use of org.hl7.fhir.r4.formats.XmlParser in project org.hl7.fhir.core by hapifhir.
the class ToolsHelper method processExamples.
public void processExamples(String rootDir, Collection<String> list) throws FHIRException {
for (String n : list) {
try {
String filename = rootDir + n + ".xml";
// 1. produce canonical XML
CSFileInputStream source = new CSFileInputStream(filename);
FileOutputStream dest = new FileOutputStream(Utilities.changeFileExt(filename, ".canonical.xml"));
XmlParser p = new XmlParser();
Resource r = p.parse(source);
XmlParser cxml = new XmlParser();
cxml.setOutputStyle(OutputStyle.CANONICAL);
cxml.compose(dest, r);
// 2. produce JSON
source = new CSFileInputStream(filename);
dest = new FileOutputStream(Utilities.changeFileExt(filename, ".json"));
r = p.parse(source);
JsonParser json = new JsonParser();
json.setOutputStyle(OutputStyle.PRETTY);
json.compose(dest, r);
json = new JsonParser();
json.setOutputStyle(OutputStyle.CANONICAL);
dest = new FileOutputStream(Utilities.changeFileExt(filename, ".canonical.json"));
json.compose(dest, r);
// 2. produce JSON
dest = new FileOutputStream(Utilities.changeFileExt(filename, ".ttl"));
RdfParserBase rdf = new RdfParser();
rdf.compose(dest, r);
} catch (Exception e) {
e.printStackTrace();
throw new FHIRException("Error Processing " + n + ".xml: " + e.getMessage(), e);
}
}
}
use of org.hl7.fhir.r4.formats.XmlParser in project org.hl7.fhir.core by hapifhir.
the class ToolsHelper method testRoundTrip.
public void testRoundTrip(String rootDir, String tmpDir, Collection<String> names) throws Throwable {
try {
System.err.println("Round trip from " + rootDir + " to " + tmpDir + ":" + Integer.toString(names.size()) + " files");
for (String n : names) {
System.err.print(" " + n);
String source = rootDir + n + ".xml";
// String tmpJson = tmpDir + n + ".json";
String tmp = tmpDir + n.replace(File.separator, "-") + ".tmp";
String dest = tmpDir + n.replace(File.separator, "-") + ".java.xml";
FileInputStream in = new FileInputStream(source);
XmlParser xp = new XmlParser();
Resource r = xp.parse(in);
System.err.print(".");
JsonParser jp = new JsonParser();
FileOutputStream out = new FileOutputStream(tmp);
jp.setOutputStyle(OutputStyle.PRETTY);
jp.compose(out, r);
out.close();
r = null;
System.err.print(".");
in = new FileInputStream(tmp);
System.err.print(",");
r = jp.parse(in);
System.err.print(".");
out = new FileOutputStream(dest);
new XmlParser().compose(out, r, true);
System.err.println("!");
out.close();
r = null;
System.gc();
}
} catch (Throwable e) {
System.err.println("Error: " + e.getMessage());
throw e;
}
}
use of org.hl7.fhir.r4.formats.XmlParser in project org.hl7.fhir.core by hapifhir.
the class JavaCoreGenerator method generate.
private void generate(String version, String src, String dest) throws Exception {
long start = System.currentTimeMillis();
Date date = new Date();
String ap = Utilities.path(src);
System.out.println("Load Configuration from " + ap);
Configuration config = new Configuration(ap);
String pid = VersionUtilities.isR4BVer(version) ? "r4b" : "r5";
String jid = VersionUtilities.isR4BVer(version) ? "r4b" : "r5";
FilesystemPackageCacheManager pcm = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION);
System.out.println("Cache: " + pcm.getFolder());
System.out.println("Load hl7.fhir." + pid + ".core");
NpmPackage npm = pcm.loadPackage("hl7.fhir." + pid + ".core", version);
Definitions master = VersionUtilities.isR4BVer(version) ? DefinitionsLoaderR4B.load(npm) : DefinitionsLoaderR5.load(npm);
master.fix();
markValueSets(master, config);
System.out.println("Load hl7.fhir." + pid + ".expansions");
Definitions expansions = DefinitionsLoaderR5.load(pcm.loadPackage("hl7.fhir." + pid + ".expansions", version));
System.out.println("Process Expansions");
updateExpansions(master, expansions);
System.out.println("Generate Model");
System.out.println(" .. Constants");
JavaConstantsGenerator cgen = new JavaConstantsGenerator(new FileOutputStream(Utilities.path(dest, "src", "main", "java", "org", "hl7", "fhir", jid, "model", "Constants.java")), master, config, date, npm.version(), jid);
cgen.generate();
cgen.close();
System.out.println(" .. Enumerations");
JavaEnumerationsGenerator egen = new JavaEnumerationsGenerator(new FileOutputStream(Utilities.path(dest, "src", "main", "java", "org", "hl7", "fhir", jid, "model", "Enumerations.java")), master, config, date, npm.version(), jid);
egen.generate();
egen.close();
JavaFactoryGenerator fgen = new JavaFactoryGenerator(new FileOutputStream(Utilities.path(dest, "src", "main", "java", "org", "hl7", "fhir", jid, "model", "ResourceFactory.java")), master, config, date, npm.version(), jid);
JavaTypeGenerator tgen = new JavaTypeGenerator(new FileOutputStream(Utilities.path(dest, "src", "main", "java", "org", "hl7", "fhir", jid, "model", "ResourceType.java")), master, config, date, npm.version(), jid);
JavaParserJsonGenerator jgen = new JavaParserJsonGenerator(new FileOutputStream(Utilities.path(dest, "src", "main", "java", "org", "hl7", "fhir", jid, "formats", "JsonParser.java")), master, config, date, npm.version(), jid);
JavaParserXmlGenerator xgen = new JavaParserXmlGenerator(new FileOutputStream(Utilities.path(dest, "src", "main", "java", "org", "hl7", "fhir", jid, "formats", "XmlParser.java")), master, config, date, npm.version(), jid);
JavaParserRdfGenerator rgen = new JavaParserRdfGenerator(new FileOutputStream(Utilities.path(dest, "src", "main", "java", "org", "hl7", "fhir", jid, "formats", "RdfParser.java")), master, config, date, npm.version(), jid);
if (VersionUtilities.isR4BVer(version)) {
StructureDefinition sd = master.getStructures().get("http://hl7.org/fhir/StructureDefinition/Element");
genClass(version, dest, date, config, jid, npm, master, jgen, xgen, rgen, sd);
}
for (StructureDefinition sd : master.getStructures().getList()) {
if (sd.getDerivation() == TypeDerivationRule.SPECIALIZATION && sd.getKind() == StructureDefinitionKind.COMPLEXTYPE) {
if (!Utilities.existsInList(sd.getName(), "Base", "PrimitiveType") && !sd.getName().contains(".") && sd.getAbstract()) {
genClass(version, dest, date, config, jid, npm, master, jgen, xgen, rgen, sd);
}
}
}
for (StructureDefinition sd : master.getStructures().getList()) {
if (sd.getDerivation() == TypeDerivationRule.SPECIALIZATION && sd.getKind() == StructureDefinitionKind.COMPLEXTYPE) {
if (!Utilities.existsInList(sd.getName(), "Base", "PrimitiveType") && !sd.getName().contains(".") && !sd.getAbstract()) {
genClass(version, dest, date, config, jid, npm, master, jgen, xgen, rgen, sd);
}
}
}
if (VersionUtilities.isR4BVer(version)) {
StructureDefinition sd = master.getStructures().get("http://hl7.org/fhir/StructureDefinition/Resource");
genClass(version, dest, date, config, jid, npm, master, jgen, xgen, rgen, sd);
}
for (StructureDefinition sd : master.getStructures().getList()) {
if (sd.getDerivation() == TypeDerivationRule.SPECIALIZATION && sd.getKind() == StructureDefinitionKind.RESOURCE) {
if (!Utilities.existsInList(sd.getName(), "Base", "PrimitiveType") && !sd.getName().contains(".") && sd.getAbstract()) {
genClass(version, dest, date, config, jid, npm, master, jgen, xgen, rgen, sd);
}
}
}
for (StructureDefinition sd : master.getStructures().getList()) {
if (sd.getDerivation() == TypeDerivationRule.SPECIALIZATION && sd.getKind() == StructureDefinitionKind.RESOURCE) {
if (!Utilities.existsInList(sd.getName(), "Base", "PrimitiveType") && !sd.getName().contains(".") && !sd.getAbstract()) {
genClass(version, dest, date, config, jid, npm, master, jgen, xgen, rgen, sd);
}
}
}
System.out.println(" .. Factory");
fgen.generate();
fgen.close();
System.out.println(" .. Types");
tgen.generate();
tgen.close();
System.out.println(" .. JsonParser");
jgen.generate();
jgen.close();
System.out.println(" .. XmlParser");
xgen.generate();
xgen.close();
System.out.println(" .. RdfParser");
rgen.generate();
rgen.close();
System.out.println("Done (" + Long.toString(System.currentTimeMillis() - start) + "ms)");
}
use of org.hl7.fhir.r4.formats.XmlParser in project org.hl7.fhir.core by hapifhir.
the class ClientUtils method getFeedAsByteArray.
public byte[] getFeedAsByteArray(Bundle feed, boolean pretty, boolean isJson) {
ByteArrayOutputStream baos = null;
byte[] byteArray = null;
try {
baos = new ByteArrayOutputStream();
IParser parser = null;
if (isJson) {
parser = new JsonParser();
} else {
parser = new XmlParser();
}
parser.setOutputStyle(pretty ? OutputStyle.PRETTY : OutputStyle.NORMAL);
parser.compose(baos, feed);
baos.close();
byteArray = baos.toByteArray();
baos.close();
} catch (Exception e) {
try {
baos.close();
} catch (Exception ex) {
throw new EFhirClientException("Error closing output stream", ex);
}
throw new EFhirClientException("Error converting output stream to byte array", e);
}
return byteArray;
}
use of org.hl7.fhir.r4.formats.XmlParser in project org.hl7.fhir.core by hapifhir.
the class SimpleWorkerContext method loadFromFile.
private void loadFromFile(InputStream stream, String name) throws IOException, FHIRException {
XmlParser xml = new XmlParser();
Bundle f = (Bundle) xml.parse(stream);
for (BundleEntryComponent e : f.getEntry()) {
if (e.getFullUrl() == null) {
System.out.println("unidentified resource in " + name + " (no fullUrl)");
}
seeResource(e.getFullUrl(), e.getResource());
}
}
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