use of org.hl7.fhir.dstu2016may.metamodel.Element in project kindling by HL7.
the class ExampleInspector method fetch.
@Override
public Element fetch(IResourceValidator validator, Object appContext, String url) throws IOException, FHIRException {
String[] parts = url.split("\\/");
if (parts.length == 2 && definitions.hasResource(parts[0])) {
ResourceDefn r = definitions.getResourceByName(parts[0]);
for (Example e : r.getExamples()) {
if (e.getElement() == null && e.hasXml()) {
e.setElement(new org.hl7.fhir.r5.elementmodel.XmlParser(context).parse(e.getXml()));
if (e.getElement().getProperty().getStructure().getBaseDefinition().contains("MetadataResource")) {
String urle = e.getElement().getChildValue("url");
String v = e.getElement().getChildValue("url");
if (urle != null && urle.startsWith("http://hl7.org/fhir") && !version.toCode().equals(v)) {
e.getElement().setChildValue("version", version.toCode());
}
}
}
if (e.getElement() != null) {
if (e.getElement().fhirType().equals("Bundle")) {
for (Base b : e.getElement().listChildrenByName("entry")) {
if (b.getChildByName("resource").hasValues()) {
Element res = (Element) b.getChildByName("resource").getValues().get(0);
if (res.fhirType().equals(parts[0]) && parts[1].equals(res.getChildValue("id"))) {
return res;
}
}
}
} else if (e.getElement().fhirType().equals(parts[0]) && e.getId().equals(parts[1])) {
return e.getElement();
}
}
}
try {
if (parts[0].equals("StructureDefinition"))
return new ObjectConverter(context).convert(context.fetchResourceWithException(StructureDefinition.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
if (parts[0].equals("OperationDefinition"))
return new ObjectConverter(context).convert(context.fetchResourceWithException(OperationDefinition.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
if (parts[0].equals("SearchParameter"))
return new ObjectConverter(context).convert(context.fetchResourceWithException(SearchParameter.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
if (parts[0].equals("ValueSet"))
return new ObjectConverter(context).convert(context.fetchResourceWithException(ValueSet.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
if (parts[0].equals("CodeSystem"))
return new ObjectConverter(context).convert(context.fetchResourceWithException(CodeSystem.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
} catch (Exception e) {
return null;
}
return null;
} else
return null;
}
use of org.hl7.fhir.dstu2016may.metamodel.Element in project kindling by HL7.
the class BookMaker method fixReferences.
private void fixReferences(XhtmlNode parent, XhtmlNode node, String name) throws Exception {
List<XhtmlNode> wantDelete = new ArrayList<XhtmlNode>();
for (XhtmlNode child : node.getChildNodes()) {
if (child.getNodeType() == NodeType.Element) {
if ("index-only-no-book".equals(child.getAttribute("class")))
wantDelete.add(child);
else
fixReferences(node, child, name);
}
}
for (XhtmlNode c : wantDelete) node.getChildNodes().remove(c);
if (node.getName().equals("a")) {
if (node.getAttributes().containsKey("name")) {
String lname = node.getAttributes().get("name");
node.getAttributes().put("name", name + "." + lname);
// System.out.println("found anchor "+name+"."+lname);
} else if (node.getAttribute("href") != null || node.getAttributes().get("xlink:href") != null) {
String s = node.getAttributes().get("href");
if (s == null || s.length() == 0)
s = node.getAttributes().get("xlink:href");
if (s == null || s.length() == 0)
throw new Error("empty \"href\" element in \"a\" tag around " + parent.allText());
if (s.startsWith("#")) {
s = "#" + name + "." + s.substring(1);
} else if (s.startsWith("http:") || s.startsWith("https:") || s.startsWith("ftp:") || s.startsWith("mailto:")) {
// s = s;
} else {
int i = s.indexOf('.');
if (i == -1)
throw new Error("unable to understand ref: '" + s + "' on '" + node.allText() + "'");
if (s.contains("#")) {
int j = s.indexOf('#');
s = "#" + s.substring(0, i) + "." + s.substring(j + 1);
} else if (s.endsWith(".html")) {
s = "#" + s.substring(0, i);
} else {
if (!s.endsWith(".zip") && !s.endsWith(".xsd") && !s.endsWith(".xml") && !s.endsWith(".json") && !s.endsWith(".png") && !s.endsWith(".xml") && !s.endsWith(".eap") && !s.endsWith(".xmi")) {
System.out.println("odd ref: " + s + " in " + node.allText());
// s = s;
} else {
// actually, what we want to do is do what?
// System.out.println("ref to remove: "+s+" in "+node.allText());
// Utilities.copyFile(new File(page.getFolders().dstDir+s), new File(targetBin+File.separatorChar+s));
// s = "http://hl7.org/documentcenter/public/standards/FHIR"+DSTU_PATH_PORTION+"/v"+page.getVersion()+"/"+s;
}
}
}
node.getAttributes().put("href", s);
if (s.startsWith("http") && parent != null && !node.allText().equals(s)) {
node.addText(" (" + s + ") ");
}
// System.out.println("reference to "+s);
}
}
}
use of org.hl7.fhir.dstu2016may.metamodel.Element in project kindling by HL7.
the class CDAGenerator method buildInfrastructureRoot.
private void buildInfrastructureRoot() throws DefinitionException {
StructureDefinition sd = new StructureDefinition();
sd.setId("InfrastructureRoot");
sd.setUrl("http://hl7.org/fhir/cda/StructureDefinition/InfrastructureRoot");
library.put(sd.getUrl(), sd);
sd.setName("Base Type for all classes in the CDA structure");
sd.setTitle("InfrastructureRoot");
sd.setStatus(PublicationStatus.ACTIVE);
sd.setExperimental(false);
sd.setPublisher("HL7");
sd.setDescription("Defines the base elements and attributes on all CDA elements (other than data types)");
sd.setKind(StructureDefinitionKind.LOGICAL);
sd.setType(sd.getUrl());
sd.setAbstract(true);
sd.addExtension().setUrl("http://hl7.org/fhir/StructureDefinition/elementdefinition-namespace").setValue(new UriType("urn:hl7-org:v3"));
sd.setBaseDefinition("http://hl7.org/fhir/cda/StructureDefinition/ANY");
sd.setDerivation(TypeDerivationRule.SPECIALIZATION);
ElementDefinition edb = new ElementDefinition();
edb.setPath(sd.getId());
seePath(edb);
edb.setMin(1);
edb.setMax("*");
edb.addType().setCode("Element");
sd.getDifferential().getElement().add(edb);
ElementDefinition ed = new ElementDefinition();
ed.setPath("InfrastructureRoot.realmCode");
seePath(ed);
ed.setMin(0);
ed.setMax("*");
ed.setDefinition("When valued in an instance, this attribute signals the imposition of realm-specific constraints. The value of this attribute identifies the realm in question");
ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/CS");
sd.getDifferential().getElement().add(ed);
ed = new ElementDefinition();
ed.setPath("InfrastructureRoot.typeId");
seePath(ed);
ed.setMin(0);
ed.setMax("1");
ed.setDefinition("When valued in an instance, this attribute signals the imposition of constraints defined in an HL7-specified message type. This might be a common type (also known as CMET in the messaging communication environment), or content included within a wrapper. The value of this attribute provides a unique identifier for the type in question.");
ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/II");
sd.getDifferential().getElement().add(ed);
ed = new ElementDefinition();
ed.setPath("InfrastructureRoot.templateId");
seePath(ed);
ed.setMin(0);
ed.setMax("*");
ed.setDefinition("When valued in an instance, this attribute signals the imposition of a set of template-defined constraints. The value of this attribute provides a unique identifier for the templates in question");
ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/II");
sd.getDifferential().getElement().add(ed);
new ProfileUtilities(null, null, null).setIds(sd, true);
structures.add(sd);
}
use of org.hl7.fhir.dstu2016may.metamodel.Element in project kindling by HL7.
the class CDAGenerator method checkType.
private void checkType(TypeRefComponent t) {
String id = t.getWorkingCode();
if (Utilities.existsInList(id, "string", "Element", "code", "boolean", "Resource"))
return;
for (StructureDefinition sd : structures) {
if (sd.getId().equals(fix(id)))
return;
}
if (id.equals("http://hl7.org/fhir/cda/StructureDefinition/PN") || id.equals("http://hl7.org/fhir/cda/StructureDefinition/ON"))
t.setCode("http://hl7.org/fhir/cda/StructureDefinition/EN");
else if (id.equals("NARRATIVE"))
t.setCode("xhtml");
else
System.out.println("Unknown data type " + id);
}
use of org.hl7.fhir.dstu2016may.metamodel.Element in project kindling by HL7.
the class CDAGenerator method processDataType.
private void processDataType(Element dt, String n, String p) throws FileNotFoundException, IOException, FHIRFormatError, DefinitionException {
if (!Utilities.existsInList(n, "TYPE", "BN", "BIN", "CO", "UID", "OID", "UUID", "RUID", "URL", "ADXP", "ENXP", "PN", "TN", "ON", "RTO", "CAL", "CLCY", "SET", "LIST", "GLIST", "SLIST", "BAG", "HXIT", "HIST", "UVP", "NPPD", "PPD")) {
if (n.equals("GTS"))
n = "SXCM_TS";
System.out.print(" " + n);
StructureDefinition sd = new StructureDefinition();
sd.setId(fix(n));
sd.setUrl("http://hl7.org/fhir/cda/StructureDefinition/" + fix(n));
library.put(sd.getUrl(), sd);
sd.setName("V3 Data type " + n + " (" + dt.getAttribute("title") + ")");
sd.setTitle(sd.getName());
sd.setStatus(PublicationStatus.ACTIVE);
sd.setExperimental(false);
sd.setPublisher("HL7");
sd.setDescription(getDefinition(dt));
sd.setType(sd.getUrl());
sd.setKind(StructureDefinitionKind.LOGICAL);
sd.setAbstract("true".equals(dt.getAttribute("isAbstract")));
sd.addExtension().setUrl("http://hl7.org/fhir/StructureDefinition/elementdefinition-namespace").setValue(new UriType("urn:hl7-org:v3"));
Element derived = XMLUtil.getNamedChild(dt, "mif:derivedFrom");
if (Utilities.existsInList(n, "ST", "ED", "TEL", "AD", "EN", "IVL_PQ", "IVL_INT", "TS")) {
sd.setBaseDefinition("http://hl7.org/fhir/cda/StructureDefinition/ANY");
} else if (Utilities.existsInList(n, "SXCM_TS")) {
sd.setBaseDefinition("http://hl7.org/fhir/cda/StructureDefinition/TS");
} else if (n.equals("PIVL_TS") || n.equals("EIVL_TS") || n.equals("IVL_TS")) {
sd.setBaseDefinition("http://hl7.org/fhir/cda/StructureDefinition/SXCM_TS");
} else if (derived != null) {
sd.setBaseDefinition("http://hl7.org/fhir/cda/StructureDefinition/" + XMLUtil.getNamedChildAttribute(derived, "mif:targetDatatype", "name"));
} else
sd.setBaseDefinition("http://hl7.org/fhir/StructureDefinition/Element");
sd.setDerivation(TypeDerivationRule.SPECIALIZATION);
ElementDefinition edb = new ElementDefinition();
edb.setPath(sd.getId());
seePath(edb);
edb.setMin(1);
edb.setMax("*");
edb.addType().setCode("Element");
sd.getDifferential().getElement().add(edb);
if (n.equals("ED"))
addEDElements(sd.getDifferential().getElement());
if (n.equals("SC"))
copyAttributes(sd, getDefinition("CV"), "code", "codeSystem", "codeSystemVersion", "displayName");
if (primitiveTypes.containsKey(n))
addValueAttribute(sd.getDifferential().getElement(), n, primitiveTypes.get(n));
if (n.equals("TS"))
edb.addExtension("http://hl7.org/fhir/StructureDefinition/elementdefinition-timeformat", new CodeType("YYYYMMDDHHMMSS.UUUU[+|-ZZzz]"));
if (n.equals("TEL"))
addValueAttribute(sd.getDifferential().getElement(), n, "uri");
if (n.equals("SXCM_TS")) {
addOperatorAttribute(sd.getDifferential().getElement(), "SXCM_TS");
sd.setAbstract(true);
}
if (n.equals("AD")) {
addParts(sd.getDifferential().getElement(), n, "delimiter", "country", "state", "county", "city", "postalCode", "streetAddressLine", "houseNumber", "houseNumberNumeric", "direction", "streetName", "streetNameBase", "streetNameType", "additionalLocator", "unitID", "unitType", "careOf", "censusTract", "deliveryAddressLine", "deliveryInstallationType", "deliveryInstallationArea", "deliveryInstallationQualifier", "deliveryMode", "deliveryModeIdentifier", "buildingNumberSuffix", "postBox", "precinct");
addTextItem(sd.getDifferential().getElement(), n);
}
if (n.equals("EN")) {
addParts(sd.getDifferential().getElement(), n, "delimiter", "family", "given", "prefix", "suffix");
addTextItem(sd.getDifferential().getElement(), n);
}
List<Element> props = new ArrayList<Element>();
XMLUtil.getNamedChildren(dt, "mif:property", props);
for (Element prop : props) {
processProperty(sd.getDifferential().getElement(), n, prop, p);
}
if (n.equals("TS") || n.equals("PQ"))
addInclusiveAttribute(sd.getDifferential().getElement(), n);
if (n.equals("CE") || n.equals("CV") || n.equals("CD"))
addCDExtensions(sd.getDifferential().getElement(), n);
new ProfileUtilities(null, null, null).setIds(sd, true);
structures.add(sd);
}
}
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