Examples with FHIRFormatError org.hl7.fhir.exceptions.FHIRFormatError used on opensource projects

Example 26 with FHIRFormatError

use of org.hl7.fhir.exceptions.FHIRFormatError in project org.hl7.fhir.core by hapifhir.

the class ISO21090Importer method addParentProperties.

private void addParentProperties(List<ElementDefinition> elements, String name, String parent, boolean attrMode, boolean snapshot) throws FHIRFormatError {
    DataType dt = types.get(parent);
    if (dt == null)
        throw new Error("No find " + parent);
    if (dt.getParent() != null)
        addParentProperties(elements, name, dt.getParent(), attrMode, snapshot);
    produceProperties(elements, name, dt.getProperties(), attrMode, snapshot);
}

Example 27 with FHIRFormatError

use of org.hl7.fhir.exceptions.FHIRFormatError in project org.hl7.fhir.core by hapifhir.

the class ExamplesPackageBuilder method process.

private void process(String source) throws FHIRFormatError, FileNotFoundException, IOException {
    Set<String> set = new HashSet<>();
    for (File f : new File(source).listFiles()) {
        if (f.getName().endsWith(".json")) {
            JsonObject obj = JsonTrackingParser.parseJson(new FileInputStream(f));
            if (obj.has("resourceType") && obj.has("id")) {
                String type = obj.get("resourceType").getAsString();
                String id = obj.get("id").getAsString();
                byte[] content = TextFile.fileToBytes(f);
                if (type.equals("ConceptMap")) {
                    System.out.println("convert " + f.getName());
                    content = r5ToR4B(content);
                    TextFile.bytesToFile(content, f);
                }
            // TextFile.bytesToFile(content, Utilities.path(dest2, type+"-"+id+".json"));
            // if (!set.contains(type+"/"+id)) {
            // set.add(type+"/"+id);
            // pck.addFile(Category.RESOURCE, type+"-"+id+".json", content);
            // }
            }
        }
    }
// pck.finish();
// 
}

Example 28 with FHIRFormatError

use of org.hl7.fhir.exceptions.FHIRFormatError in project org.hl7.fhir.core by hapifhir.

the class LoincToDEConvertor method saveBundle.

private void saveBundle() throws FHIRFormatError, IOException, XmlPullParserException {
    XmlParser xml = new XmlParser();
    FileOutputStream s = new FileOutputStream(dest);
    xml.compose(s, bundle, true);
    s.close();
}

Example 29 with FHIRFormatError

use of org.hl7.fhir.exceptions.FHIRFormatError in project org.hl7.fhir.core by hapifhir.

the class ValueSetExpansionCache method loadCache.

private void loadCache() throws FHIRFormatError, IOException {
    File[] files = new File(cacheFolder).listFiles();
    for (File f : files) {
        if (f.getName().endsWith(".xml")) {
            final FileInputStream is = new FileInputStream(f);
            try {
                Resource r = context.newXmlParser().setOutputStyle(OutputStyle.PRETTY).parse(is);
                if (r instanceof OperationOutcome) {
                    OperationOutcome oo = (OperationOutcome) r;
                    expansions.put(ToolingExtensions.getExtension(oo, VS_ID_EXT).getValue().toString(), new ValueSetExpansionOutcome(new XhtmlComposer(true, false).composePlainText(oo.getText().getDiv())));
                } else {
                    ValueSet vs = (ValueSet) r;
                    expansions.put(vs.getUrl(), new ValueSetExpansionOutcome(vs, null));
                }
            } finally {
                IOUtils.closeQuietly(is);
            }
        }
    }
}

Example 30 with FHIRFormatError

use of org.hl7.fhir.exceptions.FHIRFormatError in project org.hl7.fhir.core by hapifhir.

the class LoincToDEConvertor method saveBundle.

private void saveBundle() throws FHIRFormatError, IOException, XmlPullParserException {
    XmlParser xml = new XmlParser();
    FileOutputStream s = new FileOutputStream(dest);
    xml.compose(s, bundle, true);
    s.close();
}