Examples with XmlGenerator org.hl7.fhir.utilities.xml.XmlGenerator used on opensource projects

Example 1 with XmlGenerator

use of org.hl7.fhir.utilities.xml.XmlGenerator in project kindling by HL7.

the class Publisher method produceProfile.

private void produceProfile(ResourceDefn resource, Profile pack, ConstraintStructure profile, SectionTracker st, String intro, String notes, String prefix, ImplementationGuideDefn ig) throws Exception {
    File tmp = Utilities.createTempFile("tmp", ".tmp");
    String title = profile.getId();
    int level = (ig == null || ig.isCore()) ? 0 : 1;
    // you have to validate a profile, because it has to be merged with it's
    // base resource to fill out all the missing bits
    // validateProfile(profile);
    ByteArrayOutputStream bs = new ByteArrayOutputStream();
    XmlSpecGenerator gen = new XmlSpecGenerator(bs, title + "-definitions.html", "", page, ig.isCore() ? "" : "../");
    gen.generate(profile.getResource());
    gen.close();
    String xml = new String(bs.toByteArray());
    bs = new ByteArrayOutputStream();
    JsonSpecGenerator genJ = new JsonSpecGenerator(bs, title + "-definitions.html", "", page, ig.isCore() ? "" : "../", page.getVersion().toCode());
    genJ.generate(profile.getResource());
    genJ.close();
    String json = new String(bs.toByteArray());
    XmlParser comp = new XmlParser();
    FileOutputStream s = new FileOutputStream(page.getFolders().dstDir + prefix + title + ".profile.xml");
    comp.setOutputStyle(OutputStyle.PRETTY).compose(s, profile.getResource());
    s.close();
    Utilities.copyFile(new CSFile(page.getFolders().dstDir + prefix + title + ".profile.xml"), new CSFile(page.getFolders().dstDir + "examples" + File.separator + title + ".profile.xml"));
    JsonParser jcomp = new JsonParser();
    s = new FileOutputStream(page.getFolders().dstDir + prefix + title + ".profile.json");
    jcomp.setOutputStyle(OutputStyle.PRETTY).compose(s, profile.getResource());
    s.close();
    // String shex = new ShExGenerator(page.getWorkerContext()).generate(HTMLLinkPolicy.NONE, profile.getResource());
    // TextFile.stringToFile(shex, Utilities.changeFileExt(page.getFolders().dstDir + prefix +title + ".profile.shex", ".shex"));
    // shexToXhtml(prefix +title + ".profile", "ShEx statement for " + prefix +title, shex, "profile-instance:type:" + title, "Type");
    TerminologyNotesGenerator tgen = new TerminologyNotesGenerator(new FileOutputStream(tmp), page);
    tgen.generate(level == 0 ? "" : "../", profile);
    tgen.close();
    String tx = TextFile.fileToString(tmp.getAbsolutePath());
    String src = TextFile.fileToString(page.getFolders().templateDir + "template-profile.html");
    src = page.processProfileIncludes(profile.getId(), profile.getId(), pack, profile, xml, json, tx, src, title + ".html", (resource == null ? profile.getResource().getType() : resource.getName()) + "/" + pack.getId() + "/" + profile.getId(), intro, notes, ig, false, false);
    if (st != null)
        src = insertSectionNumbers(src, st, title + ".html", level, null);
    else if (ig != null && !ig.isCore()) {
        src = addSectionNumbers(title + ".html", title, src, null, 1, null, ig);
        st = page.getSectionTrackerCache().get(ig.getCode() + "::" + title);
    }
    page.getHTMLChecker().registerFile(prefix + title + ".html", "StructureDefinition " + profile.getResource().getName(), HTMLLinkChecker.XHTML_TYPE, false);
    TextFile.stringToFile(src, page.getFolders().dstDir + prefix + title + ".html");
    new ProfileUtilities(page.getWorkerContext(), page.getValidationErrors(), page).generateSchematrons(new FileOutputStream(page.getFolders().dstDir + prefix + title + ".sch"), profile.getResource());
    if (pack.getExamples().size() > 0) {
        src = TextFile.fileToString(page.getFolders().templateDir + "template-profile-examples.html");
        src = page.processProfileIncludes(profile.getId(), profile.getId(), pack, profile, xml, json, tx, src, title + ".html", (resource == null ? profile.getResource().getType() : resource.getName()) + "/" + pack.getId() + "/" + profile.getId(), intro, notes, ig, false, false);
        page.getHTMLChecker().registerFile(prefix + title + "-examples.html", "Examples for StructureDefinition " + profile.getResource().getName(), HTMLLinkChecker.XHTML_TYPE, true);
        TextFile.stringToFile(src, page.getFolders().dstDir + prefix + title + "-examples.html");
    }
    src = TextFile.fileToString(page.getFolders().templateDir + "template-profile-definitions.html");
    src = page.processProfileIncludes(profile.getId(), profile.getId(), pack, profile, xml, json, tx, src, title + ".html", (resource == null ? profile.getResource().getType() : resource.getName()) + "/" + pack.getId() + "/" + profile.getId(), intro, notes, ig, false, false);
    if (st != null)
        src = insertSectionNumbers(src, st, title + "-definitions.html", level, null);
    page.getHTMLChecker().registerFile(prefix + title + "-definitions.html", "Definitions for StructureDefinition " + profile.getResource().getName(), HTMLLinkChecker.XHTML_TYPE, true);
    TextFile.stringToFile(src, page.getFolders().dstDir + prefix + title + "-definitions.html");
    src = TextFile.fileToString(page.getFolders().templateDir + "template-profile-mappings.html");
    src = page.processProfileIncludes(profile.getId(), profile.getId(), pack, profile, xml, json, tx, src, title + ".html", (resource == null ? profile.getResource().getType() : resource.getName()) + "/" + pack.getId() + "/" + profile.getId(), intro, notes, ig, false, false);
    if (st != null)
        src = insertSectionNumbers(src, st, title + "-mappings.html", level, null);
    page.getHTMLChecker().registerFile(prefix + title + "-mappings.html", "Mappings for StructureDefinition " + profile.getResource().getName(), HTMLLinkChecker.XHTML_TYPE, true);
    TextFile.stringToFile(src, page.getFolders().dstDir + prefix + title + "-mappings.html");
    try {
        processQuestionnaire(resource, profile.getResource(), st, false, prefix, ig);
    } catch (Exception e) {
        e.printStackTrace();
        page.log("Questionnaire Generation Failed: " + e.getMessage(), LogMessageType.Error);
    }
    new ReviewSpreadsheetGenerator().generate(page.getFolders().dstDir + prefix + Utilities.changeFileExt((String) profile.getResource().getUserData("filename"), "-review.xls"), "Health Level Seven International", page.getGenDate(), profile.getResource(), page);
    // xml to xhtml of xml
    // first pass is to strip the xsi: stuff. seems to need double
    // processing in order to delete namespace crap
    DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
    factory.setNamespaceAware(true);
    DocumentBuilder builder = factory.newDocumentBuilder();
    Document xdoc = builder.parse(new CSFileInputStream(page.getFolders().dstDir + prefix + title + ".profile.xml"));
    XmlGenerator xmlgen = new XmlGenerator();
    xmlgen.generate(xdoc.getDocumentElement(), tmp, "http://hl7.org/fhir", xdoc.getDocumentElement().getLocalName());
    // reload it now
    builder = factory.newDocumentBuilder();
    xdoc = builder.parse(new CSFileInputStream(tmp.getAbsolutePath()));
    XhtmlGenerator xhtml = new XhtmlGenerator(new ExampleAdorner(page.getDefinitions(), page.genlevel(level)));
    ByteArrayOutputStream b = new ByteArrayOutputStream();
    xhtml.generate(xdoc, b, "StructureDefinition", profile.getTitle(), 0, true, title + ".profile.xml.html");
    String html = TextFile.fileToString(page.getFolders().templateDir + "template-profile-example-xml.html").replace("<%example%>", b.toString());
    html = page.processProfileIncludes(title + ".profile.xml.html", profile.getId(), pack, profile, "", "", "", html, title + ".html", (resource == null ? profile.getResource().getType() : resource.getName()) + "/" + pack.getId() + "/" + profile.getId(), intro, notes, ig, false, hasNarrative(xdoc));
    TextFile.stringToFile(html, page.getFolders().dstDir + prefix + title + ".profile.xml.html");
    page.getHTMLChecker().registerFile(prefix + title + ".profile.xml.html", "StructureDefinition", HTMLLinkChecker.XHTML_TYPE, false);
    String n = prefix + title + ".profile";
    json = resource2Json(profile.getResource());
    json = "<div class=\"example\">\r\n<p>" + Utilities.escapeXml("StructureDefinition for " + profile.getResource().getDescription()) + "</p>\r\n<p><a href=\"" + title + ".profile.json\">Raw JSON</a></p>\r\n<pre class=\"json\">\r\n" + Utilities.escapeXml(json) + "\r\n</pre>\r\n</div>\r\n";
    html = TextFile.fileToString(page.getFolders().templateDir + "template-profile-example-json.html").replace("<%example%>", json);
    html = page.processProfileIncludes(title + ".profile.json.html", profile.getId(), pack, profile, "", "", "", html, title + ".html", (resource == null ? profile.getResource().getType() : resource.getName()) + "/" + pack.getId() + "/" + profile.getId(), intro, notes, ig, false, false);
    TextFile.stringToFile(html, page.getFolders().dstDir + prefix + title + ".profile.json.html");
    // page.getEpub().registerFile(n + ".json.html", description, EPubManager.XHTML_TYPE);
    page.getHTMLChecker().registerExternal(n + ".json.html");
    tmp.delete();
}

Example 2 with XmlGenerator

use of org.hl7.fhir.utilities.xml.XmlGenerator in project org.hl7.fhir.core by hapifhir.

the class DigitalSignatures method main.

public static void main(String[] args) throws SAXException, IOException, ParserConfigurationException, NoSuchAlgorithmException, InvalidAlgorithmParameterException, KeyException, MarshalException, XMLSignatureException, FHIRException {
    // http://docs.oracle.com/javase/7/docs/technotes/guides/security/xmldsig/XMLDigitalSignature.html
    // 
    byte[] inputXml = "<Envelope xmlns=\"urn:envelope\">\r\n</Envelope>\r\n".getBytes();
    // load the document that's going to be signed
    DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance();
    dbf.setNamespaceAware(true);
    DocumentBuilder builder = dbf.newDocumentBuilder();
    Document doc = builder.parse(new ByteArrayInputStream(inputXml));
    // create a key pair
    KeyPairGenerator kpg = KeyPairGenerator.getInstance("RSA");
    kpg.initialize(512);
    KeyPair kp = kpg.generateKeyPair();
    // sign the document
    DOMSignContext dsc = new DOMSignContext(kp.getPrivate(), doc.getDocumentElement());
    XMLSignatureFactory fac = XMLSignatureFactory.getInstance("DOM");
    Reference ref = fac.newReference("", fac.newDigestMethod(DigestMethod.SHA1, null), Collections.singletonList(fac.newTransform(Transform.ENVELOPED, (TransformParameterSpec) null)), null, null);
    SignedInfo si = fac.newSignedInfo(fac.newCanonicalizationMethod(CanonicalizationMethod.INCLUSIVE, (C14NMethodParameterSpec) null), fac.newSignatureMethod(SignatureMethod.RSA_SHA1, null), Collections.singletonList(ref));
    KeyInfoFactory kif = fac.getKeyInfoFactory();
    KeyValue kv = kif.newKeyValue(kp.getPublic());
    KeyInfo ki = kif.newKeyInfo(Collections.singletonList(kv));
    XMLSignature signature = fac.newXMLSignature(si, ki);
    signature.sign(dsc);
    OutputStream os = System.out;
    new XmlGenerator().generate(doc.getDocumentElement(), os);
}

Example 3 with XmlGenerator

use of org.hl7.fhir.utilities.xml.XmlGenerator in project org.hl7.fhir.core by hapifhir.

the class DigitalSignatures method main.

public static void main(String[] args) throws SAXException, IOException, ParserConfigurationException, NoSuchAlgorithmException, InvalidAlgorithmParameterException, KeyException, MarshalException, XMLSignatureException, FHIRException, org.hl7.fhir.exceptions.FHIRException {
    // http://docs.oracle.com/javase/7/docs/technotes/guides/security/xmldsig/XMLDigitalSignature.html
    // 
    byte[] inputXml = "<Envelope xmlns=\"urn:envelope\">\r\n</Envelope>\r\n".getBytes();
    // load the document that's going to be signed
    DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance();
    dbf.setNamespaceAware(true);
    DocumentBuilder builder = dbf.newDocumentBuilder();
    Document doc = builder.parse(new ByteArrayInputStream(inputXml));
    // create a key pair
    KeyPairGenerator kpg = KeyPairGenerator.getInstance("RSA");
    kpg.initialize(512);
    KeyPair kp = kpg.generateKeyPair();
    // sign the document
    DOMSignContext dsc = new DOMSignContext(kp.getPrivate(), doc.getDocumentElement());
    XMLSignatureFactory fac = XMLSignatureFactory.getInstance("DOM");
    Reference ref = fac.newReference("", fac.newDigestMethod(DigestMethod.SHA1, null), Collections.singletonList(fac.newTransform(Transform.ENVELOPED, (TransformParameterSpec) null)), null, null);
    SignedInfo si = fac.newSignedInfo(fac.newCanonicalizationMethod(CanonicalizationMethod.INCLUSIVE, (C14NMethodParameterSpec) null), fac.newSignatureMethod(SignatureMethod.RSA_SHA1, null), Collections.singletonList(ref));
    KeyInfoFactory kif = fac.getKeyInfoFactory();
    KeyValue kv = kif.newKeyValue(kp.getPublic());
    KeyInfo ki = kif.newKeyInfo(Collections.singletonList(kv));
    XMLSignature signature = fac.newXMLSignature(si, ki);
    signature.sign(dsc);
    OutputStream os = System.out;
    new XmlGenerator().generate(doc.getDocumentElement(), os);
}

Example 4 with XmlGenerator

use of org.hl7.fhir.utilities.xml.XmlGenerator in project org.hl7.fhir.core by hapifhir.

the class DigitalSignatures method main.

public static void main(String[] args) throws Exception {
    // http://docs.oracle.com/javase/7/docs/technotes/guides/security/xmldsig/XMLDigitalSignature.html
    // 
    byte[] inputXml = "<Envelope xmlns=\"urn:envelope\">\r\n</Envelope>\r\n".getBytes();
    // load the document that's going to be signed
    DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance();
    dbf.setNamespaceAware(true);
    DocumentBuilder builder = dbf.newDocumentBuilder();
    Document doc = builder.parse(new ByteArrayInputStream(inputXml));
    // // create a key pair
    // KeyPairGenerator kpg = KeyPairGenerator.getInstance("RSA");
    // kpg.initialize(512);
    // KeyPair kp = kpg.generateKeyPair();
    PublicKey pub = getPublicKey("C:\\work\\fhirserver\\tests\\signatures\\public_key.der");
    PrivateKey priv = getPrivateKey("C:\\work\\fhirserver\\tests\\signatures\\private_key.der");
    // sign the document
    DOMSignContext dsc = new DOMSignContext(priv, doc.getDocumentElement());
    XMLSignatureFactory fac = XMLSignatureFactory.getInstance("DOM");
    Reference ref = fac.newReference("", fac.newDigestMethod(DigestMethod.SHA1, null), Collections.singletonList(fac.newTransform(Transform.ENVELOPED, (TransformParameterSpec) null)), null, null);
    SignedInfo si = fac.newSignedInfo(fac.newCanonicalizationMethod(CanonicalizationMethod.INCLUSIVE, (C14NMethodParameterSpec) null), fac.newSignatureMethod(SignatureMethod.RSA_SHA1, null), Collections.singletonList(ref));
    KeyInfoFactory kif = fac.getKeyInfoFactory();
    KeyValue kv = kif.newKeyValue(pub);
    KeyInfo ki = kif.newKeyInfo(Collections.singletonList(kv));
    XMLSignature signature = fac.newXMLSignature(si, ki);
    signature.sign(dsc);
    OutputStream os = new FileOutputStream(Utilities.path("[tmp]", "java-digsig.xml"));
    new XmlGenerator().generate(doc.getDocumentElement(), os);
}

Example 5 with XmlGenerator

use of org.hl7.fhir.utilities.xml.XmlGenerator in project org.hl7.fhir.core by hapifhir.

the class DigitalSignatures method main.

public static void main(String[] args) throws Exception {
    // http://docs.oracle.com/javase/7/docs/technotes/guides/security/xmldsig/XMLDigitalSignature.html
    // 
    byte[] inputXml = "<Envelope xmlns=\"urn:envelope\">\r\n</Envelope>\r\n".getBytes();
    // load the document that's going to be signed
    DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance();
    dbf.setNamespaceAware(true);
    DocumentBuilder builder = dbf.newDocumentBuilder();
    Document doc = builder.parse(new ByteArrayInputStream(inputXml));
    // // create a key pair
    // KeyPairGenerator kpg = KeyPairGenerator.getInstance("RSA");
    // kpg.initialize(512);
    // KeyPair kp = kpg.generateKeyPair();
    PublicKey pub = getPublicKey("C:\\work\\fhirserver\\tests\\signatures\\public_key.der");
    PrivateKey priv = getPrivateKey("C:\\work\\fhirserver\\tests\\signatures\\private_key.der");
    // sign the document
    DOMSignContext dsc = new DOMSignContext(priv, doc.getDocumentElement());
    XMLSignatureFactory fac = XMLSignatureFactory.getInstance("DOM");
    Reference ref = fac.newReference("", fac.newDigestMethod(DigestMethod.SHA1, null), Collections.singletonList(fac.newTransform(Transform.ENVELOPED, (TransformParameterSpec) null)), null, null);
    SignedInfo si = fac.newSignedInfo(fac.newCanonicalizationMethod(CanonicalizationMethod.INCLUSIVE, (C14NMethodParameterSpec) null), fac.newSignatureMethod(SignatureMethod.RSA_SHA1, null), Collections.singletonList(ref));
    KeyInfoFactory kif = fac.getKeyInfoFactory();
    KeyValue kv = kif.newKeyValue(pub);
    KeyInfo ki = kif.newKeyInfo(Collections.singletonList(kv));
    XMLSignature signature = fac.newXMLSignature(si, ki);
    signature.sign(dsc);
    OutputStream os = new FileOutputStream(Utilities.path("[tmp]", "java-digsig.xml"));
    new XmlGenerator().generate(doc.getDocumentElement(), os);
}