Examples with ActivityDefinition org.hl7.fhir.dstu3.model.ActivityDefinition used on opensource projects

Example 26 with ActivityDefinition

use of org.hl7.fhir.dstu3.model.ActivityDefinition in project cqf-ruler by DBCG.

the class ExpressionEvaluation method getLibraryReferences.

private List<Reference> getLibraryReferences(DomainResource instance, JpaFhirDal jpaFhirDal, RequestDetails theRequest) {
    List<Reference> references = new ArrayList<>();
    if (instance.hasContained()) {
        for (Resource resource : instance.getContained()) {
            if (resource instanceof Library) {
                resource.setId(resource.getIdElement().getIdPart().replace("#", ""));
                jpaFhirDal.update((Library) resource);
            // getLibraryLoader().putLibrary(resource.getIdElement().getIdPart(),
            // getLibraryLoader().toElmLibrary((Library) resource));
            }
        }
    }
    if (instance instanceof ActivityDefinition) {
        references.addAll(((ActivityDefinition) instance).getLibrary());
    } else if (instance instanceof PlanDefinition) {
        references.addAll(((PlanDefinition) instance).getLibrary());
    } else if (instance instanceof Measure) {
        references.addAll(((Measure) instance).getLibrary());
    }
    for (Extension extension : instance.getExtensionsByUrl("http://hl7.org/fhir/StructureDefinition/cqif-library")) {
        Type value = extension.getValue();
        if (value instanceof Reference) {
            references.add((Reference) value);
        } else {
            throw new RuntimeException("Library extension does not have a value of type reference");
        }
    }
    return cleanReferences(references);
}

Example 27 with ActivityDefinition

use of org.hl7.fhir.dstu3.model.ActivityDefinition in project cqf-ruler by DBCG.

the class ActivityDefinitionApplyProvider method resolveProcedureRequest.

private ProcedureRequest resolveProcedureRequest(ActivityDefinition activityDefinition, String patientId, String practitionerId, String organizationId) throws ActivityDefinitionApplyException {
    // status, intent, code, and subject are required
    ProcedureRequest procedureRequest = new ProcedureRequest();
    procedureRequest.setStatus(ProcedureRequest.ProcedureRequestStatus.DRAFT);
    procedureRequest.setIntent(ProcedureRequest.ProcedureRequestIntent.PROPOSAL);
    String patientReferenceString = patientId;
    URI patientIdAsUri = URI.create(patientReferenceString);
    if (!patientIdAsUri.isAbsolute() && patientIdAsUri.getFragment() == null && !patientReferenceString.startsWith("Patient/")) {
        patientReferenceString = "Patient/" + patientId;
    }
    procedureRequest.setSubject(new Reference(patientReferenceString));
    if (practitionerId != null) {
        procedureRequest.setRequester(new ProcedureRequest.ProcedureRequestRequesterComponent().setAgent(new Reference(practitionerId)));
    } else if (organizationId != null) {
        procedureRequest.setRequester(new ProcedureRequest.ProcedureRequestRequesterComponent().setAgent(new Reference(organizationId)));
    }
    if (activityDefinition.hasExtension()) {
        procedureRequest.setExtension(activityDefinition.getExtension());
    }
    if (activityDefinition.hasCode()) {
        procedureRequest.setCode(activityDefinition.getCode());
    } else // code can be set as a dynamicValue
    if (!activityDefinition.hasCode() && !activityDefinition.hasDynamicValue()) {
        throw new ActivityDefinitionApplyException("Missing required code property");
    }
    if (activityDefinition.hasBodySite()) {
        procedureRequest.setBodySite(activityDefinition.getBodySite());
    }
    if (activityDefinition.hasProduct()) {
        throw new ActivityDefinitionApplyException("Product does not map to " + activityDefinition.getKind());
    }
    if (activityDefinition.hasDosage()) {
        throw new ActivityDefinitionApplyException("Dosage does not map to " + activityDefinition.getKind());
    }
    return procedureRequest;
}

Example 28 with ActivityDefinition

use of org.hl7.fhir.dstu3.model.ActivityDefinition in project cqf-ruler by DBCG.

the class ActivityDefinitionApplyProvider method resolveActivityDefinition.

// For library use
public Resource resolveActivityDefinition(ActivityDefinition activityDefinition, String patientId, String practitionerId, String organizationId, RequestDetails theRequest) throws FHIRException {
    Resource result = newResource(activityDefinition.getKind().toCode());
    switch(result.fhirType()) {
        case "ProcedureRequest":
            result = resolveProcedureRequest(activityDefinition, patientId, practitionerId, organizationId);
            break;
        case "MedicationRequest":
            result = resolveMedicationRequest(activityDefinition, patientId);
            break;
        case "SupplyRequest":
            result = resolveSupplyRequest(activityDefinition, practitionerId, organizationId);
            break;
        case "Procedure":
            result = resolveProcedure(activityDefinition, patientId);
            break;
        case "DiagnosticReport":
            result = resolveDiagnosticReport(activityDefinition, patientId);
            break;
        case "Communication":
            result = resolveCommunication(activityDefinition, patientId);
            break;
        case "CommunicationRequest":
            result = resolveCommunicationRequest(activityDefinition, patientId);
            break;
    }
    for (ActivityDefinition.ActivityDefinitionDynamicValueComponent dynamicValue : activityDefinition.getDynamicValue()) {
        if (dynamicValue.getExpression() != null) {
            Boolean aliasedExpression = null;
            if (dynamicValue.hasLanguage()) {
                String language = dynamicValue.getLanguage();
                if (language.equals("text/cql.identifier") || language.equals("text/cql-identifier") || language.equals("text/cql.name") || language.equals("text/cql-name")) {
                    aliasedExpression = true;
                } else {
                    aliasedExpression = false;
                }
            } else {
                aliasedExpression = false;
            }
            /*
				 * TODO: Passing the activityDefinition as context here because that's what will
				 * have the libraries, but perhaps the "context" here should be the result
				 * resource?
				 */
            Object value = expressionEvaluation.evaluateInContext(activityDefinition, dynamicValue.getExpression(), aliasedExpression, patientId, theRequest);
            // TODO need to verify type... yay
            if (value instanceof Boolean) {
                value = new BooleanType((Boolean) value);
            }
            this.modelResolver.setValue(result, dynamicValue.getPath(), value);
        }
    }
    return result;
}

Example 29 with ActivityDefinition

use of org.hl7.fhir.dstu3.model.ActivityDefinition in project cqf-ruler by DBCG.

the class ExpressionEvaluation method getLibraryReferences.

private List<CanonicalType> getLibraryReferences(DomainResource instance, RequestDetails theRequest) {
    List<CanonicalType> references = new ArrayList<>();
    if (instance.hasContained()) {
        for (Resource resource : instance.getContained()) {
            if (resource instanceof Library) {
                resource.setId(resource.getIdElement().getIdPart().replace("#", ""));
                this.jpaFhirDalFactory.create(theRequest).update((Library) resource);
            // getLibraryLoader().putLibrary(resource.getIdElement().getIdPart(),
            // getLibraryLoader().toElmLibrary((Library) resource));
            }
        }
    }
    if (instance instanceof ActivityDefinition) {
        references.addAll(((ActivityDefinition) instance).getLibrary());
    } else if (instance instanceof PlanDefinition) {
        references.addAll(((PlanDefinition) instance).getLibrary());
    } else if (instance instanceof Measure) {
        references.addAll(((Measure) instance).getLibrary());
    }
    for (Extension extension : instance.getExtensionsByUrl("http://hl7.org/fhir/StructureDefinition/cqif-library")) {
        Type value = extension.getValue();
        if (value instanceof CanonicalType) {
            references.add((CanonicalType) value);
        } else {
            throw new RuntimeException("Library extension does not have a value of type reference");
        }
    }
    return cleanReferences(references);
}

Example 30 with ActivityDefinition

use of org.hl7.fhir.dstu3.model.ActivityDefinition in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeActivityDefinitionActivityDefinitionParticipantComponent.

protected void composeActivityDefinitionActivityDefinitionParticipantComponent(Complex parent, String parentType, String name, ActivityDefinition.ActivityDefinitionParticipantComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "participant", name, element, index);
    if (element.hasTypeElement())
        composeEnum(t, "ActivityDefinition", "type", element.getTypeElement(), -1);
    if (element.hasRole())
        composeCodeableConcept(t, "ActivityDefinition", "role", element.getRole(), -1);
}