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Example 21 with ValueSet

use of org.hl7.fhir.dstu2.model.ValueSet in project kindling by HL7.

the class PageProcessor method genNSList.

private String genNSList() throws Exception {
    StringBuilder b = new StringBuilder();
    b.append("<p>Redirects on this page:</p>\r\n");
    b.append("<ul>\r\n");
    b.append(" <li>Resources</li>\r\n");
    b.append(" <li>Data Types</li>\r\n");
    b.append(" <li>Code Systems</li>\r\n");
    b.append(" <li>Value Sets</li>\r\n");
    b.append(" <li>Extensions</li>\r\n");
    b.append(" <li>Profiles</li>\r\n");
    b.append(" <li>Naming Systems</li>\r\n");
    b.append(" <li>Examples</li>\r\n");
    b.append(" <li>Compartments</li>\r\n");
    b.append(" <li>Data Elements</li>\r\n");
    b.append(" <li>Search Parameters</li>\r\n");
    b.append(" <li>Implementation Guides</li>\r\n");
    b.append(" <li>SIDs</li>\r\n");
    b.append(" <li>Others From publish.ini</li>\r\n");
    b.append("</ul>\r\n");
    b.append("<table class=\"grid\">\r\n");
    b.append(" <tr><td><b>URL</b></td><td><b>Thing</b></td><td><b>Page</b></td></tr>");
    for (String n : definitions.sortedResourceNames()) definitions.addNs("http://hl7.org/fhir/" + n, n + " Resource", n.toLowerCase() + ".html");
    for (String n : definitions.getTypes().keySet()) definitions.addNs("http://hl7.org/fhir/" + n, "Data Type " + n, definitions.getSrcFile(n) + ".html#" + n);
    for (String n : definitions.getPrimitives().keySet()) definitions.addNs("http://hl7.org/fhir/" + n, "Primitive Data Type " + n, definitions.getSrcFile(n) + ".html#" + n);
    for (String n : definitions.getConstraints().keySet()) definitions.addNs("http://hl7.org/fhir/" + n, "Data Type Profile " + n, definitions.getSrcFile(n) + ".html#" + n);
    for (String n : definitions.getInfrastructure().keySet()) definitions.addNs("http://hl7.org/fhir/" + n, "Data Type " + n, definitions.getSrcFile(n) + ".html#" + n);
    for (CodeSystem cs : getCodeSystems().getList()) if (cs != null && cs.getUrl().startsWith("http://hl7.org/fhir"))
        definitions.addNs(cs.getUrl(), "CodeSystem " + cs.getName(), cs.getUserString("path"));
    for (ValueSet vs : getValueSets().getList()) if (vs.getUrl().startsWith("http://hl7.org/fhir"))
        definitions.addNs(vs.getUrl(), "ValueSet " + vs.present(), vs.getUserString("path"));
    for (ConceptMap cm : getConceptMaps().getList()) if (cm.getUrl().startsWith("http://hl7.org/fhir"))
        definitions.addNs(cm.getUrl(), "Concept Map" + cm.getName(), cm.getUserString("path"));
    for (StructureDefinition sd : profiles.getList()) if (sd.getUrl().startsWith("http://hl7.org/fhir") && !definitions.getResourceTemplates().containsKey(sd.getName()))
        definitions.addNs(sd.getUrl(), "Profile " + sd.getName(), sd.getUserString("path"));
    for (StructureDefinition sd : workerContext.getExtensionDefinitions()) if (sd.getUrl().startsWith("http://hl7.org/fhir"))
        definitions.addNs(sd.getUrl(), "Profile " + sd.getName(), sd.getUserString("path"));
    for (NamingSystem nss : definitions.getNamingSystems()) {
        String url = null;
        definitions.addNs("http://hl7.org/fhir/NamingSystem/" + nss.getId(), "System " + nss.getName(), nss.getUserString("path"));
        for (NamingSystemUniqueIdComponent t : nss.getUniqueId()) {
            if (t.getType() == NamingSystemIdentifierType.URI)
                url = t.getValue();
        }
        if (url != null && url.startsWith("http://hl7.org/fhir"))
            definitions.addNs(url, "System " + nss.getName(), nss.getUserString("path"));
    }
    for (String n : ini.getPropertyNames("redirects")) {
        String[] parts = ini.getStringProperty("redirects", n).split("\\;");
        definitions.addNs(n, "System " + parts[0], parts[1]);
    }
    for (ImplementationGuideDefn ig : definitions.getIgs().values()) {
        if (!ig.isCore()) {
            definitions.addNs("http://hl7.org/fhir/ImplementationGuide/" + ig.getCode(), ig.getName(), ig.getHomePage());
            definitions.addNs("http://hl7.org/fhir/" + ig.getCode(), ig.getName(), ig.getHomePage());
        }
    }
    for (Compartment t : definitions.getCompartments()) {
        definitions.addNs(t.getUri(), t.getName(), "compartmentdefinition.html#" + t.getName());
    }
    List<String> list = new ArrayList<String>();
    list.addAll(definitions.getRedirectList().keySet());
    Collections.sort(list);
    for (String url : list) {
        NamespacePair p = definitions.getRedirectList().get(url);
        b.append(" <tr><td>" + Utilities.escapeXml(url) + "</td><td>" + hsplt(Utilities.escapeXml(p.desc)) + "</td><td><a href=\"" + p.page + "\">" + hsplt(Utilities.escapeXml(p.page)) + "</a></td></tr>\r\n");
    }
    b.append("</table>\r\n");
    b.append("<p>" + Integer.toString(list.size()) + " Entries</p>\r\n");
    return b.toString();
}
Also used : NamingSystemUniqueIdComponent(org.hl7.fhir.r5.model.NamingSystem.NamingSystemUniqueIdComponent) CommaSeparatedStringBuilder(org.hl7.fhir.utilities.CommaSeparatedStringBuilder) Compartment(org.hl7.fhir.definitions.model.Compartment) ArrayList(java.util.ArrayList) ImplementationGuideDefn(org.hl7.fhir.definitions.model.ImplementationGuideDefn) CodeSystem(org.hl7.fhir.r5.model.CodeSystem) NamespacePair(org.hl7.fhir.definitions.model.Definitions.NamespacePair) StructureDefinition(org.hl7.fhir.r5.model.StructureDefinition) NamingSystem(org.hl7.fhir.r5.model.NamingSystem) ConceptMap(org.hl7.fhir.r5.model.ConceptMap) ValueSet(org.hl7.fhir.r5.model.ValueSet)

Example 22 with ValueSet

use of org.hl7.fhir.dstu2.model.ValueSet in project kindling by HL7.

the class PageProcessor method r2Json.

private String r2Json(ValueSet vs) throws Exception {
    ByteArrayOutputStream bytes = new ByteArrayOutputStream();
    IParser json = new JsonParser().setOutputStyle(OutputStyle.PRETTY);
    json.setSuppressXhtml("Snipped for Brevity");
    json.compose(bytes, vs);
    return new String(bytes.toByteArray());
}
Also used : ByteArrayOutputStream(java.io.ByteArrayOutputStream) IParser(org.hl7.fhir.r5.formats.IParser) JsonParser(org.hl7.fhir.r5.formats.JsonParser)

Example 23 with ValueSet

use of org.hl7.fhir.dstu2.model.ValueSet in project kindling by HL7.

the class PageProcessor method vsCLD.

private String vsCLD(String fileTitle, ValueSet vs, String prefix) throws Exception {
    if (vs == null)
        throw new Exception("no vs?");
    ValueSet vs1 = vs.copy();
    vs1.setExpansion(null);
    vs1.setText(null);
    ImplementationGuideDefn ig = (ImplementationGuideDefn) vs.getUserData(ToolResourceUtilities.NAME_RES_IG);
    RenderingContext lrc = rc.copy().setLocalPrefix(prefix).setTooCostlyNoteNotEmpty(TOO_MANY_CODES_TEXT_NOT_EMPTY);
    RendererFactory.factory(vs1, lrc).render(vs1);
    return "<hr/>\r\n" + VS_INC_START + "" + new XhtmlComposer(XhtmlComposer.HTML).compose(vs1.getText().getDiv()) + VS_INC_END;
}
Also used : RenderingContext(org.hl7.fhir.r5.renderers.utils.RenderingContext) XhtmlComposer(org.hl7.fhir.utilities.xhtml.XhtmlComposer) ImplementationGuideDefn(org.hl7.fhir.definitions.model.ImplementationGuideDefn) ValueSet(org.hl7.fhir.r5.model.ValueSet) UcumException(org.fhir.ucum.UcumException) TransformerException(javax.xml.transform.TransformerException) TransformerConfigurationException(javax.xml.transform.TransformerConfigurationException) IOException(java.io.IOException) FHIRException(org.hl7.fhir.exceptions.FHIRException) URISyntaxException(java.net.URISyntaxException) PathEngineException(org.hl7.fhir.exceptions.PathEngineException) DefinitionException(org.hl7.fhir.exceptions.DefinitionException) FileNotFoundException(java.io.FileNotFoundException) NotImplementedException(org.apache.commons.lang3.NotImplementedException)

Example 24 with ValueSet

use of org.hl7.fhir.dstu2.model.ValueSet in project kindling by HL7.

the class ExampleInspector method fetch.

@Override
public Element fetch(IResourceValidator validator, Object appContext, String url) throws IOException, FHIRException {
    String[] parts = url.split("\\/");
    if (parts.length == 2 && definitions.hasResource(parts[0])) {
        ResourceDefn r = definitions.getResourceByName(parts[0]);
        for (Example e : r.getExamples()) {
            if (e.getElement() == null && e.hasXml()) {
                e.setElement(new org.hl7.fhir.r5.elementmodel.XmlParser(context).parse(e.getXml()));
                if (e.getElement().getProperty().getStructure().getBaseDefinition().contains("MetadataResource")) {
                    String urle = e.getElement().getChildValue("url");
                    String v = e.getElement().getChildValue("url");
                    if (urle != null && urle.startsWith("http://hl7.org/fhir") && !version.toCode().equals(v)) {
                        e.getElement().setChildValue("version", version.toCode());
                    }
                }
            }
            if (e.getElement() != null) {
                if (e.getElement().fhirType().equals("Bundle")) {
                    for (Base b : e.getElement().listChildrenByName("entry")) {
                        if (b.getChildByName("resource").hasValues()) {
                            Element res = (Element) b.getChildByName("resource").getValues().get(0);
                            if (res.fhirType().equals(parts[0]) && parts[1].equals(res.getChildValue("id"))) {
                                return res;
                            }
                        }
                    }
                } else if (e.getElement().fhirType().equals(parts[0]) && e.getId().equals(parts[1])) {
                    return e.getElement();
                }
            }
        }
        try {
            if (parts[0].equals("StructureDefinition"))
                return new ObjectConverter(context).convert(context.fetchResourceWithException(StructureDefinition.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
            if (parts[0].equals("OperationDefinition"))
                return new ObjectConverter(context).convert(context.fetchResourceWithException(OperationDefinition.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
            if (parts[0].equals("SearchParameter"))
                return new ObjectConverter(context).convert(context.fetchResourceWithException(SearchParameter.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
            if (parts[0].equals("ValueSet"))
                return new ObjectConverter(context).convert(context.fetchResourceWithException(ValueSet.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
            if (parts[0].equals("CodeSystem"))
                return new ObjectConverter(context).convert(context.fetchResourceWithException(CodeSystem.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
        } catch (Exception e) {
            return null;
        }
        return null;
    } else
        return null;
}
Also used : XmlParser(org.hl7.fhir.r5.formats.XmlParser) ObjectConverter(org.hl7.fhir.r5.elementmodel.ObjectConverter) Example(org.hl7.fhir.definitions.model.Example) Element(org.hl7.fhir.r5.elementmodel.Element) ResourceDefn(org.hl7.fhir.definitions.model.ResourceDefn) Base(org.hl7.fhir.r5.model.Base) URISyntaxException(java.net.URISyntaxException) FileNotFoundException(java.io.FileNotFoundException) SAXException(org.xml.sax.SAXException) NotImplementedException(org.apache.commons.lang3.NotImplementedException) DefinitionException(org.hl7.fhir.exceptions.DefinitionException) PathEngineException(org.hl7.fhir.exceptions.PathEngineException) ValidationException(org.everit.json.schema.ValidationException) MalformedURLException(java.net.MalformedURLException) JsonSyntaxException(com.google.gson.JsonSyntaxException) IOException(java.io.IOException) ParserConfigurationException(javax.xml.parsers.ParserConfigurationException) FHIRException(org.hl7.fhir.exceptions.FHIRException)

Example 25 with ValueSet

use of org.hl7.fhir.dstu2.model.ValueSet in project kindling by HL7.

the class CDAGenerator method addCDExtensions.

private void addCDExtensions(List<ElementDefinition> list, String n) {
    ElementDefinition ed = new ElementDefinition();
    ed.setPath(n + ".valueSet");
    seePath(ed);
    ed.setMin(0);
    ed.setMax("1");
    ed.addType().setCode("string");
    ed.addRepresentation(PropertyRepresentation.XMLATTR);
    ed.setDefinition("The valueSet extension adds an attribute for elements with a CD dataType which indicates the particular value set constraining the coded concept");
    ed.addExtension().setUrl("http://hl7.org/fhir/StructureDefinition/elementdefinition-namespace").setValue(new UriType("urn:hl7-org:sdtc"));
    ed = new ElementDefinition();
    ed.setPath(n + ".valueSetVersion");
    seePath(ed);
    ed.setMin(0);
    ed.setMax("1");
    ed.addType().setCode("string");
    ed.addRepresentation(PropertyRepresentation.XMLATTR);
    ed.addExtension().setUrl("http://hl7.org/fhir/StructureDefinition/elementdefinition-namespace").setValue(new UriType("urn:hl7-org:sdtc"));
    ed.setDefinition("The valueSetVersion extension adds an attribute for elements with a CD dataType which indicates the version of the particular value set constraining the coded concept.");
    list.add(ed);
}
Also used : ElementDefinition(org.hl7.fhir.r5.model.ElementDefinition) UriType(org.hl7.fhir.r5.model.UriType)

Aggregations

ValueSet (org.hl7.fhir.r5.model.ValueSet)159 ValueSet (org.hl7.fhir.r4.model.ValueSet)116 Test (org.junit.jupiter.api.Test)115 ArrayList (java.util.ArrayList)101 FHIRException (org.hl7.fhir.exceptions.FHIRException)100 IOException (java.io.IOException)97 ValueSet (org.hl7.fhir.dstu3.model.ValueSet)59 ValueSet (org.hl7.fhir.r4b.model.ValueSet)59 FileNotFoundException (java.io.FileNotFoundException)58 DefinitionException (org.hl7.fhir.exceptions.DefinitionException)56 TerminologyServiceException (org.hl7.fhir.exceptions.TerminologyServiceException)46 HashMap (java.util.HashMap)45 Test (org.junit.Test)45 CodeSystem (org.hl7.fhir.r5.model.CodeSystem)43 File (java.io.File)36 XhtmlNode (org.hl7.fhir.utilities.xhtml.XhtmlNode)36 SpringBootTest (org.springframework.boot.test.context.SpringBootTest)31 CommaSeparatedStringBuilder (org.hl7.fhir.utilities.CommaSeparatedStringBuilder)29 RestIntegrationTest (org.opencds.cqf.ruler.test.RestIntegrationTest)29 FileInputStream (java.io.FileInputStream)27