definition, ElementDefinition fallback, boolean used, String baseURL, String url, StructureDefinition profile, String corePath, String imagePath, boolean root, ElementDefinition valueDefn) throws IOException, FHIRException {
    Cell c = gen.new Cell();
    row.getCells().add(c);
    if (used) {
        if (definition.hasContentReference()) {
            ElementInStructure ed = getElementByName(profile.getSnapshot().getElement(), definition.getContentReference(), profile);
            if (ed == null)
                c.getPieces().add(gen.new Piece(null, "Unknown reference to " + definition.getContentReference(), null));
            else {
                if (ed.getSource() == profile) {
                    c.getPieces().add(gen.new Piece("#" + ed.getElement().getPath(), "See " + ed.getElement().getPath(), null));
                } else {
                    c.getPieces().add(gen.new Piece(ed.getSource().getUserData("path") + "#" + ed.getElement().getPath(), "See " + ed.getSource().getType() + "." + ed.getElement().getPath(), null));
                }
            }
        }
        if (definition.getPath().endsWith("url") && definition.hasFixed()) {
            c.getPieces().add(checkForNoChange(definition.getFixed(), gen.new Piece(null, "\"" + buildJson(definition.getFixed()) + "\"", null).addStyle("color: darkgreen")));
        } else {
            if (url != null) {
                if (!c.getPieces().isEmpty())
                    c.addPiece(gen.new Piece("br"));
                String fullUrl = url.startsWith("#") ? baseURL + url : url;
                StructureDefinition ed = context.fetchResource(StructureDefinition.class, url);
                String ref = null;
                if (ed != null) {
                    String p = ed.getUserString("path");
                    if (p != null) {
                        ref = p.startsWith("http:") || igmode ? p : Utilities.pathURL(corePath, p);
                    }
                }
                c.getPieces().add(gen.new Piece(null, "URL: ", null).addStyle("font-weight:bold"));
                c.getPieces().add(gen.new Piece(ref, fullUrl, null));
            }
            if (definition.hasSlicing()) {
                if (!c.getPieces().isEmpty()) {
                    c.addPiece(gen.new Piece("br"));
                }
                c.getPieces().add(gen.new Piece(null, "Slice: ", null).addStyle("font-weight:bold"));
                c.getPieces().add(gen.new Piece(null, describeSlice(definition.getSlicing()), null));
            }
            if (definition != null) {
                ElementDefinitionBindingComponent binding = null;
                if (valueDefn != null && valueDefn.hasBinding() && !valueDefn.getBinding().isEmpty())
                    binding = valueDefn.getBinding();
                else if (definition.hasBinding())
                    binding = definition.getBinding();
                if (binding != null && !binding.isEmpty()) {
                    if (!c.getPieces().isEmpty())
                        c.addPiece(gen.new Piece("br"));
                    BindingResolution br = pkp.resolveBinding(profile, binding, definition.getPath());
                    c.getPieces().add(checkForNoChange(binding, gen.new Piece(null, "Binding: ", null).addStyle("font-weight:bold")));
                    c.getPieces().add(checkForNoChange(binding, gen.new Piece(br.url == null ? null : Utilities.isAbsoluteUrl(br.url) || !pkp.prependLinks() ? br.url : corePath + br.url, br.display, null)));
                    if (binding.hasStrength()) {
                        c.getPieces().add(checkForNoChange(binding, gen.new Piece(null, " (", null)));
                        c.getPieces().add(checkForNoChange(binding, gen.new Piece(corePath + "terminologies.html#" + binding.getStrength().toCode(), binding.getStrength().toCode(), binding.getStrength().getDefinition())));
                        c.getPieces().add(gen.new Piece(null, ")", null));
                    }
                    if (binding.hasDescription() && MarkDownProcessor.isSimpleMarkdown(binding.getDescription())) {
                        c.getPieces().add(gen.new Piece(null, ": ", null));
                        c.addMarkdownNoPara(PublicationHacker.fixBindingDescriptions(context, binding.getDescriptionElement()).asStringValue());
                    }
                }
                for (ElementDefinitionConstraintComponent inv : definition.getConstraint()) {
                    if (!c.getPieces().isEmpty()) {
                        c.addPiece(gen.new Piece("br"));
                    }
                    c.getPieces().add(checkForNoChange(inv, gen.new Piece(null, inv.getKey() + ": ", null).addStyle("font-weight:bold")));
                    if (inv.getHumanElement().hasExtension("http://hl7.org/fhir/StructureDefinition/rendering-markdown")) {
                        c.addMarkdown(inv.getHumanElement().getExtensionString("http://hl7.org/fhir/StructureDefinition/rendering-markdown"));
                    } else {
                        c.getPieces().add(checkForNoChange(inv, gen.new Piece(null, inv.getHuman(), null)));
                    }
                }
                if (definition.hasFixed()) {
                    if (!c.getPieces().isEmpty()) {
                        c.addPiece(gen.new Piece("br"));
                    }
                    c.getPieces().add(checkForNoChange(definition.getFixed(), gen.new Piece(null, "Fixed Value: ", null).addStyle("font-weight:bold")));
                    String s = buildJson(definition.getFixed());
                    String link = null;
                    if (Utilities.isAbsoluteUrl(s))
                        link = pkp.getLinkForUrl(corePath, s);
                    c.getPieces().add(checkForNoChange(definition.getFixed(), gen.new Piece(link, s, null).addStyle("color: darkgreen")));
                } else if (definition.hasPattern()) {
                    if (!c.getPieces().isEmpty()) {
                        c.addPiece(gen.new Piece("br"));
                    }
                    c.getPieces().add(checkForNoChange(definition.getPattern(), gen.new Piece(null, "Required Pattern: ", null).addStyle("font-weight:bold")));
                    c.getPieces().add(checkForNoChange(definition.getPattern(), gen.new Piece(null, buildJson(definition.getPattern()), null).addStyle("color: darkgreen")));
                } else if (definition.hasExample()) {
                    for (ElementDefinitionExampleComponent ex : definition.getExample()) {
                        if (!c.getPieces().isEmpty()) {
                            c.addPiece(gen.new Piece("br"));
                        }
                        c.getPieces().add(checkForNoChange(ex, gen.new Piece(null, "Example'" + ("".equals("General") ? "" : " " + ex.getLabel() + "'") + ": ", null).addStyle("font-weight:bold")));
                        c.getPieces().add(checkForNoChange(ex, gen.new Piece(null, buildJson(ex.getValue()), null).addStyle("color: darkgreen")));
                    }
                }
                if (definition.hasMaxLength() && definition.getMaxLength() != 0) {
                    if (!c.getPieces().isEmpty()) {
                        c.addPiece(gen.new Piece("br"));
                    }
                    c.getPieces().add(checkForNoChange(definition.getMaxLengthElement(), gen.new Piece(null, "Max Length: ", null).addStyle("font-weight:bold")));
                    c.getPieces().add(checkForNoChange(definition.getMaxLengthElement(), gen.new Piece(null, Integer.toString(definition.getMaxLength()), null).addStyle("color: darkgreen")));
                }
                if (profile != null) {
                    for (StructureDefinitionMappingComponent md : profile.getMapping()) {
                        if (md.hasExtension(ToolingExtensions.EXT_TABLE_NAME)) {
                            ElementDefinitionMappingComponent map = null;
                            for (ElementDefinitionMappingComponent m : definition.getMapping()) if (m.getIdentity().equals(md.getIdentity()))
                                map = m;
                            if (map != null) {
                                for (int i = 0; i < definition.getMapping().size(); i++) {
                                    c.addPiece(gen.new Piece("br"));
                                    c.getPieces().add(gen.new Piece(null, ToolingExtensions.readStringExtension(md, ToolingExtensions.EXT_TABLE_NAME) + ": " + map.getMap(), null));
                                }
                            }
                        }
                    }
                }
                if (definition.hasDefinition()) {
                    if (!c.getPieces().isEmpty()) {
                        c.addPiece(gen.new Piece("br"));
                    }
                    c.getPieces().add(gen.new Piece(null, "Definition: ", null).addStyle("font-weight:bold"));
                    c.addPiece(gen.new Piece("br"));
                    c.addMarkdown(definition.getDefinition());
                // c.getPieces().add(checkForNoChange(definition.getCommentElement(), gen.new Piece(null, definition.getComment(), null)));
                }
                if (definition.getComment() != null) {
                    if (!c.getPieces().isEmpty()) {
                        c.addPiece(gen.new Piece("br"));
                    }
                    c.getPieces().add(gen.new Piece(null, "Comments: ", null).addStyle("font-weight:bold"));
                    c.addPiece(gen.new Piece("br"));
                    c.addMarkdown(definition.getComment());
                // c.getPieces().add(checkForNoChange(definition.getCommentElement(), gen.new Piece(null, definition.getComment(), null)));
                }
            }
        }
    }
    return c;
}