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Example 66 with ResourceType

use of org.hl7.fhir.dstu3.model.ResourceType in project gpconnect-demonstrator by nhsconnect.

the class LocationResourceProvider method locationDetailsToLocation.

/**
 * convert locationDetails to fhir resource
 * @param locationDetails
 * @return Location resource
 */
private Location locationDetailsToLocation(LocationDetails locationDetails) {
    Location location = new Location();
    String resourceId = String.valueOf(locationDetails.getId());
    String versionId = String.valueOf(locationDetails.getLastUpdated().getTime());
    String resourceType = location.getResourceType().toString();
    IdType id = new IdType(resourceType, resourceId, versionId);
    location.setId(id);
    location.getMeta().setVersionId(versionId);
    location.getMeta().setLastUpdated(locationDetails.getLastUpdated());
    location.getMeta().addProfile(SystemURL.SD_GPC_LOCATION);
    location.setName(locationDetails.getName());
    // #207 no site code
    // location.setIdentifier(Collections.singletonList(new Identifier().setSystem(SystemURL.ID_ODS_SITE_CODE).setValue(locationDetails.getSiteOdsCode())));
    // #246 remove type element
    // Coding locationCommTypeCode = new Coding();
    // locationCommTypeCode.setCode("COMM");
    // locationCommTypeCode.setSystem(SystemURL.VS_CC_SER_DEL_LOCROLETYPE);
    // locationCommTypeCode.setDisplay("Community Location");
    // 
    // Coding locationGachTypeCode = new Coding();
    // locationGachTypeCode.setCode("GACH");
    // locationGachTypeCode.setSystem(SystemURL.VS_CC_SER_DEL_LOCROLETYPE);
    // locationGachTypeCode.setDisplay("Hospitals; General Acute Care Hospital");
    // 
    // @SuppressWarnings("deprecation")
    // CodeableConcept locationType = new CodeableConcept();
    // locationType.addCoding(locationCommTypeCode);
    // locationType.addCoding(locationGachTypeCode);
    // location.setType(locationType);
    Organization orgz = FindOrganization(locationDetails.getOrgOdsCode());
    if (orgz != null) {
        Reference mngOrg = new Reference();
        mngOrg.setReference(orgz.getId());
        // #246 remove display element
        // mngOrg.setDisplay(orgz.getName());
        location.setManagingOrganization(mngOrg);
    }
    EnumSet<LocationStatus> statusList = EnumSet.allOf(LocationStatus.class);
    LocationStatus locationStatus = null;
    String status = locationDetails.getStatus();
    if (status != null) {
        for (LocationStatus statusItem : statusList) {
            if (statusItem.toCode().equalsIgnoreCase(status)) {
                locationStatus = statusItem;
                break;
            }
        }
    }
    location.setAddress(createAddress(locationDetails));
    location.setStatus(locationStatus);
    return location;
}
Also used : Organization(org.hl7.fhir.dstu3.model.Organization) Reference(org.hl7.fhir.dstu3.model.Reference) LocationStatus(org.hl7.fhir.dstu3.model.Location.LocationStatus) Location(org.hl7.fhir.dstu3.model.Location) IdType(org.hl7.fhir.dstu3.model.IdType)

Example 67 with ResourceType

use of org.hl7.fhir.dstu3.model.ResourceType in project gpconnect-demonstrator by nhsconnect.

the class OrganizationResourceProvider method convertOrganizationDetailsToOrganization.

public Organization convertOrganizationDetailsToOrganization(OrganizationDetails organizationDetails) {
    String mapKey = String.format("%s", organizationDetails.getOrgCode());
    Identifier identifier = new Identifier().setSystem(SystemURL.ID_ODS_ORGANIZATION_CODE).setValue(organizationDetails.getOrgCode());
    Organization organization = new Organization().setName(organizationDetails.getOrgName()).addIdentifier(identifier);
    String resourceId = String.valueOf(organizationDetails.getId());
    String versionId = String.valueOf(organizationDetails.getLastUpdated().getTime());
    String resourceType = organization.getResourceType().toString();
    IdType id = new IdType(resourceType, resourceId, versionId);
    organization.setId(id);
    organization.getMeta().setVersionId(versionId);
    organization.getMeta().setLastUpdated(organizationDetails.getLastUpdated());
    organization.getMeta().addProfile(SystemURL.SD_GPC_ORGANIZATION);
    organization = addAdditionalProperties(organization);
    return organization;
}
Also used : Identifier(org.hl7.fhir.dstu3.model.Identifier) Organization(org.hl7.fhir.dstu3.model.Organization) IdType(org.hl7.fhir.dstu3.model.IdType)

Example 68 with ResourceType

use of org.hl7.fhir.dstu3.model.ResourceType in project gpconnect-demonstrator by nhsconnect.

the class OrganizationResourceProvider method convertOrganizaitonDetailsListToOrganizationList.

private List<Organization> convertOrganizaitonDetailsListToOrganizationList(List<OrganizationDetails> organizationDetails) {
    Map<String, Organization> map = new HashMap<>();
    for (OrganizationDetails organizationDetail : organizationDetails) {
        String mapKey = String.format("%s", organizationDetail.getOrgCode());
        if (map.containsKey(mapKey)) {
            continue;
        }
        Identifier identifier = new Identifier().setSystem(SystemURL.ID_ODS_ORGANIZATION_CODE).setValue(organizationDetail.getOrgCode());
        Organization organization = new Organization().setName(organizationDetail.getOrgName()).addIdentifier(identifier);
        String resourceId = String.valueOf(organizationDetail.getId());
        String versionId = String.valueOf(organizationDetail.getLastUpdated().getTime());
        String resourceType = organization.getResourceType().toString();
        IdType id = new IdType(resourceType, resourceId, versionId);
        organization.setId(id);
        organization.getMeta().setVersionId(versionId);
        organization.getMeta().setLastUpdated(organizationDetail.getLastUpdated());
        organization.getMeta().addProfile(SystemURL.SD_GPC_ORGANIZATION);
        organization = addAdditionalProperties(organization);
        map.put(mapKey, organization);
    }
    return new ArrayList<>(map.values());
}
Also used : Organization(org.hl7.fhir.dstu3.model.Organization) Identifier(org.hl7.fhir.dstu3.model.Identifier) HashMap(java.util.HashMap) OrganizationDetails(uk.gov.hscic.model.organization.OrganizationDetails) ArrayList(java.util.ArrayList) IdType(org.hl7.fhir.dstu3.model.IdType)

Example 69 with ResourceType

use of org.hl7.fhir.dstu3.model.ResourceType in project gpconnect-demonstrator by nhsconnect.

the class PatientResourceProvider method patientDetailsToMinimalPatient.

private Patient patientDetailsToMinimalPatient(PatientDetails patientDetails) throws FHIRException {
    Patient patient = new Patient();
    Date lastUpdated = patientDetails.getLastUpdated() == null ? new Date() : patientDetails.getLastUpdated();
    String resourceId = String.valueOf(patientDetails.getId());
    String versionId = String.valueOf(lastUpdated.getTime());
    String resourceType = patient.getResourceType().toString();
    IdType id = new IdType(resourceType, resourceId, versionId);
    patient.setId(id);
    patient.getMeta().setVersionId(versionId);
    patient.getMeta().setLastUpdated(lastUpdated);
    patient.getMeta().addProfile(SystemURL.SD_GPC_PATIENT);
    Identifier patientNhsNumber = new Identifier().setSystem(SystemURL.ID_NHS_NUMBER).setValue(patientDetails.getNhsNumber());
    Extension extension = createCodingExtension("01", "Number present and verified", SystemURL.CS_CC_NHS_NUMBER_VERIF, SystemURL.SD_CC_EXT_NHS_NUMBER_VERIF);
    patientNhsNumber.addExtension(extension);
    patient.addIdentifier(patientNhsNumber);
    patient.setBirthDate(patientDetails.getDateOfBirth());
    String gender = patientDetails.getGender();
    if (gender != null) {
        patient.setGender(AdministrativeGender.fromCode(gender.toLowerCase(Locale.UK)));
    }
    Date registrationEndDateTime = patientDetails.getRegistrationEndDateTime();
    Date registrationStartDateTime = patientDetails.getRegistrationStartDateTime();
    Extension regDetailsExtension = new Extension(SystemURL.SD_EXTENSION_CC_REG_DETAILS);
    Period registrationPeriod = new Period().setStart(registrationStartDateTime).setEnd(registrationEndDateTime);
    Extension regPeriodExt = new Extension(SystemURL.SD_CC_EXT_REGISTRATION_PERIOD, registrationPeriod);
    regDetailsExtension.addExtension(regPeriodExt);
    String registrationStatusValue = patientDetails.getRegistrationStatus();
    patient.setActive(ACTIVE_REGISTRATION_STATUS.equals(registrationStatusValue) || null == registrationStatusValue);
    String registrationTypeValue = patientDetails.getRegistrationType();
    if (registrationTypeValue != null) {
        Coding regTypeCode = new Coding();
        regTypeCode.setCode(registrationTypeValue);
        // Should always be Temporary
        regTypeCode.setDisplay("Temporary");
        regTypeCode.setSystem(SystemURL.CS_REGISTRATION_TYPE);
        CodeableConcept regTypeConcept = new CodeableConcept();
        regTypeConcept.addCoding(regTypeCode);
        Extension regTypeExt = new Extension(SystemURL.SD_CC_EXT_REGISTRATION_TYPE, regTypeConcept);
        regDetailsExtension.addExtension(regTypeExt);
    }
    patient.addExtension(regDetailsExtension);
    String maritalStatus = patientDetails.getMaritalStatus();
    if (maritalStatus != null) {
        CodeableConcept marital = new CodeableConcept();
        Coding maritalCoding = new Coding();
        maritalCoding.setSystem(SystemURL.VS_CC_MARITAL_STATUS);
        maritalCoding.setCode(patientDetails.getMaritalStatus());
        maritalCoding.setDisplay("Married");
        marital.addCoding(maritalCoding);
        patient.setMaritalStatus(marital);
    }
    patient.setMultipleBirth(patientDetails.isMultipleBirth());
    if (patientDetails.isDeceased()) {
        DateTimeType decesed = new DateTimeType(patientDetails.getDeceased());
        patient.setDeceased(decesed);
    }
    return patient;
}
Also used : Extension(org.hl7.fhir.dstu3.model.Extension) DateTimeType(org.hl7.fhir.dstu3.model.DateTimeType) Identifier(org.hl7.fhir.dstu3.model.Identifier) Coding(org.hl7.fhir.dstu3.model.Coding) Patient(org.hl7.fhir.dstu3.model.Patient) Period(org.hl7.fhir.dstu3.model.Period) Date(java.util.Date) IdType(org.hl7.fhir.dstu3.model.IdType) CodeableConcept(org.hl7.fhir.dstu3.model.CodeableConcept)

Example 70 with ResourceType

use of org.hl7.fhir.dstu3.model.ResourceType in project dpc-app by CMSgov.

the class DataServiceTest method whenGetJobBatchesReturnsCompletedJobWithOperationOutcome.

@Test
public void whenGetJobBatchesReturnsCompletedJobWithOperationOutcome() {
    UUID patientID = UUID.randomUUID();
    DPCResourceType resourceType = DPCResourceType.ExplanationOfBenefit;
    workJob(false, DPCResourceType.OperationOutcome);
    Resource resource = dataService.retrieveData(orgID, orgNPI, providerNPI, List.of(patientID.toString()), resourceType);
    Assertions.assertTrue(resource instanceof OperationOutcome);
}
Also used : OperationOutcome(org.hl7.fhir.dstu3.model.OperationOutcome) Resource(org.hl7.fhir.dstu3.model.Resource) DPCResourceType(gov.cms.dpc.fhir.DPCResourceType) UUID(java.util.UUID) Test(org.junit.jupiter.api.Test)

Aggregations

JsonElement (com.google.gson.JsonElement)33 HashSet (java.util.HashSet)26 Bundle (org.hl7.fhir.r4.model.Bundle)24 ResourceType (org.hl7.fhir.r4.model.Enumerations.ResourceType)21 Test (org.junit.Test)20 Nonnull (javax.annotation.Nonnull)18 ArrayList (java.util.ArrayList)15 IBaseResource (org.hl7.fhir.instance.model.api.IBaseResource)10 FhirContext (ca.uhn.fhir.context.FhirContext)9 File (java.io.File)9 Row (org.apache.spark.sql.Row)9 IdType (org.hl7.fhir.dstu3.model.IdType)9 BundleEntryComponent (org.hl7.fhir.r4.model.Bundle.BundleEntryComponent)9 JsonObject (com.google.gson.JsonObject)8 Test (org.junit.jupiter.api.Test)8 MockHttpServletResponse (org.springframework.mock.web.MockHttpServletResponse)8 IOException (java.io.IOException)7 List (java.util.List)7 Bundle (org.hl7.fhir.dstu3.model.Bundle)7 Resource (org.hl7.fhir.r4.model.Resource)7