Examples with DomainResource org.hl7.fhir.dstu3.model.DomainResource used on opensource projects

Example 11 with DomainResource

use of org.hl7.fhir.dstu3.model.DomainResource in project kindling by HL7.

the class ProfileGenerator method addElementConstraint.

/*
   *     // resource
    // domain resource
    for (ElementDefn child : definitions.getBaseResources().get("DomainResource").getRoot().getElements()) 
      defineElement(null, p, p.getSnapshot(), child, r.getRoot().getName()+"."+child.getName(), containedSlices, new ArrayList<ProfileGenerator.SliceHandle>(), SnapShotMode.Resource);

   */
/*
  private String registerMapping(ConformancePackage ap, StructureDefinition p, String m) {
    for (StructureDefinitionMappingComponent map : p.getMapping()) {
      if (map.getUri().equals(m))
        return map.getIdentity();
    }
    StructureDefinitionMappingComponent map = new StructureDefinitionMappingComponent();
    MappingSpace space = definitions.getMapTypes().get(m);
    if (space != null)
      map.setIdentity(space.getId());
    else
      map.setIdentity("m" + Integer.toString(p.getMapping().size()+1));
    map.setUri(m);
    String name = ap.metadata(m+"-name");
    if (Utilities.noString(name) && space != null)
      name = space.getTitle();
    if (!Utilities.noString(name))
      map.setName(name);
    String comments = ap.metadata(m+"-comments");
    if (Utilities.noString(comments) && space != null)
        comments = space.getPreamble();
    if (!Utilities.noString(comments))
      map.setComments(comments);
    return map.getIdentity();
  }
   */
private ElementDefinition addElementConstraint(StructureDefinition sd, ElementDefinition ed) {
    if (!ed.getPath().contains(".") && sd.getKind() == StructureDefinitionKind.RESOURCE)
        return ed;
    if (hasSystemType(ed))
        return ed;
    if (isResource(ed))
        return ed;
    if (hasConstraint(ed, "ele-1"))
        return ed;
    ElementDefinitionConstraintComponent inv = ed.addConstraint();
    inv.setKey("ele-1");
    inv.setSeverity(ConstraintSeverity.ERROR);
    inv.setHuman("All FHIR elements must have a @value or children");
    inv.setExpression("hasValue() or (children().count() > id.count())");
    inv.setXpath("@value|f:*|h:div");
    inv.setSource("http://hl7.org/fhir/StructureDefinition/Element");
    return ed;
}

Example 12 with DomainResource

use of org.hl7.fhir.dstu3.model.DomainResource in project cqf-ruler by DBCG.

the class PlanDefinitionApplyProviderIT method testPlanDefinitionApplyFormerSmoker.

@Test
public void testPlanDefinitionApplyFormerSmoker() throws Exception {
    DomainResource plandefinition = (DomainResource) planDefinitions.get("lcs-cds-patient-view");
    // Patient First
    uploadTests("test/plandefinition/LungCancerScreening/Former-Smoker/Patient");
    Map<String, IBaseResource> resources = uploadTests("test/plandefinition/LungCancerScreening/Former-Smoker");
    IBaseResource patient = resources.get("Former-Smoker");
    Object isFormerSmoker = planDefinitionApplyProvider.applyPlanDefinition(new SystemRequestDetails(), plandefinition.getIdElement(), patient.getIdElement().getIdPart(), null, null, null, null, null, null, null, null);
    assertTrue(isFormerSmoker instanceof CarePlan);
}

Example 13 with DomainResource

use of org.hl7.fhir.dstu3.model.DomainResource in project cqf-ruler by DBCG.

the class ExpressionEvaluation method setupContext.

private Context setupContext(DomainResource instance, String cql, String patientId, Boolean aliasedExpression, RequestDetails theRequest) {
    JpaFhirDal jpaFhirDal = jpaFhirDalFactory.create(theRequest);
    List<CanonicalType> libraries = getLibraryReferences(instance, theRequest);
    String fhirVersion = this.fhirContext.getVersion().getVersion().getFhirVersionString();
    // Remove LocalLibrary from cache first...
    VersionedIdentifier localLibraryIdentifier = new VersionedIdentifier().withId("LocalLibrary");
    globalLibraryCache.remove(localLibraryIdentifier);
    // temporary LibraryLoader to resolve library dependencies when building
    // includes
    LibraryLoader tempLibraryLoader = libraryLoaderFactory.create(new ArrayList<LibraryContentProvider>(Arrays.asList(jpaLibraryContentProviderFactory.create(theRequest))));
    String source = "";
    if (aliasedExpression) {
        if (libraries.size() != 1) {
            throw new RuntimeException("If an aliased expression is provided, there must be exactly one primary Library");
        }
        VersionedIdentifier vi = getVersionedIdentifierFromCanonical(libraries.get(0));
        // Still not the best way to build include, but at least checks dal for an
        // existing library
        // Check if id works for LibraryRetrieval
        org.cqframework.cql.elm.execution.Library executionLibrary = null;
        try {
            executionLibrary = tempLibraryLoader.load(vi);
        } catch (Exception e) {
        // log error
        }
        if (executionLibrary == null) {
            Library library = (Library) jpaFhirDal.read(new IdType("Library", Canonicals.getIdPart(libraries.get(0))));
            vi.setId(library.getName());
            if (library.getVersion() != null) {
                vi.setVersion(library.getVersion());
            }
        }
        source = String.format("library LocalLibrary using FHIR version '" + fhirVersion + "' include FHIRHelpers version '" + fhirVersion + "' called FHIRHelpers %s parameter %s %s parameter \"%%context\" %s define Expression: %s", buildIncludes(tempLibraryLoader, jpaFhirDal, libraries, theRequest), instance.fhirType(), instance.fhirType(), instance.fhirType(), vi.getId() + ".\"" + cql + "\"");
    } else {
        source = String.format("library LocalLibrary using FHIR version '" + fhirVersion + "' include FHIRHelpers version '" + fhirVersion + "' called FHIRHelpers %s parameter %s %s parameter \"%%context\" %s define Expression: %s", buildIncludes(tempLibraryLoader, jpaFhirDal, libraries, theRequest), instance.fhirType(), instance.fhirType(), instance.fhirType(), cql);
    }
    LibraryLoader libraryLoader = libraryLoaderFactory.create(new ArrayList<LibraryContentProvider>(Arrays.asList(jpaLibraryContentProviderFactory.create(theRequest), new InMemoryLibraryContentProvider(Arrays.asList(source)))));
    // resolve execution context
    return setupContext(instance, patientId, libraryLoader, theRequest);
}

Example 14 with DomainResource

use of org.hl7.fhir.dstu3.model.DomainResource in project cqf-ruler by DBCG.

the class PlanDefinitionApplyProviderIT method testPlanDefinitionApplyRec10NoScreenings.

@Test
public void testPlanDefinitionApplyRec10NoScreenings() throws Exception {
    DomainResource plandefinition = (DomainResource) planDefinitions.get("opioidcds-10");
    // Patient First
    uploadTests("test/plandefinition/Rec10/Patient");
    Map<String, IBaseResource> resources = uploadTests("test/plandefinition/Rec10");
    IBaseResource patient = resources.get("example-rec-10-no-screenings");
    Object recommendation = planDefinitionApplyProvider.applyPlanDefinition(new SystemRequestDetails(), plandefinition.getIdElement(), patient.getIdElement().getIdPart(), null, null, null, null, null, null, null, null);
    assertTrue(recommendation instanceof CarePlan);
}

Example 15 with DomainResource

use of org.hl7.fhir.dstu3.model.DomainResource in project cqf-ruler by DBCG.

the class ExpressionEvaluationIT method testOpioidCdsPlanDefinitionDomain.

@Test
public void testOpioidCdsPlanDefinitionDomain() throws Exception {
    DomainResource plandefinition = (DomainResource) planDefinitions.get("opioidcds-10");
    // Patient First
    uploadTests("test/plandefinition/Rec10/Patient");
    Map<String, IBaseResource> resources = uploadTests("test/plandefinition/Rec10");
    IBaseResource patient = resources.get("example-rec-10-no-screenings");
    Object isFormerSmoker = expressionEvaluation.evaluateInContext(plandefinition, "true", false, patient.getIdElement().getIdPart(), new SystemRequestDetails());
    assertTrue(isFormerSmoker instanceof Boolean);
    assertTrue(((Boolean) isFormerSmoker).booleanValue());
}