Examples with ElementDefinitionMappingComponent org.hl7.fhir.r5.model.ElementDefinition.ElementDefinitionMappingComponent used on opensource projects

Example 1 with ElementDefinitionMappingComponent

use of org.hl7.fhir.r5.model.ElementDefinition.ElementDefinitionMappingComponent in project kindling by HL7.

the class ResourceParser method parseED.

private void parseED(ProfileUtilities pu, ElementDefn ed, ElementDefinition focus, StructureDefinition sd, String parentName) throws IOException {
    ed.setMinCardinality(focus.getMin());
    ed.setMaxCardinality("*".equals(focus.getMax()) ? Integer.MAX_VALUE : Integer.parseInt(focus.getMax()));
    ed.setIsModifier(focus.getIsModifier());
    ed.setModifierReason(focus.getIsModifierReason());
    ed.setMustSupport(focus.getMustSupport());
    ed.setSummaryItem(focus.getIsSummary());
    ed.setRegex(ToolingExtensions.readStringExtension(focus, ToolingExtensions.EXT_REGEX));
    ed.setXmlAttribute(focus.hasRepresentation(PropertyRepresentation.XMLATTR));
    if (ToolingExtensions.hasExtension(focus, BuildExtensions.EXT_UML_DIR)) {
        ed.setUmlDir(ToolingExtensions.readStringExtension(focus, BuildExtensions.EXT_UML_DIR));
    }
    if (ToolingExtensions.hasExtension(focus, BuildExtensions.EXT_UML_BREAK)) {
        ed.setUmlBreak(ToolingExtensions.readBoolExtension(focus, BuildExtensions.EXT_UML_BREAK));
    }
    if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_SVG)) {
        String svg = BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_SVG);
        if (svg.contains("w=")) {
            ed.setSvgWidth(Integer.parseInt(svg.substring(svg.indexOf("w=") + 2)));
            svg = svg.substring(0, svg.indexOf(";"));
        }
        ed.setSvgLeft(Integer.parseInt(svg.substring(0, svg.indexOf(","))));
        ed.setSvgTop(Integer.parseInt(svg.substring(svg.indexOf(",") + 1)));
    }
    ed.setName(tail(focus.getPath()));
    ed.setShortDefn(focus.getShort());
    ed.setDefinition(focus.getDefinition());
    ed.setRequirements(focus.getRequirements());
    ed.setComments(focus.getComment());
    if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_TODO)) {
        ed.setTodo(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_TODO));
    }
    if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_COMMITTEE_NOTES)) {
        ed.setCommitteeNotes(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_COMMITTEE_NOTES));
    }
    if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_HINT)) {
        ed.setDisplayHint(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_HINT));
    }
    if (focus.hasExtension(BuildExtensions.EXT_NO_BINDING)) {
        ed.setNoBindingAllowed(focus.getExtensionString(BuildExtensions.EXT_NO_BINDING).equals("true"));
    }
    for (StringType t : focus.getAlias()) {
        ed.getAliases().add(t.getValue());
    }
    if (focus.hasMaxLength()) {
        ed.setMaxLength(Integer.toString(focus.getMaxLength()));
    }
    ed.setExample(focus.getExampleFirstRep().getValue());
    ed.setMeaningWhenMissing(focus.getMeaningWhenMissing());
    if (ToolingExtensions.hasExtension(focus, BuildExtensions.EXT_TRANSLATABLE)) {
        ed.setTranslatable(ToolingExtensions.readBoolExtension(focus, BuildExtensions.EXT_TRANSLATABLE));
    }
    ed.setOrderMeaning(focus.getOrderMeaning());
    if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_STANDARDS_STATUS)) {
        ed.setStandardsStatus(StandardsStatus.fromCode(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_STANDARDS_STATUS)));
    }
    if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_NORMATIVE_VERSION)) {
        ed.setNormativeVersion(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_NORMATIVE_VERSION));
    }
    for (ElementDefinitionConstraintComponent cst : focus.getConstraint()) {
        Invariant inv = new Invariant();
        inv.setContext(focus.getPath());
        inv.setEnglish(cst.getHuman());
        if (cst.hasExtension(BuildExtensions.EXT_OCL)) {
            inv.setOcl(cst.getExtensionString(BuildExtensions.EXT_OCL));
        }
        inv.setXpath(cst.getXpath());
        inv.setId(cst.getKey());
        if (cst.hasExtension(BuildExtensions.EXT_FIXED_NAME)) {
            inv.setFixedName(cst.getExtensionString(BuildExtensions.EXT_FIXED_NAME));
        }
        inv.setSeverity(cst.getSeverity().toCode());
        if (cst.hasExtension(BuildExtensions.EXT_BEST_PRACTICE)) {
            inv.setSeverity("best-practice");
        }
        if (cst.hasExtension(BuildExtensions.EXT_TURTLE)) {
            inv.setTurtle(cst.getExtensionString(BuildExtensions.EXT_TURTLE));
        }
        inv.setRequirements(cst.getRequirements());
        inv.setExpression(cst.getExpression());
        if (cst.hasExtension(BuildExtensions.EXT_BEST_PRACTICE_EXPLANATION)) {
            inv.setExplanation(cst.getExtensionString(BuildExtensions.EXT_BEST_PRACTICE_EXPLANATION));
        }
        ed.getInvariants().put(inv.getId(), inv);
        invariants.put(inv.getId(), inv);
    }
    for (IdType cnd : focus.getCondition()) {
        Invariant inv = invariants.get(cnd.primitiveValue());
        if (inv == null) {
            System.out.println("Unable to find invariant " + cnd.primitiveValue());
        } else {
            ed.getStatedInvariants().add(inv);
        }
    }
    for (ElementDefinitionMappingComponent map : focus.getMapping()) {
        String uri = getMappingUri(sd, map.getIdentity());
        if ("http://hl7.org/fhir/fivews".equals(uri)) {
            ed.setW5(reverseW5(map.getMap()));
        } else {
            ed.getMappings().put(uri, map.getMap());
        }
    }
    if (focus.hasContentReference()) {
        ed.getTypes().add(new TypeRef("@" + focus.getContentReference().substring(1)));
    } else {
        for (TypeRefComponent tr : focus.getType()) {
            if (!Utilities.existsInList(tr.getCode(), "Element", "BackboneElement")) {
                TypeRef t = new TypeRef();
                ed.getTypes().add(t);
                if (tr.hasExtension("http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type")) {
                    t.setName(tr.getExtensionString("http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type"));
                } else {
                    t.setName(tr.getCode());
                }
                if (ToolingExtensions.hasExtension(tr, BuildExtensions.EXT_HIERARCHY)) {
                    ed.setHierarchy(ToolingExtensions.readBoolExtension(tr, BuildExtensions.EXT_HIERARCHY));
                }
                for (CanonicalType u : tr.getProfile()) {
                    t.setProfile(u.getValue().replace("http://hl7.org/fhir/StructureDefinition/", ""));
                }
                for (CanonicalType u : tr.getTargetProfile()) {
                    String s = u.getValue().replace("http://hl7.org/fhir/StructureDefinition/", "");
                    if ("Resource".equals(s)) {
                        t.getParams().add("Any");
                    } else {
                        t.getParams().add(s);
                    }
                }
                if (t.getName().equals("Quantity") && "SimpleQuantity".equals(t.getProfile())) {
                    t.setName("SimpleQuantity");
                    t.setProfile(null);
                }
                if ("Resource".equals(t.getProfile())) {
                    t.setProfile("Any");
                }
                if (t.getParams().toString().equals("[ActivityDefinition, EventDefinition, EvidenceVariable, Measure, OperationDefinition, PlanDefinition, Questionnaire, SubscriptionTopic]")) {
                    t.getParams().clear();
                    t.getParams().add("Definition");
                }
            }
        }
        if (ed.getTypes().size() == STAR_TYPES_COUNT) {
            ed.getTypes().clear();
            ed.getTypes().add(new TypeRef("*"));
        }
    }
    String name = parentName + Utilities.capitalize(ed.getName());
    if (focus.hasExtension("http://hl7.org/fhir/StructureDefinition/structuredefinition-explicit-type-name")) {
        ed.setStatedType(focus.getExtensionString("http://hl7.org/fhir/StructureDefinition/structuredefinition-explicit-type-name"));
        ed.setDeclaredTypeName(ed.getStatedType());
    } else if (ed.getTypes().isEmpty() && !focus.hasContentReference()) {
        ed.setDeclaredTypeName(name + "Component");
    }
    if (focus.hasBinding()) {
        ed.setBinding(parseBinding(focus.getBinding()));
    }
    for (ElementDefinition child : pu.getChildList(sd, focus, true, false)) {
        ElementDefn c = new ElementDefn();
        ed.getElements().add(c);
        parseED(pu, c, child, sd, name);
    }
// todo:
// private ElementDefinition derivation;
}

Example 2 with ElementDefinitionMappingComponent

use of org.hl7.fhir.r5.model.ElementDefinition.ElementDefinitionMappingComponent in project kindling by HL7.

the class MappingsGenerator method genElement.

private void genElement(StringBuilder s, ElementDefinition e, String id) {
    s.append(" <tr><td>");
    boolean root = true;
    for (char c : e.getPath().toCharArray()) if (c == '.') {
        s.append("&nbsp;");
        s.append("&nbsp;");
        s.append("&nbsp;");
        root = false;
    }
    if (root)
        s.append(e.getPath());
    else
        s.append(tail(e.getPath()));
    s.append("</td><td>" + Utilities.escapeXml(e.getSliceName()) + "</td>");
    ElementDefinitionMappingComponent m = getMap(e, id);
    if (m == null)
        s.append("<td></td>");
    else
        s.append("<td>" + Utilities.escapeXml(m.getMap()) + "</td>");
    s.append(" </tr>\r\n");
}

Example 3 with ElementDefinitionMappingComponent

use of org.hl7.fhir.r5.model.ElementDefinition.ElementDefinitionMappingComponent in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method updateFromDefinition.

private void updateFromDefinition(ElementDefinition dest, ElementDefinition source, String pn, boolean trimDifferential, String purl) throws DefinitionException, FHIRException {
    source.setUserData(GENERATED_IN_SNAPSHOT, true);
    // we start with a clone of the base profile ('dest') and we copy from the profile ('source')
    // over the top for anything the source has
    ElementDefinition base = dest;
    ElementDefinition derived = source;
    derived.setUserData(DERIVATION_POINTER, base);
    // Before applying changes, apply them to what's in the profile
    // TODO: follow Chris's rules
    StructureDefinition profile = source.getType().size() == 1 && source.getTypeFirstRep().hasProfile() ? context.fetchResource(StructureDefinition.class, source.getTypeFirstRep().getProfile()) : null;
    if (profile != null) {
        ElementDefinition e = profile.getSnapshot().getElement().get(0);
        base.setDefinition(e.getDefinition());
        base.setShort(e.getShort());
        if (e.hasCommentElement())
            base.setCommentElement(e.getCommentElement());
        if (e.hasRequirementsElement())
            base.setRequirementsElement(e.getRequirementsElement());
        base.getAlias().clear();
        base.getAlias().addAll(e.getAlias());
        base.getMapping().clear();
        base.getMapping().addAll(e.getMapping());
    }
    if (derived != null) {
        boolean isExtension = checkExtensionDoco(base);
        if (derived.hasSliceName()) {
            base.setSliceName(derived.getSliceName());
        }
        if (derived.hasShortElement()) {
            if (!Base.compareDeep(derived.getShortElement(), base.getShortElement(), false))
                base.setShortElement(derived.getShortElement().copy());
            else if (trimDifferential)
                derived.setShortElement(null);
            else if (derived.hasShortElement())
                derived.getShortElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasDefinitionElement()) {
            if (derived.getDefinition().startsWith("..."))
                base.setDefinition(base.getDefinition() + "\r\n" + derived.getDefinition().substring(3));
            else if (!Base.compareDeep(derived.getDefinitionElement(), base.getDefinitionElement(), false))
                base.setDefinitionElement(derived.getDefinitionElement().copy());
            else if (trimDifferential)
                derived.setDefinitionElement(null);
            else if (derived.hasDefinitionElement())
                derived.getDefinitionElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasCommentElement()) {
            if (derived.getComment().startsWith("..."))
                base.setComment(base.getComment() + "\r\n" + derived.getComment().substring(3));
            else if (derived.hasCommentElement() != base.hasCommentElement() || !Base.compareDeep(derived.getCommentElement(), base.getCommentElement(), false))
                base.setCommentElement(derived.getCommentElement().copy());
            else if (trimDifferential)
                base.setCommentElement(derived.getCommentElement().copy());
            else if (derived.hasCommentElement())
                derived.getCommentElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasLabelElement()) {
            if (derived.getLabel().startsWith("..."))
                base.setLabel(base.getLabel() + "\r\n" + derived.getLabel().substring(3));
            else if (!base.hasLabelElement() || !Base.compareDeep(derived.getLabelElement(), base.getLabelElement(), false))
                base.setLabelElement(derived.getLabelElement().copy());
            else if (trimDifferential)
                base.setLabelElement(derived.getLabelElement().copy());
            else if (derived.hasLabelElement())
                derived.getLabelElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasRequirementsElement()) {
            if (derived.getRequirements().startsWith("..."))
                base.setRequirements(base.getRequirements() + "\r\n" + derived.getRequirements().substring(3));
            else if (!base.hasRequirementsElement() || !Base.compareDeep(derived.getRequirementsElement(), base.getRequirementsElement(), false))
                base.setRequirementsElement(derived.getRequirementsElement().copy());
            else if (trimDifferential)
                base.setRequirementsElement(derived.getRequirementsElement().copy());
            else if (derived.hasRequirementsElement())
                derived.getRequirementsElement().setUserData(DERIVATION_EQUALS, true);
        }
        // sdf-9
        if (derived.hasRequirements() && !base.getPath().contains("."))
            derived.setRequirements(null);
        if (base.hasRequirements() && !base.getPath().contains("."))
            base.setRequirements(null);
        if (derived.hasAlias()) {
            if (!Base.compareDeep(derived.getAlias(), base.getAlias(), false))
                for (StringType s : derived.getAlias()) {
                    if (!base.hasAlias(s.getValue()))
                        base.getAlias().add(s.copy());
                }
            else if (trimDifferential)
                derived.getAlias().clear();
            else
                for (StringType t : derived.getAlias()) t.setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMinElement()) {
            if (!Base.compareDeep(derived.getMinElement(), base.getMinElement(), false)) {
                if (derived.getMin() < base.getMin())
                    messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + source.getPath(), "Derived min  (" + Integer.toString(derived.getMin()) + ") cannot be less than base min (" + Integer.toString(base.getMin()) + ")", ValidationMessage.IssueSeverity.ERROR));
                base.setMinElement(derived.getMinElement().copy());
            } else if (trimDifferential)
                derived.setMinElement(null);
            else
                derived.getMinElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMaxElement()) {
            if (!Base.compareDeep(derived.getMaxElement(), base.getMaxElement(), false)) {
                if (isLargerMax(derived.getMax(), base.getMax()))
                    messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + source.getPath(), "Derived max (" + derived.getMax() + ") cannot be greater than base max (" + base.getMax() + ")", ValidationMessage.IssueSeverity.ERROR));
                base.setMaxElement(derived.getMaxElement().copy());
            } else if (trimDifferential)
                derived.setMaxElement(null);
            else
                derived.getMaxElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasFixed()) {
            if (!Base.compareDeep(derived.getFixed(), base.getFixed(), true)) {
                base.setFixed(derived.getFixed().copy());
            } else if (trimDifferential)
                derived.setFixed(null);
            else
                derived.getFixed().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasPattern()) {
            if (!Base.compareDeep(derived.getPattern(), base.getPattern(), false)) {
                base.setPattern(derived.getPattern().copy());
            } else if (trimDifferential)
                derived.setPattern(null);
            else
                derived.getPattern().setUserData(DERIVATION_EQUALS, true);
        }
        for (ElementDefinitionExampleComponent ex : derived.getExample()) {
            boolean found = false;
            for (ElementDefinitionExampleComponent exS : base.getExample()) if (Base.compareDeep(ex, exS, false))
                found = true;
            if (!found)
                base.addExample(ex.copy());
            else if (trimDifferential)
                derived.getExample().remove(ex);
            else
                ex.setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMaxLengthElement()) {
            if (!Base.compareDeep(derived.getMaxLengthElement(), base.getMaxLengthElement(), false))
                base.setMaxLengthElement(derived.getMaxLengthElement().copy());
            else if (trimDifferential)
                derived.setMaxLengthElement(null);
            else
                derived.getMaxLengthElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMaxValue()) {
            if (!Base.compareDeep(derived.getMaxValue(), base.getMaxValue(), false))
                base.setMaxValue(derived.getMaxValue().copy());
            else if (trimDifferential)
                derived.setMaxValue(null);
            else
                derived.getMaxValue().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMinValue()) {
            if (!Base.compareDeep(derived.getMinValue(), base.getMinValue(), false))
                base.setMinValue(derived.getMinValue().copy());
            else if (trimDifferential)
                derived.setMinValue(null);
            else
                derived.getMinValue().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMustSupportElement()) {
            if (!(base.hasMustSupportElement() && Base.compareDeep(derived.getMustSupportElement(), base.getMustSupportElement(), false)))
                base.setMustSupportElement(derived.getMustSupportElement().copy());
            else if (trimDifferential)
                derived.setMustSupportElement(null);
            else
                derived.getMustSupportElement().setUserData(DERIVATION_EQUALS, true);
        }
        // but extensions can change isModifier
        if (isExtension) {
            if (derived.hasIsModifierElement() && !(base.hasIsModifierElement() && Base.compareDeep(derived.getIsModifierElement(), base.getIsModifierElement(), false)))
                base.setIsModifierElement(derived.getIsModifierElement().copy());
            else if (trimDifferential)
                derived.setIsModifierElement(null);
            else if (derived.hasIsModifierElement())
                derived.getIsModifierElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasBinding()) {
            if (!base.hasBinding() || !Base.compareDeep(derived.getBinding(), base.getBinding(), false)) {
                if (base.hasBinding() && base.getBinding().getStrength() == BindingStrength.REQUIRED && derived.getBinding().getStrength() != BindingStrength.REQUIRED)
                    messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + derived.getPath(), "illegal attempt to change the binding on " + derived.getPath() + " from " + base.getBinding().getStrength().toCode() + " to " + derived.getBinding().getStrength().toCode(), ValidationMessage.IssueSeverity.ERROR));
                else // throw new DefinitionException("StructureDefinition "+pn+" at "+derived.getPath()+": illegal attempt to change a binding from "+base.getBinding().getStrength().toCode()+" to "+derived.getBinding().getStrength().toCode());
                if (base.hasBinding() && derived.hasBinding() && base.getBinding().getStrength() == BindingStrength.REQUIRED && base.getBinding().hasValueSetReference() && derived.getBinding().hasValueSetReference()) {
                    ValueSetExpansionOutcome expBase = context.expandVS(context.fetchResource(ValueSet.class, base.getBinding().getValueSetReference().getReference()), true, false);
                    ValueSetExpansionOutcome expDerived = context.expandVS(context.fetchResource(ValueSet.class, derived.getBinding().getValueSetReference().getReference()), true, false);
                    if (expBase.getValueset() == null)
                        messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + base.getPath(), "Binding " + base.getBinding().getValueSetReference().getReference() + " could not be expanded", ValidationMessage.IssueSeverity.WARNING));
                    else if (expDerived.getValueset() == null)
                        messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + derived.getPath(), "Binding " + derived.getBinding().getValueSetReference().getReference() + " could not be expanded", ValidationMessage.IssueSeverity.WARNING));
                    else if (!isSubset(expBase.getValueset(), expDerived.getValueset()))
                        messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + derived.getPath(), "Binding " + derived.getBinding().getValueSetReference().getReference() + " is not a subset of binding " + base.getBinding().getValueSetReference().getReference(), ValidationMessage.IssueSeverity.ERROR));
                }
                base.setBinding(derived.getBinding().copy());
            } else if (trimDifferential)
                derived.setBinding(null);
            else
                derived.getBinding().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasIsSummaryElement()) {
            if (!Base.compareDeep(derived.getIsSummaryElement(), base.getIsSummaryElement(), false)) {
                if (base.hasIsSummary())
                    throw new Error("Error in profile " + pn + " at " + derived.getPath() + ": Base isSummary = " + base.getIsSummaryElement().asStringValue() + ", derived isSummary = " + derived.getIsSummaryElement().asStringValue());
                base.setIsSummaryElement(derived.getIsSummaryElement().copy());
            } else if (trimDifferential)
                derived.setIsSummaryElement(null);
            else
                derived.getIsSummaryElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasType()) {
            if (!Base.compareDeep(derived.getType(), base.getType(), false)) {
                if (base.hasType()) {
                    for (TypeRefComponent ts : derived.getType()) {
                        boolean ok = false;
                        CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
                        for (TypeRefComponent td : base.getType()) {
                            ;
                            b.append(td.getCode());
                            if (td.hasCode() && (td.getCode().equals(ts.getCode()) || td.getCode().equals("Extension") || td.getCode().equals("Element") || td.getCode().equals("*") || ((td.getCode().equals("Resource") || (td.getCode().equals("DomainResource")) && pkp.isResource(ts.getCode())))))
                                ok = true;
                        }
                        if (!ok)
                            throw new DefinitionException("StructureDefinition " + pn + " at " + derived.getPath() + ": illegal constrained type " + ts.getCode() + " from " + b.toString());
                    }
                }
                base.getType().clear();
                for (TypeRefComponent t : derived.getType()) {
                    TypeRefComponent tt = t.copy();
                    // tt.setUserData(DERIVATION_EQUALS, true);
                    base.getType().add(tt);
                }
            } else if (trimDifferential)
                derived.getType().clear();
            else
                for (TypeRefComponent t : derived.getType()) t.setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMapping()) {
            // todo: mappings are not cumulative - one replaces another
            if (!Base.compareDeep(derived.getMapping(), base.getMapping(), false)) {
                for (ElementDefinitionMappingComponent s : derived.getMapping()) {
                    boolean found = false;
                    for (ElementDefinitionMappingComponent d : base.getMapping()) {
                        found = found || (d.getIdentity().equals(s.getIdentity()) && d.getMap().equals(s.getMap()));
                    }
                    if (!found)
                        base.getMapping().add(s);
                }
            } else if (trimDifferential)
                derived.getMapping().clear();
            else
                for (ElementDefinitionMappingComponent t : derived.getMapping()) t.setUserData(DERIVATION_EQUALS, true);
        }
        // todo: constraints are cumulative. there is no replacing
        for (ElementDefinitionConstraintComponent s : base.getConstraint()) {
            s.setUserData(IS_DERIVED, true);
            if (!s.hasSource())
                s.setSource(base.getId());
        }
        if (derived.hasConstraint()) {
            for (ElementDefinitionConstraintComponent s : derived.getConstraint()) {
                ElementDefinitionConstraintComponent inv = s.copy();
                base.getConstraint().add(inv);
            }
        }
        // now, check that we still have a bindable type; if not, delete the binding - see task 8477
        if (dest.hasBinding() && !hasBindableType(dest))
            dest.setBinding(null);
        // finally, we copy any extensions from source to dest
        for (Extension ex : base.getExtension()) {
            StructureDefinition sd = context.fetchResource(StructureDefinition.class, ex.getUrl());
            if (sd == null || sd.getSnapshot() == null || sd.getSnapshot().getElementFirstRep().getMax().equals("1"))
                ToolingExtensions.removeExtension(dest, ex.getUrl());
            dest.addExtension(ex);
        }
    }
}

Example 4 with ElementDefinitionMappingComponent

use of org.hl7.fhir.r5.model.ElementDefinition.ElementDefinitionMappingComponent in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method generateGridDescription.

private Cell generateGridDescription(HierarchicalTableGenerator gen, Row row, ElementDefinition definition, ElementDefinition fallback, boolean used, String baseURL, String url, StructureDefinition profile, String corePath, String imagePath, boolean root, ElementDefinition valueDefn) throws IOException {
    Cell c = gen.new Cell();
    row.getCells().add(c);
    if (used) {
        if (definition.hasContentReference()) {
            ElementDefinition ed = getElementByName(profile.getSnapshot().getElement(), definition.getContentReference());
            if (ed == null)
                c.getPieces().add(gen.new Piece(null, "Unknown reference to " + definition.getContentReference(), null));
            else
                c.getPieces().add(gen.new Piece("#" + ed.getPath(), "See " + ed.getPath(), null));
        }
        if (definition.getPath().endsWith("url") && definition.hasFixed()) {
            c.getPieces().add(checkForNoChange(definition.getFixed(), gen.new Piece(null, "\"" + buildJson(definition.getFixed()) + "\"", null).addStyle("color: darkgreen")));
        } else {
            if (url != null) {
                if (!c.getPieces().isEmpty())
                    c.addPiece(gen.new Piece("br"));
                String fullUrl = url.startsWith("#") ? baseURL + url : url;
                StructureDefinition ed = context.fetchResource(StructureDefinition.class, url);
                String ref = null;
                if (ed != null) {
                    String p = ed.getUserString("path");
                    if (p != null) {
                        ref = p.startsWith("http:") || igmode ? p : Utilities.pathURL(corePath, p);
                    }
                }
                c.getPieces().add(gen.new Piece(null, "URL: ", null).addStyle("font-weight:bold"));
                c.getPieces().add(gen.new Piece(ref, fullUrl, null));
            }
            if (definition.hasSlicing()) {
                if (!c.getPieces().isEmpty())
                    c.addPiece(gen.new Piece("br"));
                c.getPieces().add(gen.new Piece(null, "Slice: ", null).addStyle("font-weight:bold"));
                c.getPieces().add(gen.new Piece(null, describeSlice(definition.getSlicing()), null));
            }
            if (definition != null) {
                ElementDefinitionBindingComponent binding = null;
                if (valueDefn != null && valueDefn.hasBinding() && !valueDefn.getBinding().isEmpty())
                    binding = valueDefn.getBinding();
                else if (definition.hasBinding())
                    binding = definition.getBinding();
                if (binding != null && !binding.isEmpty()) {
                    if (!c.getPieces().isEmpty())
                        c.addPiece(gen.new Piece("br"));
                    BindingResolution br = pkp.resolveBinding(profile, binding, definition.getPath());
                    c.getPieces().add(checkForNoChange(binding, gen.new Piece(null, "Binding: ", null).addStyle("font-weight:bold")));
                    c.getPieces().add(checkForNoChange(binding, gen.new Piece(br.url == null ? null : Utilities.isAbsoluteUrl(br.url) || !pkp.prependLinks() ? br.url : corePath + br.url, br.display, null)));
                    if (binding.hasStrength()) {
                        c.getPieces().add(checkForNoChange(binding, gen.new Piece(null, " (", null)));
                        c.getPieces().add(checkForNoChange(binding, gen.new Piece(corePath + "terminologies.html#" + binding.getStrength().toCode(), binding.getStrength().toCode(), binding.getStrength().getDefinition())));
                        c.getPieces().add(gen.new Piece(null, ")", null));
                    }
                }
                for (ElementDefinitionConstraintComponent inv : definition.getConstraint()) {
                    if (!c.getPieces().isEmpty())
                        c.addPiece(gen.new Piece("br"));
                    c.getPieces().add(checkForNoChange(inv, gen.new Piece(null, inv.getKey() + ": ", null).addStyle("font-weight:bold")));
                    c.getPieces().add(checkForNoChange(inv, gen.new Piece(null, inv.getHuman(), null)));
                }
                if (definition.hasFixed()) {
                    if (!c.getPieces().isEmpty())
                        c.addPiece(gen.new Piece("br"));
                    c.getPieces().add(checkForNoChange(definition.getFixed(), gen.new Piece(null, "Fixed Value: ", null).addStyle("font-weight:bold")));
                    c.getPieces().add(checkForNoChange(definition.getFixed(), gen.new Piece(null, buildJson(definition.getFixed()), null).addStyle("color: darkgreen")));
                } else if (definition.hasPattern()) {
                    if (!c.getPieces().isEmpty())
                        c.addPiece(gen.new Piece("br"));
                    c.getPieces().add(checkForNoChange(definition.getPattern(), gen.new Piece(null, "Required Pattern: ", null).addStyle("font-weight:bold")));
                    c.getPieces().add(checkForNoChange(definition.getPattern(), gen.new Piece(null, buildJson(definition.getPattern()), null).addStyle("color: darkgreen")));
                } else if (definition.hasExample()) {
                    for (ElementDefinitionExampleComponent ex : definition.getExample()) {
                        if (!c.getPieces().isEmpty())
                            c.addPiece(gen.new Piece("br"));
                        c.getPieces().add(checkForNoChange(ex, gen.new Piece(null, "Example'" + ("".equals("General") ? "" : " " + ex.getLabel() + "'") + ": ", null).addStyle("font-weight:bold")));
                        c.getPieces().add(checkForNoChange(ex, gen.new Piece(null, buildJson(ex.getValue()), null).addStyle("color: darkgreen")));
                    }
                }
                if (definition.hasMaxLength() && definition.getMaxLength() != 0) {
                    if (!c.getPieces().isEmpty())
                        c.addPiece(gen.new Piece("br"));
                    c.getPieces().add(checkForNoChange(definition.getMaxLengthElement(), gen.new Piece(null, "Max Length: ", null).addStyle("font-weight:bold")));
                    c.getPieces().add(checkForNoChange(definition.getMaxLengthElement(), gen.new Piece(null, Integer.toString(definition.getMaxLength()), null).addStyle("color: darkgreen")));
                }
                if (profile != null) {
                    for (StructureDefinitionMappingComponent md : profile.getMapping()) {
                        if (md.hasExtension(ToolingExtensions.EXT_TABLE_NAME)) {
                            ElementDefinitionMappingComponent map = null;
                            for (ElementDefinitionMappingComponent m : definition.getMapping()) if (m.getIdentity().equals(md.getIdentity()))
                                map = m;
                            if (map != null) {
                                for (int i = 0; i < definition.getMapping().size(); i++) {
                                    c.addPiece(gen.new Piece("br"));
                                    c.getPieces().add(gen.new Piece(null, ToolingExtensions.readStringExtension(md, ToolingExtensions.EXT_TABLE_NAME) + ": " + map.getMap(), null));
                                }
                            }
                        }
                    }
                }
                if (definition.getComment() != null) {
                    if (!c.getPieces().isEmpty())
                        c.addPiece(gen.new Piece("br"));
                    c.getPieces().add(gen.new Piece(null, "Comments: ", null).addStyle("font-weight:bold"));
                    c.addPiece(gen.new Piece("br"));
                    c.addMarkdown(definition.getComment());
                // c.getPieces().add(checkForNoChange(definition.getCommentElement(), gen.new Piece(null, definition.getComment(), null)));
                }
            }
        }
    }
    return c;
}

Example 5 with ElementDefinitionMappingComponent

use of org.hl7.fhir.r5.model.ElementDefinition.ElementDefinitionMappingComponent in project org.hl7.fhir.core by hapifhir.

the class ProfileComparer method mergeMappings.

private List<ElementDefinitionMappingComponent> mergeMappings(List<ElementDefinitionMappingComponent> left, List<ElementDefinitionMappingComponent> right) {
    List<ElementDefinitionMappingComponent> result = new ArrayList<ElementDefinitionMappingComponent>();
    result.addAll(left);
    for (ElementDefinitionMappingComponent c : right) {
        boolean found = false;
        for (ElementDefinitionMappingComponent ct : left) if (Utilities.equals(c.getIdentity(), ct.getIdentity()) && Utilities.equals(c.getLanguage(), ct.getLanguage()) && Utilities.equals(c.getMap(), ct.getMap()))
            found = true;
        if (!found)
            result.add(c);
    }
    return result;
}