Examples with SimpleQuantity org.hl7.fhir.dstu2016may.model.SimpleQuantity used on opensource projects

Example 21 with SimpleQuantity

use of org.hl7.fhir.dstu2016may.model.SimpleQuantity in project kindling by HL7.

the class JsonLDGenerator method generateElement.

private void generateElement(ElementDefn root, String name, ElementDefn e, JsonObject base, Set<String> types) throws Exception {
    if ((e.getTypes().size() == 1 && e.getTypes().get(0).isWildcardType())) {
        if (!e.getName().contains("[x]"))
            throw new Exception("Element " + e.getName() + " in " + root.getName() + " has multiple types as a choice doesn't have a [x] in the element name");
        for (TypeRef tr : datatypes) {
            String tn = tr.getName();
            if (tn.equals("SimpleQuantity"))
                tn = "Quantity";
            else
                tn = Utilities.capitalize(tn);
            String en = e.getName().substring(0, e.getName().length() - 3) + tn;
            JsonObject property = new JsonObject();
            base.add(name + "." + en, property);
            property.addProperty("@id", "http://hl7.org/fhir/" + name + "." + en);
        }
    // if (e.getTypes().size() == 1)
    // generateAny(root, e, e.getName().replace("[x]", ""), props, relative);
    // else {
    // for (TypeRef t : e.getTypes()) {
    // JsonObject property = new JsonObject();
    // JsonObject property_ = null;
    // String en = e.getName().replace("[x]",  "");
    // props.add(en+upFirst(t.getName()), property);
    // property.addProperty("description", e.getDefinition());
    // String tref = null;
    // String type = null;
    // String pattern = null;
    // if (definitions.getPrimitives().containsKey(t.getName())) {
    // DefinedCode def = definitions.getPrimitives().get(t.getName());
    // type = def.getJsonType();
    // pattern = def.getRegex();
    // if (!Utilities.noString(pattern))
    // property.addProperty("pattern", pattern);
    // 
    // property.addProperty("type", type);
    // property_ = new JsonObject();
    // props.add("_"+en+upFirst(t.getName()), property_);
    // property_.addProperty("description", "Extensions for "+en+upFirst(t.getName()));
    // tref = (relative ? "#" : "Element.schema.json#") +"/definitions/Element";
    // property_.addProperty("$ref", tref);
    // } else {
    // String tn = encodeType(e, t, true);
    // tref = (relative ? "#" : tn.replace(".",  "_")+".schema.json#") +"/definitions/"+tn.replace(".",  "_");
    // property.addProperty("$ref", tref);
    // }
    // }
    // }
    } else if (e.getName().endsWith("[x]")) {
        for (TypeRef tr : e.getTypes()) {
            String tn = tr.getName();
            if (tn.equals("SimpleQuantity"))
                tn = "Quantity";
            else
                tn = Utilities.capitalize(tn);
            String en = e.getName().substring(0, e.getName().length() - 3) + tn;
            JsonObject property = new JsonObject();
            base.add(name + "." + en, property);
            property.addProperty("@id", "http://hl7.org/fhir/" + name + "." + en);
        }
    } else {
        JsonObject property = new JsonObject();
        base.add(name + "." + e.getName(), property);
        if (e.getPath() == null)
            property.addProperty("@id", "http://hl7.org/fhir/" + name + "." + e.getName());
        else
            property.addProperty("@id", "http://hl7.org/fhir/" + e.getPath());
    // if we're using lists:
    // if (e.unbounded())
    // property.addProperty("@container", "@list");
    // property.addProperty("fhir-@type", "http://hl7.org/fhir/"+e.typeCode());
    // String tref = null;
    // String type = null;
    // String pattern = null;
    // 
    // if (e.usesCompositeType()/* && types.containsKey(root.getElementByName(e.typeCode().substring(1)))*/) {
    // ElementDefn ref = root.getElementByName(definitions, e.typeCode().substring(1), true, false);
    // String rtn = types.get(ref);
    // if (rtn == null)
    // throw new Exception("logic error in schema generator (null composite reference in "+types.toString()+")");
    // 
    // if(rtn == "Type")
    // rtn = "Element";
    // type=rtn;
    // tref = "#/definitions/"+rtn.replace(".",  "_");
    // } else if (e.getTypes().size() == 0 && e.getElements().size() > 0){
    // tref = "#/definitions/"+types.get(e).replace(".",  "_");
    // type=types.get(e).replace(".",  "_");
    // }	else if (e.getTypes().size() == 1) {
    // String tn = encodeType(e, e.getTypes().get(0), true);
    // type=tn;
    // if (definitions.getPrimitives().containsKey(e.typeCode())) {
    // DefinedCode def = definitions.getPrimitives().get(e.typeCode());
    // type = def.getJsonType();
    // pattern = def.getRegex();
    // property_ = new JsonObject();
    // props.add("_"+e.getName(), property_);
    // property_.addProperty("description", "Extensions for "+e.getName());
    // tref = (relative ? "#" : "Element.schema.json#") +"/definitions/Element";
    // BindingSpecification cd = e.getBinding();
    // 
    // if (cd != null && (cd.getBinding() == BindingSpecification.BindingMethod.CodeList)) {
    // ValueSet vs = cd.getValueSet();
    // if (vs!= null) {
    // ValueSet ex = workerContext.expandVS(vs, true, false).getValueset();
    // JsonArray enums = new JsonArray();
    // for (ValueSetExpansionContainsComponent cc : ex.getExpansion().getContains()) {
    // enums.add(new JsonPrimitive(cc.getCode()));
    // }
    // property.add("enum", enums);
    // pattern = null;
    // }
    // }
    // } else {
    // tref = (relative ? "#" : tn.replace(".",  "_")+".schema.json#") +"/definitions/"+tn.replace(".",  "_");
    // }
    // } else
    // throw new Exception("how do we get here? "+e.getName()+" in "+root.getName()+" "+Integer.toString(e.getTypes().size()));
    // 
    // if (e.unbounded()) {
    // property.addProperty("type", "array");
    // if (property_ != null) {
    // property_.addProperty("type", "array");
    // JsonObject items = new JsonObject();
    // property.add("items", items);
    // items.addProperty("type", type);
    // if (!Utilities.noString(pattern))
    // items.addProperty("pattern", pattern);
    // 
    // items = new JsonObject();
    // property_.add("items", items);
    // items.addProperty("$ref", tref);
    // } else {
    // JsonObject items = new JsonObject();
    // property.add("items", items);
    // items.addProperty("$ref", tref);
    // }
    // } else {
    // if (property_ != null) {
    // property.addProperty("type", type);
    // if (!Utilities.noString(pattern))
    // property.addProperty("pattern", pattern);
    // 
    // property_.addProperty("$ref", tref);
    // } else if("div".equals(e.getName()) && "xhtml".equals(type)) {
    // // Is there a better type, or ref for html?
    // property.addProperty("type", "string");
    // } else {
    // property.addProperty("$ref", tref);
    // }
    // }
    // if (e.getMinCardinality() > 0 && property_ == null)
    // required.add(e.getName());
    }
}

Example 22 with SimpleQuantity

use of org.hl7.fhir.dstu2016may.model.SimpleQuantity in project kindling by HL7.

the class OldSpreadsheetParser method processValue.

private DataType processValue(Sheet sheet, int row, String column, String source, ElementDefn e) throws Exception {
    if (Utilities.noString(source))
        return null;
    if (e.getTypes().size() != 1)
        throw new Exception("Unable to process " + column + " unless a single type is specified (types = " + e.typeCode() + ") " + getLocation(row) + ", column = " + column);
    String type = e.typeCode();
    if (definitions != null) {
        if (definitions.getConstraints().containsKey(type))
            type = definitions.getConstraints().get(type).getBaseType();
    } else {
        StructureDefinition sd = context.fetchTypeDefinition(type);
        if (// not loaded yet?
        sd != null)
            type = sd.getType();
        if (type.equals("SimpleQuantity"))
            type = "Quantity";
    }
    if (source.startsWith("{")) {
        JsonParser json = new JsonParser();
        return json.parseType(source, type);
    } else if (source.startsWith("<")) {
        XmlParser xml = new XmlParser();
        return xml.parseType(source, type);
    } else {
        if (source.startsWith("\"") && source.endsWith("\""))
            source = source.substring(1, source.length() - 1);
        if (type.equals("string"))
            return new StringType(source);
        if (type.equals("boolean"))
            return new BooleanType(Boolean.valueOf(source));
        if (type.equals("integer"))
            return new IntegerType(Integer.valueOf(source));
        if (type.equals("integer64"))
            return new Integer64Type(Long.valueOf(source));
        if (type.equals("unsignedInt"))
            return new UnsignedIntType(Integer.valueOf(source));
        if (type.equals("positiveInt"))
            return new PositiveIntType(Integer.valueOf(source));
        if (type.equals("decimal"))
            return new DecimalType(new BigDecimal(source));
        if (type.equals("base64Binary"))
            return new Base64BinaryType(Base64.decode(source.toCharArray()));
        if (type.equals("instant"))
            return new InstantType(source);
        if (type.equals("uri"))
            return new UriType(source);
        if (type.equals("url"))
            return new UrlType(source);
        if (type.equals("canonical"))
            return new CanonicalType(source);
        if (type.equals("date"))
            return new DateType(source);
        if (type.equals("dateTime"))
            return new DateTimeType(source);
        if (type.equals("time"))
            return new TimeType(source);
        if (type.equals("code"))
            return new CodeType(source);
        if (type.equals("oid"))
            return new OidType(source);
        if (type.equals("uuid"))
            return new UuidType(source);
        if (type.equals("id"))
            return new IdType(source);
        if (type.startsWith("Reference(")) {
            Reference r = new Reference();
            r.setReference(source);
            return r;
        }
        if (type.equals("Period")) {
            if (source.contains("->")) {
                String[] parts = source.split("\\-\\>");
                Period p = new Period();
                p.setStartElement(new DateTimeType(parts[0].trim()));
                if (parts.length > 1)
                    p.setEndElement(new DateTimeType(parts[1].trim()));
                return p;
            } else
                throw new Exception("format not understood parsing " + source + " into a period");
        }
        if (type.equals("CodeableConcept")) {
            CodeableConcept cc = new CodeableConcept();
            if (source.contains(":")) {
                String[] parts = source.split("\\:");
                String system = "";
                if (parts[0].equalsIgnoreCase("SCT"))
                    system = "http://snomed.info/sct";
                else if (parts[0].equalsIgnoreCase("LOINC"))
                    system = "http://loinc.org";
                else if (parts[0].equalsIgnoreCase("AMTv2"))
                    system = "http://nehta.gov.au/amtv2";
                else
                    system = "http://hl7.org/fhir/" + parts[0];
                String code = parts[1];
                String display = parts.length > 2 ? parts[2] : null;
                cc.addCoding().setSystem(system).setCode(code).setDisplay(display);
            } else
                throw new Exception("format not understood parsing " + source + " into a codeable concept");
            return cc;
        }
        if (type.equals("Identifier")) {
            Identifier id = new Identifier();
            id.setSystem("urn:ietf:rfc:3986");
            id.setValue(source);
            return id;
        }
        if (type.equals("Quantity")) {
            int s = 0;
            if (source.startsWith("<=") || source.startsWith("=>"))
                s = 2;
            else if (source.startsWith("<") || source.startsWith(">"))
                s = 1;
            int i = s;
            while (i < source.length() && Character.isDigit(source.charAt(i))) i++;
            Quantity q = new Quantity();
            if (s > 0)
                q.setComparator(QuantityComparator.fromCode(source.substring(0, s)));
            if (i > s)
                q.setValue(new BigDecimal(source.substring(s, i)));
            if (i < source.length())
                q.setUnit(source.substring(i).trim());
            return q;
        }
        throw new Exception("Unable to process primitive value '" + source + "' provided for " + column + " - unhandled type " + type + " @ " + getLocation(row));
    }
}

Example 23 with SimpleQuantity

use of org.hl7.fhir.dstu2016may.model.SimpleQuantity in project org.hl7.fhir.core by hapifhir.

the class MedicationAdministration30_40 method convertMedicationAdministrationDosageComponent.

public static org.hl7.fhir.dstu3.model.MedicationAdministration.MedicationAdministrationDosageComponent convertMedicationAdministrationDosageComponent(org.hl7.fhir.r4.model.MedicationAdministration.MedicationAdministrationDosageComponent src) throws FHIRException {
    if (src == null)
        return null;
    org.hl7.fhir.dstu3.model.MedicationAdministration.MedicationAdministrationDosageComponent tgt = new org.hl7.fhir.dstu3.model.MedicationAdministration.MedicationAdministrationDosageComponent();
    ConversionContext30_40.INSTANCE.getVersionConvertor_30_40().copyElement(src, tgt);
    if (src.hasText())
        tgt.setTextElement(String30_40.convertString(src.getTextElement()));
    if (src.hasSite())
        tgt.setSite(CodeableConcept30_40.convertCodeableConcept(src.getSite()));
    if (src.hasRoute())
        tgt.setRoute(CodeableConcept30_40.convertCodeableConcept(src.getRoute()));
    if (src.hasMethod())
        tgt.setMethod(CodeableConcept30_40.convertCodeableConcept(src.getMethod()));
    if (src.hasDose())
        tgt.setDose(SimpleQuantity30_40.convertSimpleQuantity(src.getDose()));
    if (src.hasRate()) {
        if (src.hasRateQuantity()) {
            tgt.setRate(new SimpleQuantity());
            Quantity30_40.copyQuantity(src.getRateQuantity(), tgt.getRateSimpleQuantity());
        } else {
            tgt.setRate(ConversionContext30_40.INSTANCE.getVersionConvertor_30_40().convertType(src.getRate()));
        }
    }
    return tgt;
}

Example 24 with SimpleQuantity

use of org.hl7.fhir.dstu2016may.model.SimpleQuantity in project org.hl7.fhir.core by hapifhir.

the class FluentPathTests method testDecimalRA.

@Test
public void testDecimalRA() throws FileNotFoundException, IOException, FHIRException {
    RiskAssessment r = new RiskAssessment();
    SimpleQuantity sq = new SimpleQuantity();
    sq.setValue(0.2);
    sq.setUnit("%");
    sq.setCode("%");
    sq.setSystem("http://unitsofmeasure.org");
    SimpleQuantity sq1 = new SimpleQuantity();
    sq1.setValue(0.4);
    sq1.setUnit("%");
    sq1.setCode("%");
    sq1.setSystem("http://unitsofmeasure.org");
    r.addPrediction().setProbability(new Range().setLow(sq).setHigh(sq1));
    testBoolean(r, r.getPrediction().get(0).getProbability(), "RiskAssessment.prediction.probabilityRange", "(low.empty() or ((low.code = '%') and (low.system = %ucum))) and (high.empty() or ((high.code = '%') and (high.system = %ucum)))", true);
    testBoolean(r, r.getPrediction().get(0), "RiskAssessment.prediction", "probability is decimal implies probability.as(decimal) <= 100", true);
    r.getPrediction().get(0).setProbability(new DecimalType(80));
    testBoolean(r, r.getPrediction().get(0), "RiskAssessment.prediction", "probability.as(decimal) <= 100", true);
}

Example 25 with SimpleQuantity

use of org.hl7.fhir.dstu2016may.model.SimpleQuantity in project nia-patient-switching-standard-adaptor by NHSDigital.

the class MedicationMapperUtils method buildDosageQuantity.

public static Optional<SimpleQuantity> buildDosageQuantity(PQ quantitySupplied) {
    SimpleQuantity quantity = new SimpleQuantity();
    quantity.setValue(Double.parseDouble(quantitySupplied.getValue()));
    if (quantitySupplied.hasTranslation() && quantitySupplied.getTranslation().get(0).hasOriginalText()) {
        quantity.setUnit(quantitySupplied.getTranslation().get(0).getOriginalText());
    }
    return Optional.of(quantity);
}