Examples with ListResource org.hl7.fhir.dstu3.model.ListResource used on opensource projects

Example 41 with ListResource

use of org.hl7.fhir.dstu3.model.ListResource in project kindling by HL7.

the class ResourceParser method parseExamples.

private void parseExamples(ResourceDefn r, String n, String t) throws FHIRException, Exception {
    ListResource list = (ListResource) parseXml("list-" + t + "-examples.xml");
    for (ListResourceEntryComponent le : list.getEntry()) {
        boolean reg = le.hasExtension(BuildExtensions.EXT_NOT_REGISTERED) ? !BuildExtensions.readBoolExtension(le, BuildExtensions.EXT_NOT_REGISTERED) : true;
        ExampleType type = ExampleType.XmlFile;
        if (le.getFlag().hasCoding(BuildExtensions.EXT_EXAMPLE_TYPE, "container")) {
            type = ExampleType.Container;
        } else if (le.getFlag().hasCoding(BuildExtensions.EXT_EXAMPLE_TYPE, "csv")) {
            type = ExampleType.CsvFile;
        } else if (le.getFlag().hasCoding(BuildExtensions.EXT_EXAMPLE_TYPE, "tool")) {
            type = ExampleType.Tool;
        }
        String id = le.getItem().getReference().substring(le.getItem().getReference().lastIndexOf("/") + 1);
        String ig = le.getExtensionString(BuildExtensions.EXT_IG);
        CSFile path = Utilities.noString(ig) ? new CSFile(Utilities.path(folder, le.getExtensionString(BuildExtensions.EXT_TITLE) + ".xml")) : new CSFile(Utilities.path(rootFolder(), "guides", ig, le.getExtensionString(BuildExtensions.EXT_TITLE) + "." + ext(type)));
        Example ex = new Example(le.getItem().getDisplay(), id, le.getExtensionString(BuildExtensions.EXT_DESCRIPTION), path, reg, type, false);
        r.getExamples().add(ex);
    }
}

Example 42 with ListResource

use of org.hl7.fhir.dstu3.model.ListResource in project kindling by HL7.

the class ResourceParser method parseOperations.

private void parseOperations(ResourceDefn r, String n, String t) throws FHIRException, Exception {
    ListResource list = (ListResource) parseXml("list-" + t + "-operations.xml");
    for (ListResourceEntryComponent le : list.getEntry()) {
        String id = le.getItem().getReference().substring(le.getItem().getReference().indexOf("/") + 1);
        OperationDefinition opd = (OperationDefinition) parseXml("operationdefinition-" + id + ".xml");
        opd.setVersion(version);
        r.getOperations().add(convertOperation(opd));
    }
}

Example 43 with ListResource

use of org.hl7.fhir.dstu3.model.ListResource in project kindling by HL7.

the class SpreadSheetCreator method addExamples.

private void addExamples(XSSFWorkbook excel) throws FHIRFormatError, FileNotFoundException, IOException {
    ListResource list = (ListResource) parseXml(fnExamples());
    list.setText(null);
    XSSFSheet sheet = excel.createSheet(SN_EXAMPLES);
    addExampleColumns(sheet);
    int rowCount = 0;
    for (ListResourceEntryComponent li : list.getEntry()) {
        rowCount++;
        addExample(sheet, li, rowCount);
    }
}

Example 44 with ListResource

use of org.hl7.fhir.dstu3.model.ListResource in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeListResource.

protected void composeListResource(Complex parent, String parentType, String name, ListResource element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeDomainResource(t, "List", name, element, index);
    for (int i = 0; i < element.getIdentifier().size(); i++) composeIdentifier(t, "List", "identifier", element.getIdentifier().get(i), i);
    if (element.hasStatusElement())
        composeEnum(t, "List", "status", element.getStatusElement(), -1);
    if (element.hasModeElement())
        composeEnum(t, "List", "mode", element.getModeElement(), -1);
    if (element.hasTitleElement())
        composeString(t, "List", "title", element.getTitleElement(), -1);
    if (element.hasCode())
        composeCodeableConcept(t, "List", "code", element.getCode(), -1);
    if (element.hasSubject())
        composeReference(t, "List", "subject", element.getSubject(), -1);
    if (element.hasEncounter())
        composeReference(t, "List", "encounter", element.getEncounter(), -1);
    if (element.hasDateElement())
        composeDateTime(t, "List", "date", element.getDateElement(), -1);
    if (element.hasSource())
        composeReference(t, "List", "source", element.getSource(), -1);
    if (element.hasOrderedBy())
        composeCodeableConcept(t, "List", "orderedBy", element.getOrderedBy(), -1);
    for (int i = 0; i < element.getNote().size(); i++) composeAnnotation(t, "List", "note", element.getNote().get(i), i);
    for (int i = 0; i < element.getEntry().size(); i++) composeListResourceListEntryComponent(t, "List", "entry", element.getEntry().get(i), i);
    if (element.hasEmptyReason())
        composeCodeableConcept(t, "List", "emptyReason", element.getEmptyReason(), -1);
}

Example 45 with ListResource

use of org.hl7.fhir.dstu3.model.ListResource in project org.hl7.fhir.core by hapifhir.

the class ArgonautConverter method processAllergiesSection.

private void processAllergiesSection(CDAUtilities cda, Convert convert, Element section, Context context) throws Exception {
    scanSection("Allergies", section);
    ListResource list = new ListResource();
    list.setId(context.getBaseId() + "-list-allergies");
    list.setUserData("profile", "http://hl7.org/fhir/StructureDefinition/list-daf-dafallergylist");
    list.setSubject(context.getSubjectRef());
    list.setCode(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(section, "code")), null));
    list.setTitle(cda.getChild(section, "title").getTextContent());
    list.setStatus(ListStatus.CURRENT);
    list.setDateElement(context.getNow());
    list.setSource(context.getAuthorRef());
    list.setMode(ListMode.SNAPSHOT);
    buildNarrative(list, cda.getChild(section, "text"));
    int i = 0;
    for (Element c : cda.getChildren(section, "entry")) {
        // allergy problem act
        Element apa = cda.getChild(c, "act");
        AllergyIntolerance ai = new AllergyIntolerance();
        ai.setId(context.getBaseId() + "-allergy-" + i);
        ai.setUserData("profile", "http://hl7.org/fhir/StructureDefinition/allergyintolerance-daf-dafallergyintolerance");
        i++;
        ai.setPatient(context.getSubjectRef());
        ai.setAssertedDateElement(convert.makeDateTimeFromTS(cda.getChild(cda.getChild(apa, "effectiveTime"), "low")));
        boolean found = false;
        for (Element e : cda.getChildren(apa, "id")) {
            Identifier id = convert.makeIdentifierFromII(e);
            ai.getIdentifier().add(id);
        }
        if (!found) {
            list.addEntry().setItem(new Reference().setReference("AllergyIntolerance/" + ai.getId()));
            // allergy observation
            Element ao = cda.getChild(cda.getChild(apa, "entryRelationship"), "observation");
            if (!cda.getChild(ao, "value").getAttribute("code").equals("419511003"))
                throw new Error("unexpected code");
            // nothing....
            // no allergy status observation
            List<Element> reactions = cda.getChildren(ao, "entryRelationship");
            Element pe = cda.getChild(cda.getChild(cda.getChild(ao, "participant"), "participantRole"), "playingEntity");
            Element pec = cda.getChild(pe, "code");
            if (pec == null || !Utilities.noString(pec.getAttribute("nullFlavor"))) {
                String n = cda.getChild(pe, "name").getTextContent();
                // if (n.contains("No Known Drug Allergies") && reactions.isEmpty())
                // ai.setSubstance(new CodeableConcept().setText(n)); // todo: what do with this?
                // else
                ai.setCode(new CodeableConcept().setText(n));
            } else
                ai.setCode(inspectCode(convert.makeCodeableConceptFromCD(pec), null));
            recordAllergyCode(ai.getCode());
            if (!reactions.isEmpty()) {
                AllergyIntoleranceReactionComponent aie = ai.addReaction();
                for (Element er : reactions) {
                    Element ro = cda.getChild(er, "observation");
                    aie.addManifestation(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(ro, "value")), null));
                }
            }
            saveResource(ai);
        }
    }
    saveResource(list);
}