Examples with DOCUMENT org.hl7.fhir.r4.model.Bundle.BundleType.DOCUMENT used on opensource projects

Example 26 with DOCUMENT

use of org.hl7.fhir.r4.model.Bundle.BundleType.DOCUMENT in project summary-care-record-api by NHSDigital.

the class GetScrService method getScrId.

@LogExecutionTime
public Bundle getScrId(String nhsNumber, String nhsdAsid, String clientIp) {
    Document scrIdXml = getScrIdRawXml(nhsNumber, nhsdAsid, clientIp);
    checkDetectedIssues(scrIdXml);
    EventListQueryResponse response = eventListQueryResponseParser.parseXml(scrIdXml);
    Bundle bundle = buildBundle();
    if (StringUtils.isNotEmpty(response.getLatestScrId())) {
        bundle.setTotal(1);
        Patient patient = buildPatientResource(nhsNumber);
        DocumentReference documentReference = buildDocumentReference(nhsNumber, response, patient);
        bundle.addEntry(new BundleEntryComponent().setFullUrl(getScrUrl() + "/DocumentReference/" + documentReference.getId()).setResource(documentReference).setSearch(new Bundle.BundleEntrySearchComponent().setMode(MATCH)));
        bundle.addEntry(new BundleEntryComponent().setFullUrl(patient.getId()).setResource(patient));
    } else {
        bundle.setTotal(0);
    }
    return bundle;
}

Example 27 with DOCUMENT

use of org.hl7.fhir.r4.model.Bundle.BundleType.DOCUMENT in project Gravity-SDOH-Exchange-RI by FHIR.

the class PersonalCharacteristicsService method retrieveDerivedFrom.

public AttachmentDto retrieveDerivedFrom(String id) {
    Observation obs = observationRepository.getWithDocumentReference(id);
    if (obs == null) {
        throw new ResourceNotFoundException(new IdType(Observation.class.getSimpleName(), id));
    }
    IBaseResource ref = obs.getDerivedFromFirstRep().getResource();
    if (ref == null || !(ref instanceof DocumentReference)) {
        throw new IllegalStateException("Observation with id " + id + " does not have a derived-from field set to a Document Reference resource.");
    }
    DocumentReference docRef = (DocumentReference) ref;
    Attachment attachment = docRef.getContentFirstRep().getAttachment();
    if (attachment == null) {
        throw new IllegalStateException("DocumentReference with id " + docRef.getIdElement().getIdPart() + " does not have an attachment.");
    }
    return AttachmentDto.builder().content(attachment.getData()).contentType(attachment.getContentType()).title(attachment.getTitle()).build();
}

Example 28 with DOCUMENT

use of org.hl7.fhir.r4.model.Bundle.BundleType.DOCUMENT in project integration-adaptor-111 by nhsconnect.

the class EncounterReportBundleServiceTest method shouldMapIncomingReferralWithPractitioners.

@Test
@SuppressWarnings("MagicNumber")
public void shouldMapIncomingReferralWithPractitioners() throws XmlException {
    ItkReportHeader itkReportHeader = new ItkReportHeader();
    List<Reference> recipients = new ArrayList<>();
    when(reference.getResource()).thenReturn(PRACTITIONER);
    recipients.add(reference);
    REFERRAL_REQUEST.setRecipient(recipients);
    Bundle encounterBundle = encounterReportBundleService.createEncounterBundle(document, itkReportHeader, MESSAGEID);
    List<BundleEntryComponent> entries = encounterBundle.getEntry();
    verifyEntry(entries.get(7), REFERRAL_REQUEST_ID.getValue(), ResourceType.ReferralRequest);
    verifyEntry(entries.get(8), PRACTITIONER_ID.getValue(), ResourceType.Practitioner);
}

Example 29 with DOCUMENT

use of org.hl7.fhir.r4.model.Bundle.BundleType.DOCUMENT in project org.hl7.fhir.core by hapifhir.

the class CountryCodesConverter method execute.

private void execute() throws ParserConfigurationException, SAXException, IOException {
    Document src = load();
    CodeSystem cs1 = new CodeSystem();
    CodeSystem cs2 = new CodeSystem();
    CodeSystem cs3 = new CodeSystem();
    setMetadata(src, cs1, "iso3166", "urn:iso:std:iso:3166", "", "");
    setMetadata(src, cs2, "iso3166-2", "urn:iso:std:iso:3166:-2", "Part2", " Part 2");
    cs1.addProperty().setCode("canonical").setDescription("The 2 letter code that identifies the same country (so 2/3/numeric codes can be aligned)").setType(PropertyType.CODE);
    cs2.addProperty().setCode("country").setDescription("The 2 letter code that identifies the country for the subdivision").setType(PropertyType.CODE);
    for (Element e : XMLUtil.getNamedChildren(src.getDocumentElement(), "country")) {
        System.out.println(e.getAttribute("id"));
        String c2 = XMLUtil.getNamedChildText(e, "alpha-2-code");
        String c3 = XMLUtil.getNamedChildText(e, "alpha-3-code");
        String cN = XMLUtil.getNamedChildText(e, "numeric-code");
        Element n = XMLUtil.getNamedChildByAttribute(e, "short-name", "lang3code", "eng");
        if (n == null)
            n = XMLUtil.getNamedChildByAttribute(e, "short-name-upper-case", "lang3code", "eng");
        if (n == null)
            continue;
        String name = n.getTextContent();
        n = XMLUtil.getNamedChildByAttribute(e, "full-name", "lang3code", "eng");
        if (n == null)
            n = XMLUtil.getNamedChildByAttribute(e, "full-name-upper-case", "lang3code", "eng");
        if (n == null)
            n = XMLUtil.getNamedChildByAttribute(e, "short-name", "lang3code", "eng");
        if (n == null)
            n = XMLUtil.getNamedChildByAttribute(e, "short-name-upper-case", "lang3code", "eng");
        String desc = n.getTextContent();
        ConceptDefinitionComponent cc = cs1.addConcept();
        cc.setCode(c2);
        cc.setDisplay(name);
        cc.setDefinition(desc);
        poplang(e, cc);
        if (c3 != null) {
            cc = cs1.addConcept();
            cc.setCode(c3);
            cc.setDisplay(name);
            cc.setDefinition(desc);
            cc.addProperty().setCode("canonical").setValue(new CodeType(c2));
            poplang(e, cc);
        }
        if (cN != null) {
            cc = cs1.addConcept();
            cc.setCode(cN);
            cc.setDisplay(name);
            cc.setDefinition(desc);
            cc.addProperty().setCode("canonical").setValue(new CodeType(c2));
            poplang(e, cc);
        }
        for (Element sd : XMLUtil.getNamedChildren(e, "subdivision")) {
            cc = cs2.addConcept();
            cc.setCode(XMLUtil.getNamedChildText(sd, "subdivision-code"));
            Element l = XMLUtil.getNamedChild(sd, "subdivision-locale");
            cc.setDisplay(XMLUtil.getNamedChildText(l, "subdivision-locale-name"));
            cc.addProperty().setCode("country").setValue(new CodeType(c2));
        }
    }
    cs1.setCount(cs1.getConcept().size());
    cs2.setCount(cs2.getConcept().size());
    throw new Error("Needs revisiting");
// new JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(dest, "4.0.1", "package", "CodeSstem-iso3166.json")), cs1);
// new JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(dest, "3.0.2", "package", "CodeSstem-iso3166.json")), cs1); // format hasn't changed
// new JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(dest, "4.0.1", "package", "CodeSstem-iso3166-2.json")), cs2);
// new JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(dest, "3.0.2", "package", "CodeSstem-iso3166-2.json")), cs2); // format hasn't changed
}

Example 30 with DOCUMENT

use of org.hl7.fhir.r4.model.Bundle.BundleType.DOCUMENT in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method generateDocumentNarrative.

public XhtmlNode generateDocumentNarrative(Bundle feed) {
    /*
     When the document is presented for human consumption, applications must present the collated narrative portions of the following resources in order:
     * The Composition resource
     * The Subject resource
     * Resources referenced in the section.content
     */
    XhtmlNode root = new XhtmlNode(NodeType.Element, "div");
    Composition comp = (Composition) feed.getEntry().get(0).getResource();
    root.getChildNodes().add(comp.getText().getDiv());
    Resource subject = ResourceUtilities.getById(feed, null, comp.getSubject().getReference());
    if (subject != null && subject instanceof DomainResource) {
        root.addTag("hr");
        root.getChildNodes().add(((DomainResource) subject).getText().getDiv());
    }
    List<SectionComponent> sections = comp.getSection();
    renderSections(feed, root, sections, 1);
    return root;
}