Examples with Enumeration org.hl7.fhir.dstu2.model.Enumeration used on opensource projects

Example 1 with Enumeration

use of org.hl7.fhir.dstu2.model.Enumeration in project kindling by HL7.

the class UMLWriter method writeEnumeration.

private static JsonObject writeEnumeration(UMLEnumeration t) {
    JsonObject json = writeEntity(t);
    json.addProperty("class", "Enumeration");
    JsonArray arr = new JsonArray();
    for (UMLEnumerationCode c : t.getCodes()) {
        arr.add(writeEntity(c));
    }
    return json;
}

Example 2 with Enumeration

use of org.hl7.fhir.dstu2.model.Enumeration in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7FinancialInsuranceTest method testBasicInsuranceCoverageFields.

// Suppress warnings about too many assertions in a test. Justification: creating a FHIR message is very costly; we need to check many asserts per creation for efficiency.
@java.lang.SuppressWarnings("squid:S5961")
@Test
void testBasicInsuranceCoverageFields() throws IOException {
    // Tests fields listed below.
    String hl7message = "MSH|^~\\&|||||20151008111200||DFT^P03^DFT_P03|MSGID000001|T|2.6|||||||||\n" + "EVN||20210407191342||||||\n" + "PID|||MR1^^^XYZ^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + "PV1||I||||||||||||||||||||||||||||||||||||||||||\n" + // FT1.7 is required transaction code (currently not used)
    "FT1||||20201231145045||CG|FAKE|||||||||||||||||||||||||||||||||||||\n" + // IN1.2.4, IN1.2.6 to second XV Coverage.identifier
    "IN1|1|Value1^^System3^Value4^^System6" + // IN1.3.8 to Organization Identifier.period.end
    "|IdValue1^^^IdSystem4^IdType5^^20201231145045^20211231145045" + // IN1.4 to Organization Name
    "|Large Blue Organization" + // IN1.5 to Organization Address (All XAD standard fields)
    "|456 Ultramarine Lane^^Faketown^CA^ZIP5" + // IN1.6.13 to Organization Contact Name .period.end
    "|LastFake^FirstFake^MiddleFake^III^Dr.^^L^^^^^20201231145045^20211231145045" + // IN1.7.18 to Organization Contact telecom .rank
    "|^WPN^^^^333^4444444^^^^^^20201231145045^20211231145045^^^^1" + // IN1.9.1 (2) to list element Coverage.class.name and value (because IN1.9.10 (2) does not exist)
    "|UA34567|NameBlue^^^^^^^^^IDBlue~NameGreen||" + // IN1.35 to Organization.identifier
    "|20201231145045|20211231145045|||||||||5|||||||||||||COMPANYPLANCODE35" + // IN1.49 has value to show that it is not used for Patient.identifier because NO relationship (IN1.17/IN2.72 empty)
    "|MEMBER36||||||||||Value46|||PatientId49.1||||\n" + // IN2.61 is purposely empty (primary to IN1.36) so IN1.36 will be used as the MB Coverage.identifier
    "IN2|||||||||||||||||||||||||IdValue25.1^^^IdSystem25.4^IdType25.5^^20201231145045^20211231145045|||||||||||||||||||||||||||||||||||||||||||" + // IN2.72 is purposely empty (backup to IN1.17) so no RelatedPerson is created.
    "|Name69.1^^^^^IdSystem69.6^UNK^^^IdValue69.10||\n";
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    List<Resource> encounters = ResourceUtils.getResourceList(e, ResourceType.Encounter);
    // From PV1
    assertThat(encounters).hasSize(1);
    List<Resource> patients = ResourceUtils.getResourceList(e, ResourceType.Patient);
    // From PID
    assertThat(patients).hasSize(1);
    Patient patient = (Patient) patients.get(0);
    String patientId = patient.getId();
    // From PID.3
    assertThat(patient.getIdentifier()).hasSize(1);
    Identifier patientIdentifier = patient.getIdentifier().get(0);
    // PID.3.1
    assertThat(patientIdentifier.getValue()).isEqualTo("MR1");
    // PID.3.4
    assertThat(patientIdentifier.getSystem()).isEqualTo("urn:id:XYZ");
    DatatypeUtils.checkCommonCodeableConceptAssertions(patientIdentifier.getType(), "MR", "Medical record number", "http://terminology.hl7.org/CodeSystem/v2-0203", // PID.3.5
    null);
    // IN1.49 not used
    List<Resource> organizations = ResourceUtils.getResourceList(e, ResourceType.Organization);
    // From IN1.3 creates Payor, IN2.25 to new PayorId Organization, IN2.69 creates new PolicyHolder Organization Name
    assertThat(organizations).hasSize(3);
    Organization org = (Organization) organizations.get(0);
    // Check Payor Organization Id's
    String payorOrgId = org.getId();
    // IN1.17.1 (no TENANT)  (Id's lowercased)
    assertThat(payorOrgId).isEqualTo("Organization/idvalue1");
    // IN1.4
    assertThat(org.getName()).isEqualTo("Large Blue Organization");
    assertThat(org.getIdentifier()).hasSize(2);
    Identifier orgIdentifier = org.getIdentifier().get(0);
    // IN1.3.1
    assertThat(orgIdentifier.getValue()).isEqualTo("IdValue1");
    // IN1.3.4
    assertThat(orgIdentifier.getSystem()).isEqualTo("urn:id:IdSystem4");
    // IN1.3.7
    assertThat(orgIdentifier.getPeriod().getStartElement().toString()).containsPattern("2020-12-31T14:50:45");
    // IN1.3.8
    assertThat(orgIdentifier.getPeriod().getEndElement().toString()).containsPattern("2021-12-31T14:50:45");
    // IN1.3.5
    DatatypeUtils.checkCommonCodeableConceptAssertions(orgIdentifier.getType(), "IdType5", null, null, null);
    Identifier orgIdentifier1 = org.getIdentifier().get(1);
    // IN1.35
    assertThat(orgIdentifier1.getValue()).isEqualTo("COMPANYPLANCODE35");
    // Check Payor Organization address. IN1.4 is a standard XAD address, which is tested exhaustively in other tests.
    assertThat(org.getAddress()).hasSize(1);
    assertThat(org.getAddress().get(0).getLine().get(0).getValueAsString()).isEqualTo(// IN1.4.1
    "456 Ultramarine Lane");
    // IN1.4.3
    assertThat(org.getAddress().get(0).getCity()).isEqualTo("Faketown");
    // IN1.4.4
    assertThat(org.getAddress().get(0).getState()).isEqualTo("CA");
    // IN1.4.5
    assertThat(org.getAddress().get(0).getPostalCode()).isEqualTo("ZIP5");
    // Check Payor Organization contact name.  IN1.6 name is standard XPN, tested exhaustively in other tests.
    HumanName contactName = org.getContact().get(0).getName();
    assertThat(org.getContact()).hasSize(1);
    // IN1.6.1
    assertThat(contactName.getFamily()).isEqualTo("LastFake");
    // IN1.6.2
    assertThat(contactName.getGiven().get(0).getValueAsString()).isEqualTo("FirstFake");
    // IN1.6.3
    assertThat(contactName.getGiven().get(1).getValueAsString()).isEqualTo("MiddleFake");
    // IN1.6.6
    assertThat(contactName.getPrefixAsSingleString()).hasToString("Dr.");
    // IN1.6.5
    assertThat(contactName.getSuffixAsSingleString()).hasToString("III");
    // from IN1.6 aggregate
    assertThat(contactName.getText()).isEqualTo("Dr. FirstFake MiddleFake LastFake III");
    // IN1.6.7
    assertThat(contactName.getUseElement().getCode()).hasToString("official");
    // IN1.6.12
    assertThat(contactName.getPeriod().getStartElement().toString()).containsPattern("2020-12-31T14:50:45");
    // IN1.6.13
    assertThat(contactName.getPeriod().getEndElement().toString()).containsPattern("2021-12-31T14:50:45");
    // Check there is no purpose. Don't need one, here.
    assertThat(org.getContact().get(0).hasPurpose()).isFalse();
    // Check Payor Organization contact telecom.  IN1.7 is standard XTN, tested exhaustively in other tests.
    assertThat(org.getContact().get(0).getTelecom()).hasSize(1);
    // telecom is type ContactPoint
    ContactPoint contactPoint = org.getContact().get(0).getTelecomFirstRep();
    // default type hardcoded.
    assertThat(contactPoint.getSystemElement().getCode()).hasToString("phone");
    // IN1.7.2 is not mapped (ignored)
    assertThat(contactPoint.hasUseElement()).isFalse();
    // IN1.7.6, IN1.7.7 via getFormattedTelecomNumberValue
    assertThat(contactPoint.getValue()).hasToString("(333) 444 4444");
    // IN1.7.13
    assertThat(contactPoint.getPeriod().getStartElement().toString()).containsPattern("2020-12-31T14:50:45");
    // IN1.7.14
    assertThat(contactPoint.getPeriod().getEndElement().toString()).containsPattern("2021-12-31T14:50:45");
    // IN1.7.18
    assertThat(contactPoint.getRank()).isEqualTo(1);
    // Check PayorId Organization from IN2.25
    org = (Organization) organizations.get(1);
    String payorOrgIdIn25 = org.getId();
    // IN1.25.1 (no TENANT) (Id's lowercased)
    assertThat(payorOrgIdIn25).isEqualTo("Organization/idvalue25.1");
    // IN2.25.1
    assertThat(org.getName()).isEqualTo("IdValue25.1");
    assertThat(org.getIdentifier()).hasSize(1);
    orgIdentifier = org.getIdentifier().get(0);
    // IN2.25.1
    assertThat(orgIdentifier.getValue()).isEqualTo("IdValue25.1");
    // IN2.25.4
    assertThat(orgIdentifier.getSystem()).isEqualTo("urn:id:IdSystem25.4");
    // IN2.25.7
    assertThat(orgIdentifier.getPeriod().getStartElement().toString()).containsPattern("2020-12-31T14:50:45");
    // IN2.25.8
    assertThat(orgIdentifier.getPeriod().getEndElement().toString()).containsPattern("2021-12-31T14:50:45");
    // IN2.25.5
    DatatypeUtils.checkCommonCodeableConceptAssertions(orgIdentifier.getType(), "IdType25.5", null, null, null);
    // Check PolicyHolder Organization Name and ID Organization from IN2.69
    org = (Organization) organizations.get(2);
    String policyHolderOrgId = org.getId();
    // IN2.69.1 (no TENANT) (Id's lowercased)
    assertThat(policyHolderOrgId).isEqualTo("Organization/idvalue69.10");
    // IN2.69.1
    assertThat(org.getName()).isEqualTo("Name69.1");
    assertThat(org.getIdentifier()).hasSize(1);
    orgIdentifier = org.getIdentifier().get(0);
    // IN2.69.10
    assertThat(orgIdentifier.getValue()).isEqualTo("IdValue69.10");
    // IN2.69.6
    assertThat(orgIdentifier.getSystem()).isEqualTo("urn:id:IdSystem69.6");
    // Becuase the code is unknown, the 0203 table lookup fails, and the coding has just the code, no system
    // IN2.69.7
    DatatypeUtils.checkCommonCodeableConceptAssertions(orgIdentifier.getType(), "UNK", null, null, null);
    List<Resource> coverages = ResourceUtils.getResourceList(e, ResourceType.Coverage);
    // From IN1 segment
    assertThat(coverages).hasSize(1);
    Coverage coverage = (Coverage) coverages.get(0);
    // Confirm Coverage Identifiers - Order matches order of identifier_X in Coverage.yml
    // XV, XV, XV, MB, SN; but not MA (IN2.8) nor MC (IN2.6)
    assertThat(coverage.getIdentifier()).hasSize(5);
    // IN1.2.1
    assertThat(coverage.getIdentifier().get(0).getValue()).isEqualTo("Value1");
    // IN1.2.3
    assertThat(coverage.getIdentifier().get(0).getSystem()).isEqualTo("urn:id:System3");
    // No use, here
    assertThat(coverage.getIdentifier().get(0).getUse()).isNull();
    DatatypeUtils.checkCommonCodeableConceptAssertions(coverage.getIdentifier().get(0).getType(), "XV", "Health Plan Identifier", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // IN1.2.4
    assertThat(coverage.getIdentifier().get(1).getValue()).isEqualTo("Value4");
    // IN1.2.6
    assertThat(coverage.getIdentifier().get(1).getSystem()).isEqualTo("urn:id:System6");
    // No use, here
    assertThat(coverage.getIdentifier().get(1).getUse()).isNull();
    DatatypeUtils.checkCommonCodeableConceptAssertions(coverage.getIdentifier().get(1).getType(), "XV", "Health Plan Identifier", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // IN1.46
    assertThat(coverage.getIdentifier().get(2).getValue()).isEqualTo("Value46");
    // No system, here
    assertThat(coverage.getIdentifier().get(2).getSystem()).isNull();
    // Use is enumeration "old"
    assertThat(coverage.getIdentifier().get(2).getUseElement().getCode()).hasToString("old");
    DatatypeUtils.checkCommonCodeableConceptAssertions(coverage.getIdentifier().get(2).getType(), "XV", "Health Plan Identifier", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // IN1.36
    assertThat(coverage.getIdentifier().get(3).getValue()).isEqualTo("MEMBER36");
    // No system, here
    assertThat(coverage.getIdentifier().get(3).getSystem()).isNull();
    // No use, here
    assertThat(coverage.getIdentifier().get(3).getUse()).isNull();
    DatatypeUtils.checkCommonCodeableConceptAssertions(coverage.getIdentifier().get(3).getType(), "MB", "Member Number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // IN1.36
    assertThat(coverage.getIdentifier().get(4).getValue()).isEqualTo("MEMBER36");
    // No system, here
    assertThat(coverage.getIdentifier().get(4).getSystem()).isNull();
    // No use, here
    assertThat(coverage.getIdentifier().get(4).getUse()).isNull();
    DatatypeUtils.checkCommonCodeableConceptAssertions(coverage.getIdentifier().get(4).getType(), "SN", "Subscriber Number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // Confirm SubscriberId
    // IN1.36
    assertThat(coverage.getSubscriberId()).isEqualTo("MEMBER36");
    // Confirm coverage.Order
    // IN1.22 takes priority over IN1.1
    assertThat(coverage.getOrder()).isEqualTo(5);
    // Confirm Coverage Beneficiary references to Patient, and Payor references correct Organizations
    assertThat(coverage.getBeneficiary().getReference()).isEqualTo(patientId);
    // One for each payorOrganization
    assertThat(coverage.getPayor()).hasSize(2);
    assertThat(coverage.getPayor().get(0).getReference()).isEqualTo(payorOrgId);
    assertThat(coverage.getPayor().get(1).getReference()).isEqualTo(payorOrgIdIn25);
    // Confirm policyHolder references correct organization
    assertThat(coverage.getPolicyHolder().getReference()).isEqualTo(policyHolderOrgId);
    // Only one Coverage Class expected.  (getClass_ is correct name for method)
    assertThat(coverage.getClass_()).hasSize(3);
    // IN1.8  Only has value
    checkCoverageClassExistsWithCorrectValueAndName(coverage.getClass_(), "UA34567", null);
    // IN1.9 (1)
    checkCoverageClassExistsWithCorrectValueAndName(coverage.getClass_(), "IDBlue", "NameBlue");
    // IN1.9 (2) Name is also used for value
    checkCoverageClassExistsWithCorrectValueAndName(coverage.getClass_(), "NameGreen", "NameGreen");
    // Confirm Coverage period
    // IN1.12
    assertThat(coverage.getPeriod().getStartElement().toString()).containsPattern("2020-12-31T14:50:45");
    // IN1.13
    assertThat(coverage.getPeriod().getEndElement().toString()).containsPattern("2021-12-31T14:50:45");
    // Expect no RelatedPerson because IN1.17 was empty
    List<Resource> relatedPersons = ResourceUtils.getResourceList(e, ResourceType.RelatedPerson);
    // IN1.17 empty
    assertThat(relatedPersons).isEmpty();
    // Confirm there are no unaccounted for resources
    // Expected: Coverage, Organization (3x), Patient, Encounter
    assertThat(e).hasSize(6);
}

Example 3 with Enumeration

use of org.hl7.fhir.dstu2.model.Enumeration in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7FinancialInsuranceTest method testInsuranceCoverageByRelatedFields.

// Suppress warnings about too many assertions in a test.  Justification: creating a FHIR message is very costly; we need to check many asserts per creation for efficiency.
@java.lang.SuppressWarnings("squid:S5961")
@ParameterizedTest
// The breadth of this test is sufficent for multiple message type coverage, so other tests are not parameterized.
@ValueSource(strings = { "DFT^P03^DFT_P03", "VXU^V04^VXU_V04", "ADT^A01^ADT_A01", "ADT^A03^ADT_A03", // ADT^A04 uses structure ADT_A01
"ADT^A04^ADT_A01", // ADT^A08 uses structure ADT_A01
"ADT^A08^ADT_A01", // ADT^A28 uses structure ADT_A05
"ADT^A28^ADT_A05", // ADT^A31 uses structure ADT_A05
"ADT^A31^ADT_A05" })
// Also test IN2.2 Social Security number
void testInsuranceCoverageByRelatedFields(String messageType) throws IOException {
    String hl7message = "MSH|^~\\&|||||20151008111200||" + messageType + "|MSGID000001|T|2.6|||||||||\n" + "EVN||20210407191342||||||\n" + "PID|||MR1^^^XYZ^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + "PV1||I||||||||||||||||||||||||||||||||||||||||||\n" + // FT1.7 is required transaction code (currently not used)
    "FT1||||20201231145045||CG|FAKE|||||||||||||||||||||||||||||||||||||\n" + // IN1.2.4, IN1.2.6 to second XV Coverage.identifier
    "IN1|1|Value1^^System3^Value4^^System6" + // IN1.5 to 15 NOT REFERENCED (See test testBasicInsuranceCoverageFields)
    "|IdValue1^^^IdSystem4^^^^|Large Blue Organization|||||||||||" + // IN1.23 through IN1.35 NOT REFERENCED
    "|DoeFake^Judy^^^Rev.|PAR|19780429|19 Rose St^^Faketown^CA^ZIP5||||||||||||||||" + // IN1.50 through IN1.53 NOT REFERENCED
    "|MEMBER36|||||||F|||Value46|||J494949^^^Large HMO^XX||||\n" + // IN2.9 through IN2.60 not used
    "IN2||777-88-9999||||MEDICARE06||MEDICAID08|| |||||||||| ||||||||||| |||||||||| |||||||||| ||||||||||" + // IN2.63.18 to Organization Contact telecom .rank
    "MEMBER61||^^^^^555^7677777^^^^^^20201231145045^20211231145045^^^^1|";
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    List<Resource> encounters = ResourceUtils.getResourceList(e, ResourceType.Encounter);
    // From PV1
    assertThat(encounters).hasSize(1);
    List<Resource> patients = ResourceUtils.getResourceList(e, ResourceType.Patient);
    // From PID
    assertThat(patients).hasSize(1);
    Patient patient = (Patient) patients.get(0);
    String patientId = patient.getId();
    // From PID.3, IN1.49, IN2.6, IN2.8
    assertThat(patient.getIdentifier()).hasSize(4);
    Identifier patientIdentifier = patient.getIdentifier().get(0);
    // PID.3.1
    assertThat(patientIdentifier.getValue()).isEqualTo("MR1");
    // PID.3.4
    assertThat(patientIdentifier.getSystem()).isEqualTo("urn:id:XYZ");
    DatatypeUtils.checkCommonCodeableConceptAssertions(patientIdentifier.getType(), "MR", "Medical record number", "http://terminology.hl7.org/CodeSystem/v2-0203", // PID.3.5
    null);
    patientIdentifier = patient.getIdentifier().get(1);
    // IN1.49.1
    assertThat(patientIdentifier.getValue()).isEqualTo("J494949");
    // IN1.49.4
    assertThat(patientIdentifier.getSystem()).isEqualTo("urn:id:Large_HMO");
    DatatypeUtils.checkCommonCodeableConceptAssertions(patientIdentifier.getType(), "XX", null, "http://terminology.hl7.org/CodeSystem/v2-0203", // IN1.49.5
    null);
    patientIdentifier = patient.getIdentifier().get(2);
    // IN2.8
    assertThat(patientIdentifier.getValue()).isEqualTo("MEDICAID08");
    // No system for IN2.8
    assertThat(patientIdentifier.hasSystem()).isFalse();
    DatatypeUtils.checkCommonCodeableConceptAssertions(patientIdentifier.getType(), "MA", "Patient Medicaid number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    patientIdentifier = patient.getIdentifier().get(3);
    // IN2.6
    assertThat(patientIdentifier.getValue()).isEqualTo("MEDICARE06");
    // No system for IN2.6
    assertThat(patientIdentifier.hasSystem()).isFalse();
    DatatypeUtils.checkCommonCodeableConceptAssertions(patientIdentifier.getType(), "MC", "Patient's Medicare number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    List<Resource> organizations = ResourceUtils.getResourceList(e, ResourceType.Organization);
    // From Payor created by IN1
    assertThat(organizations).hasSize(1);
    List<Resource> coverages = ResourceUtils.getResourceList(e, ResourceType.Coverage);
    // From IN1 segment
    assertThat(coverages).hasSize(1);
    Coverage coverage = (Coverage) coverages.get(0);
    // Confirm Coverage Identifiers - Order matches order of identifier_X in Coverage.yml
    // XV, XV, XV, MB, MA, MC, SN
    assertThat(coverage.getIdentifier()).hasSize(7);
    // IN1.2.1
    assertThat(coverage.getIdentifier().get(0).getValue()).isEqualTo("Value1");
    // IN1.2.3
    assertThat(coverage.getIdentifier().get(0).getSystem()).isEqualTo("urn:id:System3");
    // No use, here
    assertThat(coverage.getIdentifier().get(0).getUse()).isNull();
    DatatypeUtils.checkCommonCodeableConceptAssertions(coverage.getIdentifier().get(0).getType(), "XV", "Health Plan Identifier", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // IN1.2.4
    assertThat(coverage.getIdentifier().get(1).getValue()).isEqualTo("Value4");
    // IN1.2.6
    assertThat(coverage.getIdentifier().get(1).getSystem()).isEqualTo("urn:id:System6");
    // No use, here
    assertThat(coverage.getIdentifier().get(1).getUse()).isNull();
    DatatypeUtils.checkCommonCodeableConceptAssertions(coverage.getIdentifier().get(1).getType(), "XV", "Health Plan Identifier", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // IN1.46
    assertThat(coverage.getIdentifier().get(2).getValue()).isEqualTo("Value46");
    // No system, here
    assertThat(coverage.getIdentifier().get(2).getSystem()).isNull();
    // Use is enumeration "old"
    assertThat(coverage.getIdentifier().get(2).getUseElement().getCode()).hasToString("old");
    DatatypeUtils.checkCommonCodeableConceptAssertions(coverage.getIdentifier().get(2).getType(), "XV", "Health Plan Identifier", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // IN2.61 takes priority over IN1.36
    assertThat(coverage.getIdentifier().get(3).getValue()).isEqualTo("MEMBER61");
    // No system, here
    assertThat(coverage.getIdentifier().get(3).getSystem()).isNull();
    // No use, here
    assertThat(coverage.getIdentifier().get(3).getUse()).isNull();
    DatatypeUtils.checkCommonCodeableConceptAssertions(coverage.getIdentifier().get(3).getType(), "MB", "Member Number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // IN2.8
    assertThat(coverage.getIdentifier().get(4).getValue()).isEqualTo("MEDICAID08");
    // No system, here
    assertThat(coverage.getIdentifier().get(4).getSystem()).isNull();
    // No use, here
    assertThat(coverage.getIdentifier().get(4).getUse()).isNull();
    DatatypeUtils.checkCommonCodeableConceptAssertions(coverage.getIdentifier().get(4).getType(), "MA", "Patient Medicaid number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // IN2.6
    assertThat(coverage.getIdentifier().get(5).getValue()).isEqualTo("MEDICARE06");
    // No system, here
    assertThat(coverage.getIdentifier().get(5).getSystem()).isNull();
    // No use, here
    assertThat(coverage.getIdentifier().get(5).getUse()).isNull();
    DatatypeUtils.checkCommonCodeableConceptAssertions(coverage.getIdentifier().get(5).getType(), "MC", "Patient's Medicare number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // IN1.36
    assertThat(coverage.getIdentifier().get(6).getValue()).isEqualTo("MEMBER36");
    // No system, here
    assertThat(coverage.getIdentifier().get(6).getSystem()).isNull();
    // No use, here
    assertThat(coverage.getIdentifier().get(6).getUse()).isNull();
    DatatypeUtils.checkCommonCodeableConceptAssertions(coverage.getIdentifier().get(6).getType(), "SN", "Subscriber Number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // Confirm Coverage Beneficiary references to Patient, and Payor references to Organization
    assertThat(coverage.getBeneficiary().getReference()).isEqualTo(patientId);
    assertThat(coverage.getPayorFirstRep().getReference()).isEqualTo(organizations.get(0).getId());
    // Expect one RelatedPerson
    List<Resource> relatedPersons = ResourceUtils.getResourceList(e, ResourceType.RelatedPerson);
    // From IN1.16 through IN1.19; IN1.43; INI.49
    assertThat(relatedPersons).hasSize(1);
    RelatedPerson related = (RelatedPerson) relatedPersons.get(0);
    // Check RelatedPerson identifiers
    assertThat(related.getIdentifier()).hasSize(2);
    // IN1.49.1
    assertThat(related.getIdentifier().get(0).getValue()).isEqualTo("J494949");
    // IN1.49.4
    assertThat(related.getIdentifier().get(0).getSystem()).isEqualTo("urn:id:Large_HMO");
    // IN1.49.5
    DatatypeUtils.checkCommonCodeableConceptAssertions(// IN1.49.5
    related.getIdentifier().get(0).getType(), // IN1.49.5
    "XX", // Display value looked up from code 'XX'
    "Organization identifier", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // IN2.2
    assertThat(related.getIdentifier().get(1).getValue()).isEqualTo("777-88-9999");
    // No system to assign
    assertThat(related.getIdentifier().get(1).hasSystem()).isFalse();
    DatatypeUtils.checkCommonCodeableConceptAssertions(related.getIdentifier().get(1).getType(), "SS", "Social Security number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // Check RelatedPerson name. IN1.16 name is standard XPN, tested exhaustively in other tests.
    assertThat(related.getName()).hasSize(1);
    HumanName relatedName = related.getName().get(0);
    // IN1.16.1
    assertThat(relatedName.getFamily()).isEqualTo("DoeFake");
    // IN1.16.2
    assertThat(relatedName.getGiven().get(0).getValueAsString()).isEqualTo("Judy");
    // IN1.16.6
    assertThat(relatedName.getPrefixAsSingleString()).hasToString("Rev.");
    // from IN1.16 aggregate
    assertThat(relatedName.getText()).isEqualTo("Rev. Judy DoeFake");
    // Check RelatedPerson birth and gender
    // IN1.18
    assertThat(related.getBirthDateElement().toString()).containsPattern("1978-04-29");
    Enumerations.AdministrativeGender gen = related.getGender();
    // IN1.43
    assertThat(gen).isNotNull().isEqualTo(Enumerations.AdministrativeGender.FEMALE);
    // Check the RelatedPerson address. IN1.19 is a standard XAD address, which is tested exhaustively in other tests.
    assertThat(related.getAddress()).hasSize(1);
    assertThat(related.getAddress().get(0).getLine().get(0).getValueAsString()).isEqualTo(// IN1.19.1
    "19 Rose St");
    // IN1.19.3
    assertThat(related.getAddress().get(0).getCity()).isEqualTo("Faketown");
    // IN1.19.4
    assertThat(related.getAddress().get(0).getState()).isEqualTo("CA");
    // IN1.19.5
    assertThat(related.getAddress().get(0).getPostalCode()).isEqualTo("ZIP5");
    // Check RelatedPerson telecom.  IN2.63 is standard XTN, tested exhaustively in other tests.
    // telecom is type ContactPoint
    ContactPoint contactPoint = related.getTelecomFirstRep();
    // default type hardcoded.
    assertThat(contactPoint.getSystemElement().getCode()).hasToString("phone");
    // Hard-coded to home.  IN2.63.2 is not mapped (ignored).
    assertThat(contactPoint.getUseElement().getCode()).isEqualTo("home");
    // Hard-coded to home.  IN2.63.2 is not mapped (ignored).
    ;
    // IN2.63.6, IN2.63.7 via getFormattedTelecomNumberValue
    assertThat(contactPoint.getValue()).hasToString("(555) 767 7777");
    // IN2.63.13
    assertThat(contactPoint.getPeriod().getStartElement().toString()).containsPattern("2020-12-31T14:50:45");
    // IN2.63.14
    assertThat(contactPoint.getPeriod().getEndElement().toString()).containsPattern("2021-12-31T14:50:45");
    // IN2.63.18
    assertThat(contactPoint.getRank()).isEqualTo(1);
    // Check coverage relationship
    DatatypeUtils.checkCommonCodeableConceptAssertions(coverage.getRelationship(), "child", "Child", "http://terminology.hl7.org/CodeSystem/subscriber-relationship", // IN1.17
    null);
    // Check relatedPerson relationship
    assertThat(related.getRelationship()).hasSize(1);
    DatatypeUtils.checkCommonCodeableConceptAssertions(related.getRelationship().get(0), "PRN", "parent", "http://terminology.hl7.org/CodeSystem/v3-RoleCode", // IN1.17
    null);
    // Confirm the Coverage (subscriber) references the RelatedPerson
    assertThat(coverage.getSubscriber().getReference()).isEqualTo(related.getId());
    // Confirm the RelatedPerson references the Patient
    assertThat(related.getPatient().getReference()).isEqualTo(patientId);
    // Confirm coverage.Order
    // IN1.1 backup for missing IN1.22
    assertThat(coverage.getOrder()).isEqualTo(1);
    // Confirm there are no unaccounted for resources
    // Expected: Coverage, Organization, Patient, Encounter, RelatedPerson
    assertThat(e).hasSize(5);
}

Example 4 with Enumeration

use of org.hl7.fhir.dstu2.model.Enumeration in project cqf-ruler by DBCG.

the class ProcessMessageProvider method processMessageBundle.

@Operation(name = "$process-message-bundle", idempotent = false)
public Bundle processMessageBundle(HttpServletRequest theServletRequest, RequestDetails theRequestDetails, @OperationParam(name = "content", min = 1, max = 1) @Description(formalDefinition = "The message to process (or, if using asynchronous messaging, it may be a response message to accept)") Bundle theMessageToProcess) {
    logger.info("Validating the Bundle");
    Bundle bundle = theMessageToProcess;
    Boolean errorExists = false;
    OperationOutcome outcome = validateBundle(errorExists, bundle);
    if (!errorExists) {
        IVersionSpecificBundleFactory bundleFactory = this.getFhirContext().newBundleFactory();
        bundle.setId(getUUID());
        bundleFactory.initializeWithBundleResource(bundle);
        Bundle dafBundle = (Bundle) bundleFactory.getResourceBundle();
        dafBundle.setTimestamp(new Date());
        this.getDaoRegistry().getResourceDao(Bundle.class).create(dafBundle);
        MessageHeader messageHeader = null;
        String patientId = null;
        String commId = null;
        List<MessageHeader> headers = BundleUtil.toListOfResourcesOfType(this.getFhirContext(), bundle, MessageHeader.class);
        for (MessageHeader mh : headers) {
            messageHeader = mh;
            messageHeader.setId(getUUID());
            Meta meta = messageHeader.getMeta();
            meta.setLastUpdated(new Date());
            messageHeader.setMeta(meta);
        }
        List<IBaseResource> resources = new ArrayList<>();
        List<Patient> patients = BundleUtil.toListOfResourcesOfType(this.getFhirContext(), bundle, Patient.class);
        for (Patient p : patients) {
            patientId = p.getId();
            p.setId(p.getIdElement().toVersionless());
            resources.add(p);
        }
        List<Bundle> bundles = BundleUtil.toListOfResourcesOfType(this.getFhirContext(), bundle, Bundle.class);
        for (Bundle b : bundles) {
            patientId = this.processBundle(b, theRequestDetails);
            b.setId(b.getIdElement().toVersionless());
            resources.add(b);
        }
        for (BundleEntryComponent e : bundle.getEntry()) {
            Resource r = e.getResource();
            if (r == null) {
                continue;
            }
            if (r.fhirType().equals("Bundle") || r.fhirType().equals("MessageHeader") || r.fhirType().equals("Patient")) {
                continue;
            }
            r.setId(r.getIdElement().toVersionless());
            resources.add(r);
        }
        if (patientId != null) {
            commId = constructAndSaveCommunication(patientId);
        }
        if (messageHeader == null) {
            messageHeader = constructMessageHeaderResource();
            BundleEntryComponent entryComp = new BundleEntryComponent();
            entryComp.setResource(messageHeader);
            dafBundle.addEntry(entryComp);
        }
        if (commId != null) {
            List<Reference> referenceList = new ArrayList<>();
            Reference commRef = new Reference();
            commRef.setReference("Communication/" + commId);
            referenceList.add(commRef);
            messageHeader.setFocus(referenceList);
        }
        IVersionSpecificBundleFactory newBundleFactory = this.getFhirContext().newBundleFactory();
        newBundleFactory.addResourcesToBundle(resources, BundleTypeEnum.TRANSACTION, theRequestDetails.getFhirServerBase(), null, null);
        Bundle transactionBundle = (Bundle) newBundleFactory.getResourceBundle();
        for (BundleEntryComponent entry : transactionBundle.getEntry()) {
            UriType uri = new UriType(theRequestDetails.getFhirServerBase() + "/" + entry.getResource().fhirType() + "/" + entry.getResource().getIdElement().getIdPart());
            Enumeration<HTTPVerb> method = new Enumeration<>(new HTTPVerbEnumFactory());
            method.setValue(HTTPVerb.PUT);
            entry.setRequest(new BundleEntryRequestComponent(method, uri));
        }
        @SuppressWarnings("unchecked") IFhirSystemDao<Bundle, Meta> fhirSystemDao = this.getDaoRegistry().getSystemDao();
        fhirSystemDao.transaction(theRequestDetails, transactionBundle);
        return dafBundle;
    } else {
        BundleEntryComponent entryComp = new BundleEntryComponent();
        entryComp.setResource(outcome);
        bundle.addEntry(entryComp);
        return bundle;
    }
}

Example 5 with Enumeration

use of org.hl7.fhir.dstu2.model.Enumeration in project quality-measure-and-cohort-service by Alvearie.

the class CohortCLITest method testMainMultipleResultTypes.

@Test
public void testMainMultipleResultTypes() throws Exception {
    FhirServerConfig fhirConfig = getFhirServerConfig();
    mockFhirResourceRetrieval("/metadata?_format=json", getCapabilityStatement());
    Patient patient = getPatient("123", Enumerations.AdministrativeGender.FEMALE, "1978-05-06");
    patient.setMaritalStatus(new CodeableConcept(new Coding("http://hl7.org/fhir/ValueSet/marital-status", "M", "Married")));
    mockFhirResourceRetrieval(patient);
    Condition condition = new Condition();
    condition.setSubject(new Reference(patient.getId()));
    condition.setCode(new CodeableConcept(new Coding("http://snomed.com/snomed/2020", "1234", "Dummy")));
    mockFhirResourceRetrieval("/Condition?code%3Ain=http%3A%2F%2Fsome.io%2Fcondition&subject=Patient%2F" + patient.getId() + "&_count=500&_format=json", condition);
    File tmpFile = new File("target/fhir-stub.json");
    ObjectMapper om = new ObjectMapper();
    try (Writer w = new FileWriter(tmpFile)) {
        w.write(om.writeValueAsString(fhirConfig));
    }
    try {
        PrintStream originalOut = System.out;
        ByteArrayOutputStream baos = new ByteArrayOutputStream();
        try (PrintStream captureOut = new PrintStream(baos)) {
            System.setOut(captureOut);
            CohortCLI.main(new String[] { "-d", tmpFile.getAbsolutePath(), "-f", "src/test/resources/cql/result-types", "-l", "test_result_types", "-c", patient.getId(), "--enable-terminology-optimization", "--search-page-size", "500" });
        } finally {
            System.setOut(originalOut);
        }
        String output = new String(baos.toByteArray());
        assertTrue(output.contains("Collection: 1"));
        assertTrue(output.contains("Patient/123"));
        assertTrue(output.contains("false"));
        assertTrue(output.contains("DateType[1978-05-06]"));
        assertTrue(output.contains("Enumeration[female]"));
        String[] lines = output.split("\r?\n");
        assertEquals(output, 9, lines.length);
        System.out.println(output);
    } finally {
        tmpFile.delete();
    }
}