Examples with SimpleQuantity org.hl7.fhir.dstu2016may.model.SimpleQuantity used on opensource projects

Example 11 with SimpleQuantity

use of org.hl7.fhir.dstu2016may.model.SimpleQuantity in project synthea by synthetichealth.

the class FhirStu3 method medicationAdministration.

/**
 * Add a MedicationAdministration if needed for the given medication.
 *
 * @param rand Source of randomness to use when generating ids etc
 * @param personEntry       The Entry for the Person
 * @param bundle            Bundle to add the MedicationAdministration to
 * @param encounterEntry    Current Encounter entry
 * @param medication        The Medication
 * @param medicationRequest The related medicationRequest
 * @return The added Entry
 */
private static BundleEntryComponent medicationAdministration(RandomNumberGenerator rand, BundleEntryComponent personEntry, Bundle bundle, BundleEntryComponent encounterEntry, Medication medication, MedicationRequest medicationRequest) {
    MedicationAdministration medicationResource = new MedicationAdministration();
    medicationResource.setSubject(new Reference(personEntry.getFullUrl()));
    medicationResource.setContext(new Reference(encounterEntry.getFullUrl()));
    Code code = medication.codes.get(0);
    String system = code.system.equals("SNOMED-CT") ? SNOMED_URI : RXNORM_URI;
    medicationResource.setMedication(mapCodeToCodeableConcept(code, system));
    medicationResource.setEffective(new DateTimeType(new Date(medication.start)));
    medicationResource.setStatus(MedicationAdministrationStatus.fromCode("completed"));
    if (medication.prescriptionDetails != null) {
        JsonObject rxInfo = medication.prescriptionDetails;
        MedicationAdministrationDosageComponent dosage = new MedicationAdministrationDosageComponent();
        // as_needed is true if present
        if ((rxInfo.has("dosage")) && (!rxInfo.has("as_needed"))) {
            Quantity dose = new SimpleQuantity().setValue(rxInfo.get("dosage").getAsJsonObject().get("amount").getAsDouble());
            dosage.setDose((SimpleQuantity) dose);
            if (rxInfo.has("instructions")) {
                for (JsonElement instructionElement : rxInfo.get("instructions").getAsJsonArray()) {
                    JsonObject instruction = instructionElement.getAsJsonObject();
                    dosage.setText(instruction.get("display").getAsString());
                }
            }
        }
        medicationResource.setDosage(dosage);
    }
    if (!medication.reasons.isEmpty()) {
        // Only one element in list
        Code reason = medication.reasons.get(0);
        for (BundleEntryComponent entry : bundle.getEntry()) {
            if (entry.getResource().fhirType().equals("Condition")) {
                Condition condition = (Condition) entry.getResource();
                // Only one element in list
                Coding coding = condition.getCode().getCoding().get(0);
                if (reason.code.equals(coding.getCode())) {
                    medicationResource.addReasonReference().setReference(entry.getFullUrl());
                }
            }
        }
    }
    BundleEntryComponent medicationAdminEntry = newEntry(rand, bundle, medicationResource);
    return medicationAdminEntry;
}

Example 12 with SimpleQuantity

use of org.hl7.fhir.dstu2016may.model.SimpleQuantity in project synthea by synthetichealth.

the class FhirStu3 method medication.

/**
 * Map the given Medication to a FHIR MedicationRequest resource, and add it to the given Bundle.
 *
 * @param rand Source of randomness to use when generating ids etc
 * @param personEntry The Entry for the Person
 * @param bundle Bundle to add the Medication to
 * @param encounterEntry Current Encounter entry
 * @param medication The Medication
 * @return The added Entry
 */
private static BundleEntryComponent medication(RandomNumberGenerator rand, BundleEntryComponent personEntry, Bundle bundle, BundleEntryComponent encounterEntry, Medication medication) {
    MedicationRequest medicationResource = new MedicationRequest();
    medicationResource.setSubject(new Reference(personEntry.getFullUrl()));
    medicationResource.setContext(new Reference(encounterEntry.getFullUrl()));
    Code code = medication.codes.get(0);
    String system = code.system.equals("SNOMED-CT") ? SNOMED_URI : RXNORM_URI;
    medicationResource.setMedication(mapCodeToCodeableConcept(code, system));
    medicationResource.setAuthoredOn(new Date(medication.start));
    medicationResource.setIntent(MedicationRequestIntent.ORDER);
    org.hl7.fhir.dstu3.model.Encounter encounter = (org.hl7.fhir.dstu3.model.Encounter) encounterEntry.getResource();
    MedicationRequestRequesterComponent requester = new MedicationRequestRequesterComponent();
    requester.setAgent(encounter.getParticipantFirstRep().getIndividual());
    requester.setOnBehalfOf(encounter.getServiceProvider());
    medicationResource.setRequester(requester);
    if (medication.stop != 0L) {
        medicationResource.setStatus(MedicationRequestStatus.STOPPED);
    } else {
        medicationResource.setStatus(MedicationRequestStatus.ACTIVE);
    }
    if (!medication.reasons.isEmpty()) {
        // Only one element in list
        Code reason = medication.reasons.get(0);
        for (BundleEntryComponent entry : bundle.getEntry()) {
            if (entry.getResource().fhirType().equals("Condition")) {
                Condition condition = (Condition) entry.getResource();
                // Only one element in list
                Coding coding = condition.getCode().getCoding().get(0);
                if (reason.code.equals(coding.getCode())) {
                    medicationResource.addReasonReference().setReference(entry.getFullUrl());
                }
            }
        }
    }
    if (medication.prescriptionDetails != null) {
        JsonObject rxInfo = medication.prescriptionDetails;
        Dosage dosage = new Dosage();
        dosage.setSequence(1);
        // as_needed is true if present
        dosage.setAsNeeded(new BooleanType(rxInfo.has("as_needed")));
        // as_needed is true if present
        if ((rxInfo.has("dosage")) && (!rxInfo.has("as_needed"))) {
            Timing timing = new Timing();
            TimingRepeatComponent timingRepeatComponent = new TimingRepeatComponent();
            timingRepeatComponent.setFrequency(rxInfo.get("dosage").getAsJsonObject().get("frequency").getAsInt());
            timingRepeatComponent.setPeriod(rxInfo.get("dosage").getAsJsonObject().get("period").getAsDouble());
            timingRepeatComponent.setPeriodUnit(convertUcumCode(rxInfo.get("dosage").getAsJsonObject().get("unit").getAsString()));
            timing.setRepeat(timingRepeatComponent);
            dosage.setTiming(timing);
            Quantity dose = new SimpleQuantity().setValue(rxInfo.get("dosage").getAsJsonObject().get("amount").getAsDouble());
            dosage.setDose(dose);
            if (rxInfo.has("instructions")) {
                for (JsonElement instructionElement : rxInfo.get("instructions").getAsJsonArray()) {
                    JsonObject instruction = instructionElement.getAsJsonObject();
                    Code instructionCode = new Code(SNOMED_URI, instruction.get("code").getAsString(), instruction.get("display").getAsString());
                    dosage.addAdditionalInstruction(mapCodeToCodeableConcept(instructionCode, SNOMED_URI));
                }
            }
        }
        List<Dosage> dosageInstruction = new ArrayList<Dosage>();
        dosageInstruction.add(dosage);
        medicationResource.setDosageInstruction(dosageInstruction);
    }
    if (USE_SHR_EXTENSIONS) {
        medicationResource.addExtension().setUrl(SHR_EXT + "shr-base-ActionCode-extension").setValue(PRESCRIPTION_OF_DRUG_CC);
        medicationResource.setMeta(new Meta().addProfile(SHR_EXT + "shr-medication-MedicationRequested"));
        // required fields for this profile are status, action-RequestedContext-extension,
        // medication[x]subject, authoredOn, requester
        Extension requestedContext = new Extension();
        requestedContext.setUrl(SHR_EXT + "shr-action-RequestedContext-extension");
        requestedContext.addExtension(SHR_EXT + "shr-action-Status-extension", new CodeType("completed"));
        requestedContext.addExtension(SHR_EXT + "shr-action-RequestIntent-extension", new CodeType("original-order"));
        medicationResource.addExtension(requestedContext);
    }
    BundleEntryComponent medicationEntry = newEntry(rand, bundle, medicationResource);
    // create new claim for medication
    medicationClaim(rand, personEntry, bundle, encounterEntry, medication.claim, medicationEntry);
    // Create new administration for medication, if needed
    if (medication.administration) {
        medicationAdministration(rand, personEntry, bundle, encounterEntry, medication, medicationResource);
    }
    return medicationEntry;
}

Example 13 with SimpleQuantity

use of org.hl7.fhir.dstu2016may.model.SimpleQuantity in project synthea by synthetichealth.

the class FhirStu3 method supplyDelivery.

/**
 * Map the JsonObject for a Supply into a FHIR SupplyDelivery and add it to the Bundle.
 *
 * @param rand           Source of randomness to use when generating ids etc
 * @param personEntry    The Person entry.
 * @param bundle         Bundle to add to.
 * @param supply         The supplied object to add.
 * @param encounter      The encounter during which the supplies were delivered
 * @return The added Entry.
 */
private static BundleEntryComponent supplyDelivery(RandomNumberGenerator rand, BundleEntryComponent personEntry, Bundle bundle, HealthRecord.Supply supply, Encounter encounter) {
    SupplyDelivery supplyResource = new SupplyDelivery();
    supplyResource.setStatus(SupplyDeliveryStatus.COMPLETED);
    supplyResource.setPatient(new Reference(personEntry.getFullUrl()));
    CodeableConcept type = new CodeableConcept();
    type.addCoding().setCode("device").setDisplay("Device").setSystem("http://hl7.org/fhir/supply-item-type");
    supplyResource.setType(type);
    SupplyDeliverySuppliedItemComponent suppliedItem = new SupplyDeliverySuppliedItemComponent();
    suppliedItem.setItem(mapCodeToCodeableConcept(supply.codes.get(0), SNOMED_URI));
    SimpleQuantity quantity = new SimpleQuantity();
    quantity.setValue(supply.quantity);
    suppliedItem.setQuantity(quantity);
    supplyResource.setSuppliedItem(suppliedItem);
    supplyResource.setOccurrence(convertFhirDateTime(supply.start, true));
    return newEntry(rand, bundle, supplyResource);
}

Example 14 with SimpleQuantity

use of org.hl7.fhir.dstu2016may.model.SimpleQuantity in project synthea by synthetichealth.

the class FhirStu3 method mapValueToSampledData.

/**
 * Maps a Synthea internal SampledData object to the FHIR standard SampledData
 * representation.
 *
 * @param value Synthea internal SampledData instance
 * @param unit Observation unit value
 * @return
 */
static org.hl7.fhir.dstu3.model.SampledData mapValueToSampledData(Components.SampledData value, String unit) {
    org.hl7.fhir.dstu3.model.SampledData recordData = new org.hl7.fhir.dstu3.model.SampledData();
    SimpleQuantity origin = new SimpleQuantity();
    origin.setValue(new BigDecimal(value.originValue)).setCode(unit).setSystem(UNITSOFMEASURE_URI).setUnit(unit);
    recordData.setOrigin(origin);
    // Use the period from the first series. They should all be the same.
    // FHIR output is milliseconds so we need to convert from TimeSeriesData seconds.
    recordData.setPeriod(value.series.get(0).getPeriod() * 1000);
    // Set optional fields if they were provided
    if (value.factor != null) {
        recordData.setFactor(value.factor);
    }
    if (value.lowerLimit != null) {
        recordData.setLowerLimit(value.lowerLimit);
    }
    if (value.upperLimit != null) {
        recordData.setUpperLimit(value.upperLimit);
    }
    recordData.setDimensions(value.series.size());
    recordData.setData(ExportHelper.sampledDataToValueString(value));
    return recordData;
}

Example 15 with SimpleQuantity

use of org.hl7.fhir.dstu2016may.model.SimpleQuantity in project beneficiary-fhir-data by CMSgov.

the class PartDEventTransformer method transformClaim.

/**
 * @param claimGroup the CCW {@link PartDEvent} to transform
 * @return a FHIR {@link ExplanationOfBenefit} resource that represents the specified {@link
 *     PartDEvent}
 */
private static ExplanationOfBenefit transformClaim(PartDEvent claimGroup) {
    ExplanationOfBenefit eob = new ExplanationOfBenefit();
    // Common group level fields between all claim types
    TransformerUtils.mapEobCommonClaimHeaderData(eob, claimGroup.getEventId(), claimGroup.getBeneficiaryId(), ClaimType.PDE, claimGroup.getClaimGroupId().toPlainString(), MedicareSegment.PART_D, Optional.of(claimGroup.getPrescriptionFillDate()), Optional.of(claimGroup.getPrescriptionFillDate()), Optional.empty(), claimGroup.getFinalAction());
    eob.addIdentifier(TransformerUtils.createIdentifier(CcwCodebookVariable.RX_SRVC_RFRNC_NUM, claimGroup.getPrescriptionReferenceNumber().toPlainString()));
    // map eob type codes into FHIR
    TransformerUtils.mapEobType(eob, ClaimType.PDE, Optional.empty(), Optional.empty());
    eob.getInsurance().getCoverage().addExtension(TransformerUtils.createExtensionIdentifier(CcwCodebookVariable.PLAN_CNTRCT_REC_ID, claimGroup.getPlanContractId()));
    eob.getInsurance().getCoverage().addExtension(TransformerUtils.createExtensionIdentifier(CcwCodebookVariable.PLAN_PBP_REC_NUM, claimGroup.getPlanBenefitPackageId()));
    if (claimGroup.getPaymentDate().isPresent()) {
        eob.getPayment().setDate(TransformerUtils.convertToDate(claimGroup.getPaymentDate().get()));
    }
    ItemComponent rxItem = eob.addItem();
    rxItem.setSequence(1);
    ExplanationOfBenefit.DetailComponent detail = new ExplanationOfBenefit.DetailComponent();
    switch(claimGroup.getCompoundCode()) {
        // COMPOUNDED
        case 2:
            /* Pharmacy dispense invoice for a compound */
            detail.getType().addCoding(new Coding().setSystem(V3ActCode.RXCINV.getSystem()).setCode(V3ActCode.RXCINV.toCode()).setDisplay(V3ActCode.RXCINV.getDisplay()));
            break;
        // NOT_COMPOUNDED
        case 1:
            /*
         * Pharmacy dispense invoice not involving a compound
         */
            detail.getType().addCoding(new Coding().setSystem(V3ActCode.RXCINV.getSystem()).setCode(V3ActCode.RXDINV.toCode()).setDisplay(V3ActCode.RXDINV.getDisplay()));
            break;
        // NOT_SPECIFIED
        case 0:
            /*
         * Pharmacy dispense invoice not specified - do not set a value
         */
            break;
        default:
            /*
         * Unexpected value encountered - compound code should be either
         * compounded or not compounded.
         */
            throw new InvalidRifValueException("Unexpected value encountered - compound code should be either compounded or not compounded: " + claimGroup.getCompoundCode());
    }
    rxItem.addDetail(detail);
    rxItem.setServiced(new DateType().setValue(TransformerUtils.convertToDate(claimGroup.getPrescriptionFillDate())));
    /*
     * Create an adjudication for either CVRD_D_PLAN_PD_AMT or NCVRD_PLAN_PD_AMT,
     * depending on the value of DRUG_CVRG_STUS_CD. Stick DRUG_CVRG_STUS_CD into the
     * adjudication.reason field.
     */
    CodeableConcept planPaidAmountAdjudicationCategory;
    BigDecimal planPaidAmountAdjudicationValue;
    if (claimGroup.getDrugCoverageStatusCode() == 'C') {
        planPaidAmountAdjudicationCategory = TransformerUtils.createAdjudicationCategory(CcwCodebookVariable.CVRD_D_PLAN_PD_AMT);
        planPaidAmountAdjudicationValue = claimGroup.getPartDPlanCoveredPaidAmount();
    } else {
        planPaidAmountAdjudicationCategory = TransformerUtils.createAdjudicationCategory(CcwCodebookVariable.NCVRD_PLAN_PD_AMT);
        planPaidAmountAdjudicationValue = claimGroup.getPartDPlanNonCoveredPaidAmount();
    }
    rxItem.addAdjudication().setCategory(planPaidAmountAdjudicationCategory).setReason(TransformerUtils.createCodeableConcept(eob, CcwCodebookVariable.DRUG_CVRG_STUS_CD, claimGroup.getDrugCoverageStatusCode())).setAmount(TransformerUtils.createMoney(planPaidAmountAdjudicationValue));
    rxItem.addAdjudication().setCategory(TransformerUtils.createAdjudicationCategory(CcwCodebookVariable.GDC_BLW_OOPT_AMT)).setAmount(TransformerUtils.createMoney(claimGroup.getGrossCostBelowOutOfPocketThreshold()));
    rxItem.addAdjudication().setCategory(TransformerUtils.createAdjudicationCategory(CcwCodebookVariable.GDC_ABV_OOPT_AMT)).setAmount(TransformerUtils.createMoney(claimGroup.getGrossCostAboveOutOfPocketThreshold()));
    rxItem.addAdjudication().setCategory(TransformerUtils.createAdjudicationCategory(CcwCodebookVariable.PTNT_PAY_AMT)).setAmount(TransformerUtils.createMoney(claimGroup.getPatientPaidAmount()));
    rxItem.addAdjudication().setCategory(TransformerUtils.createAdjudicationCategory(CcwCodebookVariable.OTHR_TROOP_AMT)).setAmount(TransformerUtils.createMoney(claimGroup.getOtherTrueOutOfPocketPaidAmount()));
    rxItem.addAdjudication().setCategory(TransformerUtils.createAdjudicationCategory(CcwCodebookVariable.LICS_AMT)).setAmount(TransformerUtils.createMoney(claimGroup.getLowIncomeSubsidyPaidAmount()));
    rxItem.addAdjudication().setCategory(TransformerUtils.createAdjudicationCategory(CcwCodebookVariable.PLRO_AMT)).setAmount(TransformerUtils.createMoney(claimGroup.getPatientLiabilityReductionOtherPaidAmount()));
    rxItem.addAdjudication().setCategory(TransformerUtils.createAdjudicationCategory(CcwCodebookVariable.TOT_RX_CST_AMT)).setAmount(TransformerUtils.createMoney(claimGroup.getTotalPrescriptionCost()));
    rxItem.addAdjudication().setCategory(TransformerUtils.createAdjudicationCategory(CcwCodebookVariable.RPTD_GAP_DSCNT_NUM)).setAmount(TransformerUtils.createMoney(claimGroup.getGapDiscountAmount()));
    if (claimGroup.getPrescriberIdQualifierCode() == null || !claimGroup.getPrescriberIdQualifierCode().equalsIgnoreCase("01"))
        throw new InvalidRifValueException("Prescriber ID Qualifier Code is invalid: " + claimGroup.getPrescriberIdQualifierCode());
    if (claimGroup.getPrescriberId() != null) {
        TransformerUtils.addCareTeamPractitioner(eob, rxItem, TransformerConstants.CODING_NPI_US, claimGroup.getPrescriberId(), ClaimCareteamrole.PRIMARY);
    }
    rxItem.setService(TransformerUtils.createCodeableConcept(TransformerConstants.CODING_NDC, null, TransformerUtils.retrieveFDADrugCodeDisplay(claimGroup.getNationalDrugCode()), claimGroup.getNationalDrugCode()));
    SimpleQuantity quantityDispensed = new SimpleQuantity();
    quantityDispensed.setValue(claimGroup.getQuantityDispensed());
    rxItem.setQuantity(quantityDispensed);
    rxItem.getQuantity().addExtension(TransformerUtils.createExtensionQuantity(CcwCodebookVariable.FILL_NUM, claimGroup.getFillNumber()));
    rxItem.getQuantity().addExtension(TransformerUtils.createExtensionQuantity(CcwCodebookVariable.DAYS_SUPLY_NUM, claimGroup.getDaysSupply()));
    /*
     * This chart is to dosplay the different code values for the different service provider id qualifer
     * codes below
     *   Code	    Code value
     *   01        National Provider Identifier (NPI)
     *   06        Unique Physician Identification Number (UPIN)
     *   07        National Council for Prescription Drug Programs (NCPDP) provider identifier
     *   08        State license number
     *   11        Federal tax number
     *   99        Other
     */
    IdentifierType identifierType;
    if (!claimGroup.getServiceProviderId().isEmpty()) {
        switch(claimGroup.getServiceProviderIdQualiferCode()) {
            case "01":
                identifierType = IdentifierType.NPI;
                break;
            case "06":
                identifierType = IdentifierType.UPIN;
                break;
            case "07":
                identifierType = IdentifierType.NCPDP;
                break;
            case "08":
                identifierType = IdentifierType.SL;
                break;
            case "11":
                identifierType = IdentifierType.TAX;
                break;
            default:
                identifierType = null;
                break;
        }
        if (identifierType != null) {
            eob.setOrganization(TransformerUtils.createIdentifierReference(identifierType, claimGroup.getServiceProviderId()));
            eob.setFacility(TransformerUtils.createIdentifierReference(identifierType, claimGroup.getServiceProviderId()));
        }
        eob.getFacility().addExtension(TransformerUtils.createExtensionCoding(eob, CcwCodebookVariable.PHRMCY_SRVC_TYPE_CD, claimGroup.getPharmacyTypeCode()));
    }
    /*
     * Storing code values in EOB.information below
     */
    TransformerUtils.addInformationWithCode(eob, CcwCodebookVariable.DAW_PROD_SLCTN_CD, CcwCodebookVariable.DAW_PROD_SLCTN_CD, claimGroup.getDispenseAsWrittenProductSelectionCode());
    if (claimGroup.getDispensingStatusCode().isPresent())
        TransformerUtils.addInformationWithCode(eob, CcwCodebookVariable.DSPNSNG_STUS_CD, CcwCodebookVariable.DSPNSNG_STUS_CD, claimGroup.getDispensingStatusCode());
    TransformerUtils.addInformationWithCode(eob, CcwCodebookVariable.DRUG_CVRG_STUS_CD, CcwCodebookVariable.DRUG_CVRG_STUS_CD, claimGroup.getDrugCoverageStatusCode());
    if (claimGroup.getAdjustmentDeletionCode().isPresent())
        TransformerUtils.addInformationWithCode(eob, CcwCodebookVariable.ADJSTMT_DLTN_CD, CcwCodebookVariable.ADJSTMT_DLTN_CD, claimGroup.getAdjustmentDeletionCode());
    if (claimGroup.getNonstandardFormatCode().isPresent())
        TransformerUtils.addInformationWithCode(eob, CcwCodebookVariable.NSTD_FRMT_CD, CcwCodebookVariable.NSTD_FRMT_CD, claimGroup.getNonstandardFormatCode());
    if (claimGroup.getPricingExceptionCode().isPresent())
        TransformerUtils.addInformationWithCode(eob, CcwCodebookVariable.PRCNG_EXCPTN_CD, CcwCodebookVariable.PRCNG_EXCPTN_CD, claimGroup.getPricingExceptionCode());
    if (claimGroup.getCatastrophicCoverageCode().isPresent())
        TransformerUtils.addInformationWithCode(eob, CcwCodebookVariable.CTSTRPHC_CVRG_CD, CcwCodebookVariable.CTSTRPHC_CVRG_CD, claimGroup.getCatastrophicCoverageCode());
    if (claimGroup.getPrescriptionOriginationCode().isPresent())
        TransformerUtils.addInformationWithCode(eob, CcwCodebookVariable.RX_ORGN_CD, CcwCodebookVariable.RX_ORGN_CD, claimGroup.getPrescriptionOriginationCode());
    if (claimGroup.getBrandGenericCode().isPresent())
        TransformerUtils.addInformationWithCode(eob, CcwCodebookVariable.BRND_GNRC_CD, CcwCodebookVariable.BRND_GNRC_CD, claimGroup.getBrandGenericCode());
    TransformerUtils.addInformationWithCode(eob, CcwCodebookVariable.PHRMCY_SRVC_TYPE_CD, CcwCodebookVariable.PHRMCY_SRVC_TYPE_CD, claimGroup.getPharmacyTypeCode());
    TransformerUtils.addInformationWithCode(eob, CcwCodebookVariable.PTNT_RSDNC_CD, CcwCodebookVariable.PTNT_RSDNC_CD, claimGroup.getPatientResidenceCode());
    if (claimGroup.getSubmissionClarificationCode().isPresent())
        TransformerUtils.addInformationWithCode(eob, CcwCodebookVariable.SUBMSN_CLR_CD, CcwCodebookVariable.SUBMSN_CLR_CD, claimGroup.getSubmissionClarificationCode());
    TransformerUtils.setLastUpdated(eob, claimGroup.getLastUpdated());
    return eob;
}