Examples with ListResource org.hl7.fhir.dstu3.model.ListResource used on opensource projects

Example 46 with ListResource

use of org.hl7.fhir.dstu3.model.ListResource in project org.hl7.fhir.core by hapifhir.

the class ArgonautConverter method processImmunizationsSection.

private void processImmunizationsSection(CDAUtilities cda, Convert convert, Element section, Context context) throws Exception {
    scanSection("Immunizations", section);
    ListResource list = new ListResource();
    list.setId(context.getBaseId() + "-list-immunizations");
    list.setUserData("profile", "http://hl7.org/fhir/StructureDefinition/list-daf-dafimmunizationlist");
    list.setSubject(context.getSubjectRef());
    list.setCode(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(section, "code")), null));
    list.setTitle(cda.getChild(section, "title").getTextContent());
    list.setStatus(ListStatus.CURRENT);
    list.setMode(ListMode.SNAPSHOT);
    list.setDateElement(context.getNow());
    list.setSource(context.getAuthorRef());
    buildNarrative(list, cda.getChild(section, "text"));
    int i = 0;
    for (Element c : cda.getChildren(section, "entry")) {
        // allergy problem act
        Element sa = cda.getChild(c, "substanceAdministration");
        Immunization imm = new Immunization();
        imm.setId(context.getBaseId() + "-immunization-" + i);
        imm.setUserData("profile", "http://hl7.org/fhir/StructureDefinition/immunization-daf-dafimmunization");
        i++;
        imm.setPatient(context.getSubjectRef());
        imm.setEncounter(new Reference().setReference("Encounter/" + context.getEncounter().getId()));
        imm.setNotGiven("true".equals(sa.getAttribute("negationInd")));
        imm.setStatus(convertImmunizationStatus(cda.getChild(sa, "statusCode")));
        boolean found = false;
        for (Element e : cda.getChildren(sa, "id")) {
            Identifier id = convert.makeIdentifierFromII(e);
            imm.getIdentifier().add(id);
        }
        if (!found) {
            list.addEntry().setItem(new Reference().setReference("Immunization/" + imm.getId()));
            imm.setDateElement(convert.makeDateTimeFromTS(cda.getChild(cda.getChild(sa, "effectiveTime"), "low")));
            if (imm.getNotGiven()) {
                Element reason = cda.getChild(cda.getChildByAttribute(sa, "entryRelationship", "typeCode", "RSON"), "observation");
                imm.setExplanation(new ImmunizationExplanationComponent());
                imm.getExplanation().addReasonNotGiven(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(reason, "code")), null));
            }
            Element mm = cda.getChild(cda.getChild(cda.getChild(sa, "consumable"), "manufacturedProduct"), "manufacturedMaterial");
            imm.setVaccineCode(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(mm, "code")), null));
            imm.setRoute(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(sa, "routeCode")), null));
            if (cda.getChild(mm, "lotNumberText") != null)
                imm.setLotNumber(cda.getChild(mm, "lotNumberText").getTextContent());
            Element mr = cda.getChild(cda.getChild(cda.getChild(sa, "consumable"), "manufacturedProduct"), "manufacturerOrganization");
            if (mr != null)
                imm.setManufacturer(new Reference().setDisplay(cda.getChild(mr, "name").getTextContent()));
            // the problem with this is that you can't have just a dose sequence number
            // Element subject = cda.getChild(cda.getChildByAttribute(sa, "entryRelationship", "typeCode", "SUBJ"), "observation");
            // if (subject != null)
            // imm.addVaccinationProtocol().setDoseSequence(Integer.parseInt(cda.getChild(subject, "value").getAttribute("value")));
            boolean hasprf = false;
            for (Element e : cda.getChildren(sa, "performer")) {
                if (imm.hasPractitioner())
                    throw new Error("additional performer discovered");
                Practitioner p = processPerformer(cda, convert, context, e, "assignedEntity", "assignedPerson");
                Reference ref = new Reference().setReference("Practitioner/" + p.getId()).setDisplay(p.getUserString("display"));
                imm.addPractitioner().setActor(ref).setRole(new org.hl7.fhir.dstu3.model.CodeableConcept().addCoding(new Coding().setSystem("http://hl7.org/fhir/v2/0443").setCode("AP")));
                hasprf = true;
            }
            imm.setPrimarySource(hasprf);
            saveResource(imm);
        }
    }
    saveResource(list);
}

Example 47 with ListResource

use of org.hl7.fhir.dstu3.model.ListResource in project org.hl7.fhir.core by hapifhir.

the class ArgonautConverter method processProcedureSection.

private void processProcedureSection(CDAUtilities cda, Convert convert, Element sect, Context context) throws Exception {
    scanSection("Procedures", sect);
    ListResource list = new ListResource();
    list.setId(context.getBaseId() + "-list-procedures");
    // list.setUserData("profile", "") none?
    list.setSubject(context.getSubjectRef());
    list.setCode(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(sect, "code")), null));
    list.setTitle(cda.getChild(sect, "title").getTextContent());
    list.setStatus(ListStatus.CURRENT);
    list.setMode(ListMode.SNAPSHOT);
    list.setDateElement(context.getNow());
    list.setSource(context.getAuthorRef());
    buildNarrative(list, cda.getChild(sect, "text"));
    int i = 0;
    for (Element c : cda.getChildren(sect, "entry")) {
        Element p = cda.getChild(c, "procedure");
        Procedure proc = new Procedure();
        proc.setId(context.getBaseId() + "-procedure-" + i);
        proc.setUserData("profile", "http://hl7.org/fhir/StructureDefinition/procedure-daf-dafprocedure");
        i++;
        proc.setSubject(context.getSubjectRef());
        proc.setContext(new Reference().setReference("Encounter/" + context.getEncounter().getId()));
        list.addEntry().setItem(new Reference().setReference("Procedure/" + proc.getId()));
        proc.setCode(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(p, "code")), null));
        recordProcedureCode(proc.getCode());
        for (Element e : cda.getChildren(p, "id")) proc.getIdentifier().add(convert.makeIdentifierFromII(e));
        proc.setStatus(determineProcedureStatus(cda.getChild(p, "statusCode")));
        buildNarrative(proc, cda.getChild(p, "text"));
        proc.setPerformed(convert.makeDateTimeFromTS(cda.getChild(p, "effectiveTime")));
        for (Element e : cda.getChildren(p, "performer")) {
            ProcedurePerformerComponent part = proc.addPerformer();
            Practitioner pp = processPerformer(cda, convert, context, e, "assignedEntity", "assignedPerson");
            Reference ref = new Reference().setReference("Practitioner/" + pp.getId()).setDisplay(pp.getUserString("display"));
            part.setActor(ref);
        }
        saveResource(proc);
    }
    saveResource(list);
}

Example 48 with ListResource

use of org.hl7.fhir.dstu3.model.ListResource in project org.hl7.fhir.core by hapifhir.

the class CCDAConverter method addItemToList.

protected ListEntryComponent addItemToList(ListResource list, DomainResource ai) throws Exception {
    list.getContained().add(ai);
    String n = nextRef();
    ai.setId(n);
    ListEntryComponent item = new ListResource.ListEntryComponent();
    list.getEntry().add(item);
    item.setItem(Factory.makeReference("#" + n));
    return item;
}

Example 49 with ListResource

use of org.hl7.fhir.dstu3.model.ListResource in project org.hl7.fhir.core by hapifhir.

the class CCDAConverter method processSocialHistorySection.

protected SectionComponent processSocialHistorySection(Element section) throws Exception {
    ListResource list = new ListResource();
    for (Element entry : cda.getChildren(section, "entry")) {
        Element observation = cda.getlastChild(entry);
        if (cda.hasTemplateId(observation, "2.16.840.1.113883.10.20.22.4.38")) {
            processSocialObservation(list, observation, SocialHistoryType.SocialHistory);
        } else if (cda.hasTemplateId(observation, "2.16.840.1.113883.10.20.15.3.8")) {
            processSocialObservation(list, observation, SocialHistoryType.Pregnancy);
        } else if (cda.hasTemplateId(observation, "2.16.840.1.113883.10.20.22.4.78")) {
            processSocialObservation(list, observation, SocialHistoryType.SmokingStatus);
        } else if (cda.hasTemplateId(observation, "2.16.840.1.113883.10.20.22.4.85")) {
            processSocialObservation(list, observation, SocialHistoryType.TobaccoUse);
        } else
            throw new Exception("Unhandled Section template ids: " + cda.showTemplateIds(observation));
    }
    // todo: text
    SectionComponent s = new Composition.SectionComponent();
    s.setCode(convert.makeCodeableConceptFromCD(cda.getChild(section, "code")));
    // todo: check subject
    s.addEntry(Factory.makeReference(addReference(list, "Procedures", makeUUIDReference())));
    return s;
}

Example 50 with ListResource

use of org.hl7.fhir.dstu3.model.ListResource in project org.hl7.fhir.core by hapifhir.

the class CCDAConverter method processProceduresSection.

protected SectionComponent processProceduresSection(Element section) throws Exception {
    ListResource list = new ListResource();
    for (Element entry : cda.getChildren(section, "entry")) {
        Element procedure = cda.getlastChild(entry);
        if (cda.hasTemplateId(procedure, "2.16.840.1.113883.10.20.22.4.14")) {
            processProcedure(list, procedure, ProcedureType.Procedure);
        } else if (cda.hasTemplateId(procedure, "2.16.840.1.113883.10.20.22.4.13")) {
            processProcedure(list, procedure, ProcedureType.Observation);
        } else if (cda.hasTemplateId(procedure, "2.16.840.1.113883.10.20.22.4.12")) {
            processProcedure(list, procedure, ProcedureType.Act);
        } else
            throw new Exception("Unhandled Section template ids: " + cda.showTemplateIds(procedure));
    }
    // todo: text
    SectionComponent s = new Composition.SectionComponent();
    s.setCode(convert.makeCodeableConceptFromCD(cda.getChild(section, "code")));
    // todo: check subject
    s.addEntry(Factory.makeReference(addReference(list, "Procedures", makeUUIDReference())));
    return s;
}