Examples with OperationOutcome org.hl7.fhir.dstu2.model.OperationOutcome used on opensource projects

Example 6 with OperationOutcome

use of org.hl7.fhir.dstu2.model.OperationOutcome in project cqf-ruler by DBCG.

the class CodeSystemUpdateProvider method updateCodeSystems.

/**
 * Update existing {@link CodeSystem CodeSystems} with the codes in all
 * {@link ValueSet ValueSet} resources.
 * System level CodeSystem update operation
 *
 * @return FHIR {@link OperationOutcome OperationOutcome} detailing the success
 *         or failure of the
 *         operation
 */
@Description(shortDefinition = "$updateCodeSystems", value = "Update existing CodeSystems with the codes in all ValueSet resources. System level CodeSystem update operation", example = "$updateCodeSystems")
@Operation(name = "$updateCodeSystems", idempotent = true)
public OperationOutcome updateCodeSystems() {
    IBundleProvider valuesets = this.myValueSetDaoDSTU3.search(SearchParameterMap.newSynchronous());
    List<ValueSet> valueSets = valuesets.getAllResources().stream().map(x -> (ValueSet) x).collect(Collectors.toList());
    OperationOutcome outcome = this.performCodeSystemUpdate(valueSets);
    OperationOutcome response = new OperationOutcome();
    if (outcome.hasIssue()) {
        for (OperationOutcome.OperationOutcomeIssueComponent issue : outcome.getIssue()) {
            response.addIssue(issue);
        }
    }
    return response;
}

Example 7 with OperationOutcome

use of org.hl7.fhir.dstu2.model.OperationOutcome in project cqf-ruler by DBCG.

the class CacheValueSetsProvider method cacheValuesets.

/**
 * Using basic authentication this {@link Operation Operation} will update
 * any {@link ValueSet Valueset} listed given the {@link Endpoint Endpoint}
 * provided.
 * Any Valuesets that require expansion will be expanded.
 *
 * @param details    the {@link RequestDetails RequestDetails}
 * @param endpointId the {@link Endpoint Endpoint} id
 * @param valuesets  the {@link StringAndListParam list} of {@link ValueSet
 *                   Valueset} ids
 * @param userName   the userName
 * @param password   the password
 * @return the {@link OperationOutcome OperationOutcome} or the resulting
 *         {@link Bundle Bundle}
 */
@Description(shortDefinition = "$cache-valuesets", value = "Using basic authentication this Operation will update any Valueset listed given the Endpoint provided. Any Valuesets that require expansion will be expanded.", example = "Endpoint/example-id/$cache-valuesets?valuesets=valuesetId1&valuesets=valuesetId2&user=user&password=password")
@Operation(name = "cache-valuesets", idempotent = true, type = Endpoint.class)
public Resource cacheValuesets(RequestDetails details, @IdParam IdType endpointId, @OperationParam(name = "valuesets") StringAndListParam valuesets, @OperationParam(name = "user") String userName, @OperationParam(name = "pass") String password) {
    Endpoint endpoint = null;
    try {
        endpoint = this.endpointDao.read(endpointId);
        if (endpoint == null) {
            return createErrorOutcome("Could not find Endpoint/" + endpointId);
        }
    } catch (Exception e) {
        return createErrorOutcome("Could not find Endpoint/" + endpointId + "\n" + e);
    }
    IGenericClient client = Clients.forEndpoint(ourCtx, endpoint);
    if (userName != null || password != null) {
        if (userName == null) {
            return createErrorOutcome("Password was provided, but not a user name.");
        } else if (password == null) {
            return createErrorOutcome("User name was provided, but not a password.");
        }
        BasicAuthInterceptor basicAuth = new BasicAuthInterceptor(userName, password);
        client.registerInterceptor(basicAuth);
    // TODO - more advanced security like bearer tokens, etc...
    }
    try {
        Bundle bundleToPost = new Bundle();
        for (StringOrListParam params : valuesets.getValuesAsQueryTokens()) {
            for (StringParam valuesetId : params.getValuesAsQueryTokens()) {
                bundleToPost.addEntry().setRequest(new Bundle.BundleEntryRequestComponent().setMethod(Bundle.HTTPVerb.PUT).setUrl("ValueSet/" + valuesetId.getValue())).setResource(resolveValueSet(client, valuesetId.getValue()));
            }
        }
        return (Resource) systemDao.transaction(details, bundleToPost);
    } catch (Exception e) {
        return createErrorOutcome(e.getMessage());
    }
}

Example 8 with OperationOutcome

use of org.hl7.fhir.dstu2.model.OperationOutcome in project cqf-ruler by DBCG.

the class CacheValueSetsProviderIT method validateOutcome.

private void validateOutcome(Resource outcomeResource, String detailMessage) {
    assertTrue(outcomeResource instanceof OperationOutcome);
    OperationOutcome outcome = (OperationOutcome) outcomeResource;
    for (OperationOutcomeIssueComponent issue : outcome.getIssue()) {
        assertEquals(OperationOutcome.IssueSeverity.ERROR, issue.getSeverity());
        assertTrue(issue.getDetails().getCodingFirstRep().getDisplay().startsWith(detailMessage));
    }
}

Example 9 with OperationOutcome

use of org.hl7.fhir.dstu2.model.OperationOutcome in project cqf-ruler by DBCG.

the class CodeSystemProviderIT method testDSTU3UpdateCodeSystems.

@Test
@Order(5)
public void testDSTU3UpdateCodeSystems() throws IOException {
    log.info("Beginning Test DSTU3 Update Code Systems");
    assertEquals(0, performCodeSystemSearchByUrl(cptUrl).size());
    File[] valuesets = new File(CodeSystemProviderIT.class.getResource("valueset").getPath()).listFiles();
    for (File file : valuesets) {
        if (file.isFile() && FilenameUtils.getExtension(file.getPath()).equals("json")) {
            BufferedReader reader = new BufferedReader(new InputStreamReader(new FileInputStream(file)));
            String resourceString = reader.lines().collect(Collectors.joining(System.lineSeparator()));
            reader.close();
            loadResource("json", resourceString);
        } else if (file.isFile() && FilenameUtils.getExtension(file.getPath()).equals("xml")) {
            BufferedReader reader = new BufferedReader(new InputStreamReader(new FileInputStream(file)));
            String resourceString = reader.lines().collect(Collectors.joining(System.lineSeparator()));
            reader.close();
            loadResource("xml", resourceString);
        }
    }
    OperationOutcome outcome = codeSystemUpdateProvider.updateCodeSystems();
    for (OperationOutcomeIssueComponent issue : outcome.getIssue()) {
        assertEquals(OperationOutcome.IssueSeverity.INFORMATION, issue.getSeverity());
        assertTrue(issue.getDetails().getText().startsWith("Successfully updated the following CodeSystems: "));
        assertTrue(issue.getDetails().getText().contains("cpt"));
        assertTrue(issue.getDetails().getText().contains("icd-10"));
        assertTrue(issue.getDetails().getText().contains("sct"));
        assertTrue(issue.getDetails().getText().contains("rxnorm"));
    }
    assertEquals(1, performCodeSystemSearchByUrl(icd10).size());
    assertEquals(1, performCodeSystemSearchByUrl(rxNormUrl).size());
    assertEquals(1, performCodeSystemSearchByUrl(snomedSctUrl).size());
    assertEquals(1, performCodeSystemSearchByUrl(cptUrl).size());
    log.info("Finished Test DSTU3 Update Code Systems");
}

Example 10 with OperationOutcome

use of org.hl7.fhir.dstu2.model.OperationOutcome in project cqf-ruler by DBCG.

the class CacheValueSetsProviderIT method validateOutcome.

private void validateOutcome(Resource outcomeResource, String detailMessage) {
    assertTrue(outcomeResource instanceof OperationOutcome);
    OperationOutcome outcome = (OperationOutcome) outcomeResource;
    for (OperationOutcomeIssueComponent issue : outcome.getIssue()) {
        assertEquals(OperationOutcome.IssueSeverity.ERROR, issue.getSeverity());
        assertTrue(issue.getDetails().getCodingFirstRep().getDisplay().startsWith(detailMessage));
    }
}