use of org.hl7.fhir.dstu3.model.Organization in project gpconnect-demonstrator by nhsconnect.
the class OrganizationResourceProvider method getOrganizationsByODSCode.
@Search
public List<Organization> getOrganizationsByODSCode(@RequiredParam(name = Organization.SP_IDENTIFIER) TokenParam tokenParam, @Sort SortSpec sort, @Count Integer count) {
if (StringUtils.isBlank(tokenParam.getSystem()) || StringUtils.isBlank(tokenParam.getValue())) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new InvalidRequestException("Missing identifier token"), SystemCode.INVALID_PARAMETER, IssueType.INVALID);
}
if (tokenParam.getSystem().equals(SystemURL.ID_ODS_ORGANIZATION_CODE) || tokenParam.getSystem().equals(SystemURL.ID_ODS_OLD_ORGANIZATION_CODE)) {
List<Organization> organizationDetails = convertOrganizaitonDetailsListToOrganizationList(organizationSearch.findOrganizationDetailsByOrgODSCode(tokenParam.getValue()));
if (organizationDetails.isEmpty()) {
return null;
}
if (sort != null && sort.getParamName().equalsIgnoreCase(Location.SP_STATUS)) {
Collections.sort(organizationDetails, (Organization a, Organization b) -> {
String aStatus = a.getName();
String bStatus = b.getName();
if (aStatus == null && bStatus == null) {
return 0;
}
if (aStatus == null && bStatus != null) {
return -1;
}
if (aStatus != null && bStatus == null) {
return 1;
}
return aStatus.compareToIgnoreCase(bStatus);
});
}
// Update startIndex if we do paging
return count != null ? organizationDetails.subList(0, count) : organizationDetails;
} else {
throw OperationOutcomeFactory.buildOperationOutcomeException(new InvalidRequestException("Invalid system code"), SystemCode.INVALID_PARAMETER, IssueType.INVALID);
}
}
use of org.hl7.fhir.dstu3.model.Organization in project gpconnect-demonstrator by nhsconnect.
the class PatientResourceProvider method setStaticPatientData.
private Patient setStaticPatientData(Patient patient) {
patient.setLanguage(("en-GB"));
patient.addExtension(createCodingExtension("CG", "Greek Cypriot", SystemURL.CS_CC_ETHNIC_CATEGORY, SystemURL.SD_CC_EXT_ETHNIC_CATEGORY));
patient.addExtension(createCodingExtension("SomeSnomedCode", "Some Snomed Code", SystemURL.CS_CC_RELIGIOUS_AFFILI, SystemURL.SD_CC_EXT_RELIGIOUS_AFFILI));
patient.addExtension(new Extension(SystemURL.SD_PATIENT_CADAVERIC_DON, new BooleanType(false)));
patient.addExtension(createCodingExtension("H", "UK Resident", SystemURL.CS_CC_RESIDENTIAL_STATUS, SystemURL.SD_CC_EXT_RESIDENTIAL_STATUS));
patient.addExtension(createCodingExtension("3", "To pay hotel fees only", SystemURL.CS_CC_TREATMENT_CAT, SystemURL.SD_CC_EXT_TREATMENT_CAT));
Extension nhsCommExtension = new Extension();
nhsCommExtension.setUrl(SystemURL.SD_CC_EXT_NHS_COMMUNICATION);
nhsCommExtension.addExtension(createCodingExtension("en", "English", SystemURL.CS_CC_HUMAN_LANG, SystemURL.SD_CC_EXT_COMM_LANGUAGE));
nhsCommExtension.addExtension(new Extension(SystemURL.SD_CC_COMM_PREFERRED, new BooleanType(false)));
nhsCommExtension.addExtension(createCodingExtension("RWR", "Received written", SystemURL.CS_CC_LANG_ABILITY_MODE, SystemURL.SD_CC_MODE_OF_COMM));
nhsCommExtension.addExtension(createCodingExtension("E", "Excellent", SystemURL.CS_CC_LANG_ABILITY_PROFI, SystemURL.SD_CC_COMM_PROFICIENCY));
nhsCommExtension.addExtension(new Extension(SystemURL.SD_CC_INTERPRETER_REQUIRED, new BooleanType(false)));
patient.addExtension(nhsCommExtension);
Identifier localIdentifier = new Identifier();
localIdentifier.setUse(IdentifierUse.USUAL);
localIdentifier.setSystem(SystemURL.ID_LOCAL_PATIENT_IDENTIFIER);
localIdentifier.setValue("123456");
CodeableConcept liType = new CodeableConcept();
Coding liTypeCoding = new Coding();
liTypeCoding.setCode("EN");
liTypeCoding.setDisplay("Employer number");
liTypeCoding.setSystem(SystemURL.VS_IDENTIFIER_TYPE);
liType.addCoding(liTypeCoding);
localIdentifier.setType(liType);
localIdentifier.setAssigner(new Reference("Organization/1"));
patient.addIdentifier(localIdentifier);
Calendar calendar = Calendar.getInstance();
calendar.set(2017, 1, 1);
DateTimeDt endDate = new DateTimeDt(calendar.getTime());
calendar.set(2016, 1, 1);
DateTimeDt startDate = new DateTimeDt(calendar.getTime());
Period pastPeriod = new Period().setStart(calendar.getTime()).setEnd(calendar.getTime());
patient.addName().setFamily("AnotherOfficialFamilyName").addGiven("AnotherOfficialGivenName").setUse(NameUse.OFFICIAL).setPeriod(pastPeriod);
patient.addName().setFamily("AdditionalFamily").addGiven("AdditionalGiven").setUse(NameUse.TEMP);
patient.addTelecom(staticElHelper.getValidTelecom());
patient.addAddress(staticElHelper.getValidAddress());
return patient;
}
use of org.hl7.fhir.dstu3.model.Organization in project gpconnect-demonstrator by nhsconnect.
the class PatientResourceProvider method StructuredRecordOperation.
@Operation(name = GET_STRUCTURED_RECORD_OPERATION_NAME)
public Bundle StructuredRecordOperation(@ResourceParam Parameters params) throws FHIRException {
Bundle structuredBundle = new Bundle();
Boolean getAllergies = false;
Boolean includeResolved = false;
Boolean getMedications = false;
Boolean includePrescriptionIssues = false;
Period medicationPeriod = null;
String NHS = getNhsNumber(params);
PatientDetails patientDetails = patientSearch.findPatient(NHS);
// see https://nhsconnect.github.io/gpconnect/accessrecord_structured_development_retrieve_patient_record.html#error-handling
if (patientDetails == null || patientDetails.isSensitive() || patientDetails.isDeceased() || !patientDetails.isActive()) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new ResourceNotFoundException("No patient details found for patient ID: " + NHS), SystemCode.PATIENT_NOT_FOUND, IssueType.NOTFOUND);
}
if (NHS.equals(patientNoconsent)) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new ForbiddenOperationException("No patient consent to share for patient ID: " + NHS), SystemCode.NO_PATIENT_CONSENT, IssueType.FORBIDDEN);
}
operationOutcome = null;
for (ParametersParameterComponent param : params.getParameter()) {
if (validateParametersName(param.getName())) {
if (param.getName().equals(SystemConstants.INCLUDE_ALLERGIES)) {
getAllergies = true;
if (param.getPart().isEmpty()) {
// addWarningIssue(param, IssueType.REQUIRED, "Miss parameter part : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES);
throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
}
boolean includeResolvedParameterPartPresent = false;
for (ParametersParameterComponent paramPart : param.getPart()) {
if (paramPart.getName().equals(SystemConstants.INCLUDE_RESOLVED_ALLERGIES)) {
if (paramPart.getValue() instanceof BooleanType) {
includeResolved = Boolean.valueOf(paramPart.getValue().primitiveValue());
includeResolvedParameterPartPresent = true;
} else {
throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
}
} else {
addWarningIssue(param, paramPart, IssueType.NOTSUPPORTED);
// throw OperationOutcomeFactory.buildOperationOutcomeException(
// new UnprocessableEntityException("Incorrect parameter passed : " + paramPart.getName()),
// SystemCode.INVALID_PARAMETER, IssueType.INVALID);
}
}
if (!includeResolvedParameterPartPresent) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
}
}
if (param.getName().equals(SystemConstants.INCLUDE_MEDICATION)) {
getMedications = true;
boolean isIncludedPrescriptionIssuesExist = false;
for (ParametersParameterComponent paramPart : param.getPart()) {
if (paramPart.getName().equals(SystemConstants.INCLUDE_PRESCRIPTION_ISSUES)) {
if (paramPart.getValue() instanceof BooleanType) {
includePrescriptionIssues = Boolean.valueOf(paramPart.getValue().primitiveValue());
isIncludedPrescriptionIssuesExist = true;
}
} else if (paramPart.getName().equals(SystemConstants.MEDICATION_SEARCH_FROM_DATE) && paramPart.getValue() instanceof DateType) {
DateType startDateDt = (DateType) paramPart.getValue();
medicationPeriod = new Period();
medicationPeriod.setStart(startDateDt.getValue());
medicationPeriod.setEnd(null);
String startDate = startDateDt.asStringValue();
if (!validateStartDateParamAndEndDateParam(startDate, null)) {
// addWarningIssue(param, paramPart, IssueType.INVALID, "Invalid date used");
}
} else {
addWarningIssue(param, paramPart, IssueType.NOTSUPPORTED);
// throw OperationOutcomeFactory.buildOperationOutcomeException(
// new UnprocessableEntityException("Incorrect parameter passed : " + paramPart.getName()),
// SystemCode.INVALID_PARAMETER, IssueType.INVALID);
}
}
if (!isIncludedPrescriptionIssuesExist) {
// # 1.2.6 now defaults to true if not provided
includePrescriptionIssues = true;
}
}
} else {
// invalid parameter
addWarningIssue(param, IssueType.NOTSUPPORTED);
}
}
// for parameter
// Add Patient
Patient patient = patientDetailsToPatientResourceConverter(patientDetails);
if (patient.getIdentifierFirstRep().getValue().equals(NHS)) {
structuredBundle.addEntry().setResource(patient);
}
// Organization from patient
Set<String> orgIds = new HashSet<>();
orgIds.add(patientDetails.getManagingOrganization());
// Practitioner from patient
Set<String> practitionerIds = new HashSet<>();
List<Reference> practitionerReferenceList = patient.getGeneralPractitioner();
practitionerReferenceList.forEach(practitionerReference -> {
String[] pracRef = practitionerReference.getReference().split("/");
if (pracRef.length > 1) {
practitionerIds.add(pracRef[1]);
}
});
if (getAllergies) {
structuredBundle = structuredAllergyIntoleranceBuilder.buildStructuredAllergyIntolerence(NHS, practitionerIds, structuredBundle, includeResolved);
}
if (getMedications) {
structuredBundle = populateMedicationBundle.addMedicationBundleEntries(structuredBundle, patientDetails, includePrescriptionIssues, medicationPeriod, practitionerIds, orgIds);
}
// Add all practitioners and practitioner roles
for (String practitionerId : practitionerIds) {
Practitioner pracResource = practitionerResourceProvider.getPractitionerById(new IdType(practitionerId));
structuredBundle.addEntry().setResource(pracResource);
List<PractitionerRole> practitionerRoleList = practitionerRoleResourceProvider.getPractitionerRoleByPracticionerId(new IdType(practitionerId));
for (PractitionerRole role : practitionerRoleList) {
String[] split = role.getOrganization().getReference().split("/");
orgIds.add(split[1]);
structuredBundle.addEntry().setResource(role);
}
}
// Add all organizations
for (String orgId : orgIds) {
OrganizationDetails organizationDetails = organizationSearch.findOrganizationDetails(new Long(orgId));
Organization organization = organizationResourceProvider.convertOrganizationDetailsToOrganization(organizationDetails);
structuredBundle.addEntry().setResource(organization);
}
structuredBundle.setType(BundleType.COLLECTION);
structuredBundle.getMeta().addProfile(SystemURL.SD_GPC_STRUCTURED_BUNDLE);
if (operationOutcome != null) {
structuredBundle.addEntry().setResource(operationOutcome);
} else {
removeDuplicateResources(structuredBundle);
}
return structuredBundle;
}
use of org.hl7.fhir.dstu3.model.Organization in project gpconnect-demonstrator by nhsconnect.
the class OrganizationResourceProvider method convertOrganizatonDetailsListToOrganizationList.
private List<Organization> convertOrganizatonDetailsListToOrganizationList(List<OrganizationDetails> organizationDetails) {
Map<Long, Organization> map = new HashMap<>();
for (OrganizationDetails organizationDetail : organizationDetails) {
// Changed key to be logical id rather than ods code since can have > 1 org per ods code
// for 1.2.2
Long mapKey = organizationDetail.getId();
if (map.containsKey(mapKey)) {
continue;
}
Identifier identifier = new Identifier().setSystem(SystemURL.ID_ODS_ORGANIZATION_CODE).setValue(organizationDetail.getOrgCode());
Organization organization = new Organization().setName(organizationDetail.getOrgName()).addIdentifier(identifier);
String resourceId = String.valueOf(organizationDetail.getId());
String versionId = String.valueOf(organizationDetail.getLastUpdated().getTime());
String resourceType = organization.getResourceType().toString();
IdType id = new IdType(resourceType, resourceId, versionId);
organization.setId(id);
organization.getMeta().setVersionId(versionId);
organization.getMeta().setLastUpdated(organizationDetail.getLastUpdated());
organization.getMeta().addProfile(SystemURL.SD_GPC_ORGANIZATION);
organization = addAdditionalProperties(organization);
map.put(mapKey, organization);
}
return new ArrayList<>(map.values());
}
use of org.hl7.fhir.dstu3.model.Organization in project gpconnect-demonstrator by nhsconnect.
the class OrganizationResourceProvider method getValidAddress.
private Address getValidAddress(Organization organization) {
List<LocationDetails> locationsDetails = locationSearch.findAllLocations();
LocationDetails location = null;
for (LocationDetails locationDetails : locationsDetails) {
if (locationDetails.getOrgOdsCode().equals(organization.getIdentifierFirstRep().getValue())) {
location = locationDetails;
break;
}
}
Address orgAddress = null;
if (location != null) {
orgAddress = new Address();
orgAddress.setUse(AddressUse.WORK);
// #152
// this looks very odd but is deliberate, there's a similar issue in locationResourceProvider.createAddress
// They result from a change to spec to remove the state attribute from the address
// See the commit cd26528 by James Cox 6/3/18
orgAddress.addLine(location.getAddressLine());
orgAddress.addLine(location.getAddressCity());
orgAddress.setCity(location.getAddressDistrict());
orgAddress.setDistrict(location.getAddressState());
orgAddress.setPostalCode(location.getAddressPostalCode());
}
return orgAddress;
}
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