Examples with ListResource org.hl7.fhir.dstu3.model.ListResource used on opensource projects

Example 36 with ListResource

use of org.hl7.fhir.dstu3.model.ListResource in project integration-adaptor-111 by nhsconnect.

the class EncounterReportBundleService method createEncounterBundle.

public Bundle createEncounterBundle(POCDMT000002UK01ClinicalDocument1 clinicalDocument, ItkReportHeader header, String messageId) throws XmlException {
    Bundle bundle = createBundle(clinicalDocument);
    MessageHeader messageHeader = messageHeaderService.createMessageHeader(header, messageId, clinicalDocument.getEffectiveTime().getValue());
    List<HealthcareService> healthcareServiceList = healthcareServiceMapper.mapHealthcareService(clinicalDocument);
    List<PractitionerRole> authorPractitionerRoles = practitionerRoleMapper.mapAuthorRoles(clinicalDocument.getAuthorArray());
    Optional<PractitionerRole> responsibleParty = practitionerRoleMapper.mapResponsibleParty(clinicalDocument);
    Encounter encounter = encounterMapper.mapEncounter(clinicalDocument, authorPractitionerRoles, responsibleParty, messageHeader.getEvent());
    Consent consent = consentMapper.mapConsent(clinicalDocument, encounter);
    List<QuestionnaireResponse> questionnaireResponseList = pathwayUtil.getQuestionnaireResponses(clinicalDocument, encounter.getSubject(), resourceUtil.createReference(encounter));
    Condition condition = conditionMapper.mapCondition(clinicalDocument, encounter, questionnaireResponseList);
    List<CarePlan> carePlans = carePlanMapper.mapCarePlan(clinicalDocument, encounter, condition);
    Device device = deviceMapper.mapDevice();
    ReferralRequest referralRequest = referralRequestMapper.mapReferralRequest(clinicalDocument, encounter, healthcareServiceList, resourceUtil.createReference(condition), resourceUtil.createReference(device));
    Composition composition = compositionMapper.mapComposition(clinicalDocument, encounter, carePlans, questionnaireResponseList, referralRequest, authorPractitionerRoles);
    List<Observation> observations = observationMapper.mapObservations(clinicalDocument, encounter);
    RelatedPerson relatedPerson = relatedPersonMapper.createEmergencyContactRelatedPerson(clinicalDocument, encounter);
    addMessageHeader(bundle, messageHeader);
    addEncounter(bundle, encounter);
    addServiceProvider(bundle, encounter);
    addParticipants(bundle, encounter);
    addLocation(bundle, encounter);
    addSubject(bundle, encounter);
    addHealthcareService(bundle, healthcareServiceList);
    addIncomingReferral(bundle, referralRequest);
    addAppointment(bundle, encounter);
    addEntry(bundle, composition);
    addCarePlan(bundle, carePlans);
    addEntry(bundle, consent);
    addEntry(bundle, condition);
    addQuestionnaireResponses(bundle, questionnaireResponseList);
    addObservations(bundle, observations);
    addPractitionerRoles(bundle, authorPractitionerRoles, responsibleParty);
    addRelatedPerson(bundle, relatedPerson);
    addEntry(bundle, device);
    ListResource listResource = getReferenceFromBundle(bundle, clinicalDocument, encounter, device);
    addEntry(bundle, listResource);
    return bundle;
}

Example 37 with ListResource

use of org.hl7.fhir.dstu3.model.ListResource in project integration-adaptor-111 by nhsconnect.

the class ListMapper method mapList.

public ListResource mapList(POCDMT000002UK01ClinicalDocument1 clinicalDocument, Encounter encounter, Collection<Resource> resourcesCreated, Reference deviceRef) {
    ListResource listResource = new ListResource();
    listResource.setIdElement(resourceUtil.newRandomUuid());
    Identifier docIdentifier = new Identifier();
    docIdentifier.setUse(USUAL);
    docIdentifier.setValue(clinicalDocument.getSetId().getRoot());
    listResource.setStatus(CURRENT).setTitle(LIST_TITLE).setMode(WORKING).setCode(createCodeConcept()).setSubject(encounter.getSubject()).setSourceTarget(encounter.getSubjectTarget()).setEncounter(resourceUtil.createReference(encounter)).setEncounterTarget(encounter).setDateElement(DateUtil.parse(clinicalDocument.getEffectiveTime().getValue())).setSource(deviceRef).setOrderedBy(createOrderByConcept());
    resourcesCreated.stream().sorted(resourceDateComparator).filter(it -> TRIAGE_RESOURCES.contains(it.getResourceType()) && it.hasId()).map(resourceUtil::createReference).map(ListResource.ListEntryComponent::new).forEach(listResource::addEntry);
    return listResource;
}

Example 38 with ListResource

use of org.hl7.fhir.dstu3.model.ListResource in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluation method addPopulationCriteriaReport.

private void addPopulationCriteriaReport(MeasureReport report, MeasureReport.MeasureReportGroupComponent reportGroup, Measure.MeasureGroupPopulationComponent populationCriteria, int populationCount, Iterable<Patient> patientPopulation) {
    if (populationCriteria != null) {
        MeasureReport.MeasureReportGroupPopulationComponent populationReport = new MeasureReport.MeasureReportGroupPopulationComponent();
        populationReport.setCode(populationCriteria.getCode());
        if (report.getType() == MeasureReport.MeasureReportType.SUBJECTLIST && patientPopulation != null) {
            ListResource subjectList = new ListResource();
            subjectList.setId(UUID.randomUUID().toString());
            populationReport.setSubjectResults(new Reference().setReference("#" + subjectList.getId()));
            for (Patient patient : patientPopulation) {
                ListResource.ListEntryComponent entry = new ListResource.ListEntryComponent().setItem(new Reference().setReference(patient.getIdElement().getIdPart().startsWith("Patient/") ? patient.getIdElement().getIdPart() : String.format("Patient/%s", patient.getIdElement().getIdPart())).setDisplay(patient.getNameFirstRep().getNameAsSingleString()));
                subjectList.addEntry(entry);
            }
            report.addContained(subjectList);
        }
        populationReport.setCount(populationCount);
        reportGroup.addPopulation(populationReport);
    }
}

Example 39 with ListResource

use of org.hl7.fhir.dstu3.model.ListResource in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method measure_patient_list_report_generated.

@Test
public void measure_patient_list_report_generated() throws Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient1 = getPatient("1", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient1);
    Patient patient2 = getPatient("2", AdministrativeGender.FEMALE, "1970-10-10");
    mockFhirResourceRetrieval(patient2);
    List<String> patientIds = new ArrayList<>();
    patientIds.add(patient1.getId());
    patientIds.add(patient2.getId());
    Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.cql", "text/cql", "cql/fhir-measure/test-dummy-populations.xml", "application/elm+xml");
    Measure measure = getCohortMeasure("CohortMeasureName", library, INITIAL_POPULATION);
    MeasureReport report = evaluator.evaluatePatientListMeasure(patientIds, measure, null, null);
    assertNotNull(report);
    List<ListResource.ListEntryComponent> patientList = ((ListResource) report.getContained().get(0)).getEntry();
    List<String> actualPatientIds = patientList.stream().map(a -> StringUtils.removeStart(a.getItem().getReference(), "Patient/")).collect(Collectors.toList());
    assertThat(actualPatientIds, Matchers.containsInAnyOrder(patient1.getId(), patient2.getId()));
}

Example 40 with ListResource

use of org.hl7.fhir.dstu3.model.ListResource in project kindling by HL7.

the class Regenerator method generateOperations.

public void generateOperations(ResourceDefn r, String root) throws IOException {
    ListResource list = new ListResource();
    list.setId(r.getName() + "-operations");
    list.setStatus(ListStatus.CURRENT);
    list.setMode(ListMode.WORKING);
    for (Operation op : r.getOperations()) {
        ListResourceEntryComponent li = list.addEntry();
        li.getItem().setReference("OperationDefinition/" + r.getName() + "-" + op.getName());
    }
    File fn = new File(Utilities.path(root, list.fhirType().toLowerCase() + "-" + list.getId() + ".gen.xml"));
    new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(fn), list);
    fn.setLastModified(r.getTimestamp());
    for (Operation op : r.getOperations()) {
        generateOperation(root, r, op);
    }
}