use of org.hl7.fhir.dstu2016may.model.UriType in project elexis-server by elexis.
the class ServerCapabilityStatementProvider method getSmartOnFhirCapabilityStatementRestSecurityComponent.
private CapabilityStatementRestSecurityComponent getSmartOnFhirCapabilityStatementRestSecurityComponent(HttpServletRequest theRequest) {
CapabilityStatementRestSecurityComponent csrsc = new CapabilityStatementRestSecurityComponent();
CodeableConcept smartOnFhirConcept = new CodeableConcept();
Coding coding = new Coding();
coding.setSystem("http://hl7.org/fhir/restful-security-service");
coding.setCode("SMART-on-FHIR");
smartOnFhirConcept.addCoding(coding);
smartOnFhirConcept.setText("OAuth2 using SMART-on-FHIR profile (see http://docs.smarthealthit.org)");
Extension oauthExtension = new Extension();
oauthExtension.setUrl("http://fhir-registry.smarthealthit.org/StructureDefinition/oauth-uris");
Extension oauthTokenExtension = new Extension();
oauthTokenExtension.setUrl("token");
oauthTokenExtension.setValue(new UriType(keycloakDeployment.getTokenUrl()));
oauthExtension.getExtension().add(oauthTokenExtension);
// Extension oauthAuthorizeExtension = new Extension();
// oauthAuthorizeExtension.setUrl("authorize");
// oauthAuthorizeExtension.setValue(new UriType(keycloakDeployment.getAuthUrl()));
// oauthExtension.getExtension().add(oauthAuthorizeExtension);
//
// oauthRegisterExtension.setUrl("register");
// oauthRegisterExtension.setValue(new UriType(baseUrl + "/openid/register"));
// oauthExtension.getExtension().add(oauthRegisterExtension);
//
// Extension oauthManageExtension = new Extension();
// oauthManageExtension.setUrl("manage");
// oauthManageExtension.setValue(new UriType(baseUrl + "/openid/manage"));
// oauthExtension.getExtension().add(oauthManageExtension);
csrsc.getService().add(smartOnFhirConcept);
csrsc.getExtension().add(oauthExtension);
return csrsc;
}
use of org.hl7.fhir.dstu2016may.model.UriType in project org.hl7.fhir.core by hapifhir.
the class ClinicalImpression10_30 method convertClinicalImpression.
public static org.hl7.fhir.dstu2.model.ClinicalImpression convertClinicalImpression(org.hl7.fhir.dstu3.model.ClinicalImpression src) throws FHIRException {
if (src == null || src.isEmpty())
return null;
org.hl7.fhir.dstu2.model.ClinicalImpression tgt = new org.hl7.fhir.dstu2.model.ClinicalImpression();
ConversionContext10_30.INSTANCE.getVersionConvertor_10_30().copyDomainResource(src, tgt);
if (src.hasSubject())
tgt.setPatient(Reference10_30.convertReference(src.getSubject()));
if (src.hasAssessor())
tgt.setAssessor(Reference10_30.convertReference(src.getAssessor()));
if (src.hasStatus())
tgt.setStatusElement(convertClinicalImpressionStatus(src.getStatusElement()));
if (src.hasDate())
tgt.setDateElement(DateTime10_30.convertDateTime(src.getDateElement()));
if (src.hasDescriptionElement())
tgt.setDescriptionElement(String10_30.convertString(src.getDescriptionElement()));
if (src.hasPrevious())
tgt.setPrevious(Reference10_30.convertReference(src.getPrevious()));
for (org.hl7.fhir.dstu3.model.Reference t : src.getProblem()) tgt.addProblem(Reference10_30.convertReference(t));
for (UriType t : src.getProtocol()) tgt.setProtocol(t.asStringValue());
if (src.hasSummaryElement())
tgt.setSummaryElement(String10_30.convertString(src.getSummaryElement()));
for (org.hl7.fhir.dstu3.model.ClinicalImpression.ClinicalImpressionFindingComponent t : src.getFinding()) tgt.addFinding(convertClinicalImpressionFindingComponent(t));
if (src.hasText())
tgt.setPrognosis(src.getPrognosisCodeableConceptFirstRep().getText());
for (org.hl7.fhir.dstu3.model.Reference t : src.getAction()) tgt.addAction(Reference10_30.convertReference(t));
return tgt;
}
use of org.hl7.fhir.dstu2016may.model.UriType in project org.hl7.fhir.core by hapifhir.
the class Provenance30_40 method convertProvenanceAgentComponent.
public static org.hl7.fhir.r4.model.Provenance.ProvenanceAgentComponent convertProvenanceAgentComponent(org.hl7.fhir.dstu3.model.Provenance.ProvenanceAgentComponent src) throws FHIRException {
if (src == null)
return null;
org.hl7.fhir.r4.model.Provenance.ProvenanceAgentComponent tgt = new org.hl7.fhir.r4.model.Provenance.ProvenanceAgentComponent();
ConversionContext30_40.INSTANCE.getVersionConvertor_30_40().copyElement(src, tgt);
for (org.hl7.fhir.dstu3.model.CodeableConcept t : src.getRole()) tgt.addRole(CodeableConcept30_40.convertCodeableConcept(t));
if (src.hasWho()) {
Type t = ConversionContext30_40.INSTANCE.getVersionConvertor_30_40().convertType(src.getWho());
if (t instanceof Reference)
tgt.setWho((Reference) t);
if (t instanceof UriType)
tgt.getWho().setReference(t.primitiveValue());
}
if (src.hasOnBehalfOf()) {
Type t = ConversionContext30_40.INSTANCE.getVersionConvertor_30_40().convertType(src.getOnBehalfOf());
if (t instanceof Reference)
tgt.setOnBehalfOf((Reference) t);
if (t instanceof UriType)
tgt.getOnBehalfOf().setReference(t.primitiveValue());
}
return tgt;
}
use of org.hl7.fhir.dstu2016may.model.UriType in project org.hl7.fhir.core by hapifhir.
the class IEEE11073Convertor method generateLoincMdcMap.
private static ConceptMap generateLoincMdcMap(CodeSystem mdc, String dst, String src) throws IOException, FHIRException {
ConceptMap cm = new ConceptMap();
cm.setId("loinc-mdc");
cm.setUrl("http:/???/fhir/ConceptMap/loinc-mdc");
cm.setVersion("[todo]");
cm.setName("LoincMdcCrossMap");
cm.setTitle("Cross Map between LOINC and MDC");
cm.setStatus(PublicationStatus.DRAFT);
cm.setExperimental(true);
cm.setDateElement(new DateTimeType());
cm.setPublisher("HL7, Inc");
ContactDetail cd = cm.addContact();
cd.setName("LOINC + IEEE");
ContactPoint cp = cd.addTelecom();
cp.setSystem(ContactPointSystem.URL);
cp.setValue("http://loinc.org");
cm.setDescription("A Cross Map between the LOINC and MDC Code systems");
cm.setPurpose("To implementers map between medical device codes and LOINC codes");
cm.setCopyright("This content LOINC \u00ae is copyright \u00a9 1995 Regenstrief Institute, Inc. and the LOINC Committee, and available at no cost under the license at http://loinc.org/terms-of-use");
cm.setSource(new UriType("http://loinc.org/vs"));
cm.setTarget(new UriType(MDC_ALL_VALUES));
ConceptMapGroupComponent g = cm.addGroup();
g.setSource("urn:iso:std:iso:11073:10101");
g.setTarget("http://loinc.org");
CSVReader csv = new CSVReader(new FileInputStream(src));
csv.readHeaders();
while (csv.line()) {
SourceElementComponent e = g.addElement();
e.setCode(csv.cell("IEEE_CF_CODE10"));
e.setDisplay(csv.cell("IEEE_DESCRIPTION"));
TargetElementComponent t = e.addTarget();
t.setEquivalence(ConceptMapEquivalence.EQUIVALENT);
t.setCode(csv.cell("LOINC_NUM"));
t.setDisplay(csv.cell("LOINC_LONG_COMMON_NAME"));
}
new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(dst, "conceptmap-" + cm.getId() + ".xml")), cm);
System.out.println("Done");
return cm;
}
use of org.hl7.fhir.dstu2016may.model.UriType in project org.hl7.fhir.core by hapifhir.
the class ISO21090Importer method produceProperties.
private void produceProperties(List<ElementDefinition> elements, String name, List<Property> properties, boolean attrMode, boolean snapshot) throws FHIRFormatError {
for (Property p : properties) {
if (p.isIsattr() == attrMode) {
ElementDefinition ed = new ElementDefinition();
elements.add(ed);
ed.setPath(name + "." + p.getName());
if (p.getType().startsWith("xsd:"))
ToolingExtensions.addStringExtension(ed.addType(), ToolingExtensions.EXT_XML_TYPE, p.getType());
else
ed.addType().setCode(p.getType());
ed.setMin(p.getMin());
ed.setMax(p.getMax() == Integer.MAX_VALUE ? "*" : Integer.toString(p.getMax()));
ed.setDefinition(p.getDoco());
if (p.isIsattr())
ed.addRepresentation(PropertyRepresentation.XMLATTR);
if (p.getBinding() != null)
ed.getBinding().setStrength(BindingStrength.REQUIRED).setValueSet(new UriType("http://hl7.org/fhir/iso21090/ValueSet/" + p.getBinding()));
if (snapshot)
ed.getBase().setPath(ed.getPath()).setMin(ed.getMin()).setMax(ed.getMax());
}
}
}
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