Search in sources :

Example 1 with IniFile

use of org.hl7.fhir.utilities.IniFile in project kindling by HL7.

the class Publisher method execute.

/**
 * Entry point to the publisher. This classes Java Main() calls this function
 * to actually produce the specification
 *
 * @param folder
 * @throws IOException
 */
public void execute(String folder) throws IOException {
    tester = new PublisherTestSuites();
    page.log("Publish FHIR in folder " + folder + " @ " + Config.DATE_FORMAT().format(page.getGenDate().getTime()), LogMessageType.Process);
    if (web)
        page.log("Build final copy for HL7 web site", LogMessageType.Process);
    else
        page.log("Build local copy", LogMessageType.Process);
    if (outputdir != null) {
        page.log("Create output in " + outputdir, LogMessageType.Process);
    }
    page.log("Detected Java version: " + System.getProperty("java.version") + " from " + System.getProperty("java.home") + " on " + System.getProperty("os.arch"), LogMessageType.Process);
    try {
        tester.initialTests();
        page.setFolders(new FolderManager(folder, outputdir));
        if (!initialize(folder))
            throw new Exception("Unable to publish as preconditions aren't met");
        cache = new IniFile(page.getFolders().rootDir + "temp" + File.separator + "build.cache");
        loadSuppressedMessages(page.getFolders().rootDir);
        boolean doAny = false;
        for (String n : dates.keySet()) {
            Long d = cache.getLongProperty("dates", n);
            boolean b = d == null || (dates.get(n) > d);
            cache.setLongProperty("dates", n, dates.get(n).longValue(), null);
            buildFlags.put(n.toLowerCase(), b);
            doAny = doAny || b;
        }
        cache.save();
        if (noPartialBuild || !doAny || !(new File(page.getFolders().dstDir + "qa.html").exists()))
            // nothing - build all
            buildFlags.put("all", true);
        if (singlePage != null) {
            for (String n : buildFlags.keySet()) buildFlags.put(n, false);
            buildFlags.put("page-" + singlePage.toLowerCase(), true);
        } else if (singleResource != null) {
            for (String n : buildFlags.keySet()) buildFlags.put(n, false);
            buildFlags.put(singleResource.toLowerCase(), true);
        }
        if (!buildFlags.get("all")) {
            if (!noSound) {
                AudioUtilities.tone(1000, 10);
                AudioUtilities.tone(1400, 10);
                AudioUtilities.tone(1800, 10);
                AudioUtilities.tone(1000, 10);
                AudioUtilities.tone(1400, 10);
                AudioUtilities.tone(1800, 10);
            }
            page.log("Partial Build (if you want a full build, just run the build again)", LogMessageType.Process);
            CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
            for (String n : buildFlags.keySet()) if (buildFlags.get(n))
                b.append(n);
            page.log("  Build: " + b.toString(), LogMessageType.Process);
        } else {
            if (!noSound)
                AudioUtilities.tone(1200, 30);
            page.log("Full Build", LogMessageType.Process);
        }
        if (isGenerate && page.getBuildId() == null)
            page.setBuildId(getGitBuildId());
        page.log("Version " + page.getVersion() + "-" + page.getBuildId(), LogMessageType.Hint);
        Utilities.createDirectory(page.getFolders().dstDir);
        Utilities.deleteTempFiles();
        page.getBreadCrumbManager().parse(page.getFolders().srcDir + "hierarchy.xml");
        page.loadSnomed();
        page.loadLoinc();
        page.loadUcum();
        buildFeedsAndMaps();
        prsr.setExternals(externals);
        prsr.parse(page.getGenDate(), page.getValidationErrors());
        for (String n : page.getDefinitions().sortedResourceNames()) if (!page.getBreadCrumbManager().knowsResource(n))
            page.getValidationErrors().add(new ValidationMessage(Source.Publisher, IssueType.INVALID, -1, -1, "hierarchy.xml", "Resource not found: " + n, IssueSeverity.ERROR));
        for (String n : prsr.getErrors()) page.getValidationErrors().add(new ValidationMessage(Source.Publisher, IssueType.INVALID, -1, -1, "source spreadsheets", n, IssueSeverity.ERROR));
        if (web) {
            page.log("Clear Directory", LogMessageType.Process);
            Utilities.clearDirectory(page.getFolders().dstDir);
        }
        if (web || (isGenerate && buildFlags.get("all"))) {
            Utilities.createDirectory(page.getFolders().dstDir + "html");
            Utilities.createDirectory(page.getFolders().dstDir + "examples");
        }
        for (ImplementationGuideDefn ig : page.getDefinitions().getSortedIgs()) if (!ig.isCore())
            Utilities.createDirectory(page.getFolders().dstDir + ig.getCode());
        if (buildFlags.get("all")) {
            copyStaticContent();
        }
        page.makeRenderingContext();
        loadValueSets1();
        prsr.getRegistry().commit();
        generateSCMaps();
        validate();
        processProfiles();
        checkAllOk();
        if (isGenerate) {
            produceSpecification();
            checkAllOk();
        }
        if (doValidate)
            validationProcess();
        page.saveSnomed();
        page.getWorkerContext().saveCache();
        processWarnings(false);
        if (isGenerate && buildFlags.get("all"))
            produceQA();
        if (!buildFlags.get("all")) {
            page.log("This was a Partial Build", LogMessageType.Process);
            CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
            for (String n : buildFlags.keySet()) if (buildFlags.get(n))
                b.append(n);
            page.log("  Build: " + b.toString(), LogMessageType.Process);
        } else
            page.log("This was a Full Build", LogMessageType.Process);
        if (!noSound) {
            AudioUtilities.tone(800, 10);
            AudioUtilities.tone(1000, 10);
            AudioUtilities.tone(1200, 10);
            AudioUtilities.tone(1000, 10);
            AudioUtilities.tone(800, 10);
        }
        page.log("Finished publishing FHIR @ " + Config.DATE_FORMAT().format(Calendar.getInstance().getTime()), LogMessageType.Process);
    } catch (Exception e) {
        if (!(e instanceof NullPointerException)) {
            // because NullPointerException is unexpected...
            try {
                processWarnings(e instanceof EValidationFailed);
            } catch (Exception e2) {
                page.log("  ERROR: Unable to process warnings: " + e2.getMessage(), LogMessageType.Error);
                e2.printStackTrace();
            }
        }
        if (buildFlags.containsKey("all") && !buildFlags.get("all")) {
            page.log("This was a Partial Build", LogMessageType.Process);
            CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
            for (String n : buildFlags.keySet()) if (buildFlags.get(n))
                b.append(n);
            page.log("  Build: " + b.toString(), LogMessageType.Process);
        } else
            page.log("This was a Full Build", LogMessageType.Process);
        if (!noSound) {
            AudioUtilities.tone(800, 20);
            AudioUtilities.tone(1000, 20);
            AudioUtilities.tone(1200, 20);
        }
        try {
            Thread.sleep(50);
        } catch (InterruptedException e1) {
        }
        if (!noSound) {
            AudioUtilities.tone(800, 20);
            AudioUtilities.tone(1000, 20);
            AudioUtilities.tone(1200, 20);
        }
        try {
            Thread.sleep(50);
        } catch (InterruptedException e1) {
        }
        if (!noSound) {
            AudioUtilities.tone(800, 20);
            AudioUtilities.tone(1000, 20);
            AudioUtilities.tone(1200, 20);
        }
        page.log("FHIR build failure @ " + Config.DATE_FORMAT().format(Calendar.getInstance().getTime()), LogMessageType.Process);
        System.out.println("Error: " + e.getMessage());
        e.printStackTrace();
        TextFile.stringToFile(StringUtils.defaultString(e.getMessage()), Utilities.path(folder, "publish", "simple-error.txt"));
        System.exit(1);
    }
}
Also used : ValidationMessage(org.hl7.fhir.utilities.validation.ValidationMessage) IniFile(org.hl7.fhir.utilities.IniFile) CommaSeparatedStringBuilder(org.hl7.fhir.utilities.CommaSeparatedStringBuilder) ImplementationGuideDefn(org.hl7.fhir.definitions.model.ImplementationGuideDefn) TransformerException(javax.xml.transform.TransformerException) IOException(java.io.IOException) FHIRException(org.hl7.fhir.exceptions.FHIRException) FileNotFoundException(java.io.FileNotFoundException) UnsupportedEncodingException(java.io.UnsupportedEncodingException) EValidationFailed(org.hl7.fhir.tools.publisher.ExampleInspector.EValidationFailed) IniFile(org.hl7.fhir.utilities.IniFile) File(java.io.File) CSFile(org.hl7.fhir.utilities.CSFile) TextFile(org.hl7.fhir.utilities.TextFile)

Example 2 with IniFile

use of org.hl7.fhir.utilities.IniFile in project kindling by HL7.

the class PageProcessor method makeArchives.

private String makeArchives() throws Exception {
    IniFile ini = new IniFile(folders.rootDir + "publish.ini");
    StringBuilder s = new StringBuilder();
    s.append("<h2>Archived Versions of FHIR</h2>");
    s.append("<p>These archives only keep the more significant past versions of FHIR, and only the book form, and are provided for purposes of supporting html diff tools. A full archive history of everything is available <a href=\"http://wiki.hl7.org/index.php?title=FHIR\">through the HL7 gForge archives</a>.</p>");
    s.append("<ul>");
    if (ini.getPropertyNames("Archives") != null) {
        for (String v : ini.getPropertyNames("Archives")) {
            s.append("<li><a href=\"http://www.hl7.org/implement/standards/FHIR/v").append(v).append("/index.htm\">Version ").append(v).append("</a>, ").append(ini.getStringProperty("Archives", v)).append("</li>");
            if (!definitions.getPastVersions().contains(v))
                definitions.getPastVersions().add(v);
        }
    }
    s.append("</ul>");
    return s.toString();
}
Also used : CommaSeparatedStringBuilder(org.hl7.fhir.utilities.CommaSeparatedStringBuilder) IniFile(org.hl7.fhir.utilities.IniFile)

Example 3 with IniFile

use of org.hl7.fhir.utilities.IniFile in project kindling by HL7.

the class PageProcessor method expandVS.

public String expandVS(ValueSet vs, String prefix, String base) {
    try {
        ValueSetExpansionOutcome result = workerContext.expandVS(vs, true, true);
        if (result.getError() != null)
            return "<hr/>\r\n" + VS_INC_START + "<!--3-->" + processExpansionError(result.getError()) + VS_INC_END;
        if (result.getValueset() == null)
            return "<hr/>\r\n" + VS_INC_START + "<!--4-->" + processExpansionError("(no error returned)") + VS_INC_END;
        ValueSet exp = result.getValueset();
        if (exp == vs)
            throw new Exception("Expansion cannot be the same instance");
        exp.setCompose(null);
        exp.setText(null);
        exp.setDescription("Value Set Contents (Expansion) for " + vs.present() + " at " + Config.DATE_FORMAT().format(new Date()));
        int i = countContains(exp.getExpansion().getContains());
        IniFile sini = new IniFile(Utilities.path(folders.rootDir, "temp", "stats.ini"));
        sini.setIntegerProperty("valuesets", vs.getId(), i, null);
        sini.save();
        RenderingContext lrc = rc.copy().setLocalPrefix(prefix).setTooCostlyNoteEmpty(TOO_MANY_CODES_TEXT_EMPTY).setTooCostlyNoteNotEmpty(TOO_MANY_CODES_TEXT_NOT_EMPTY);
        RendererFactory.factory(exp, lrc).render(exp);
        return "<hr/>\r\n" + VS_INC_START + "" + new XhtmlComposer(XhtmlComposer.HTML).compose(exp.getText().getDiv()) + VS_INC_END;
    } catch (Exception e) {
        e.printStackTrace();
        return "<hr/>\r\n" + VS_INC_START + "<!--5-->" + processExpansionError(e instanceof NullPointerException ? "NullPointerException" : e.getMessage()) + " " + Utilities.escapeXml(stack(e)) + VS_INC_END;
    }
}
Also used : RenderingContext(org.hl7.fhir.r5.renderers.utils.RenderingContext) IniFile(org.hl7.fhir.utilities.IniFile) XhtmlComposer(org.hl7.fhir.utilities.xhtml.XhtmlComposer) ValueSetExpansionOutcome(org.hl7.fhir.r5.terminologies.ValueSetExpander.ValueSetExpansionOutcome) ValueSet(org.hl7.fhir.r5.model.ValueSet) UcumException(org.fhir.ucum.UcumException) TransformerException(javax.xml.transform.TransformerException) TransformerConfigurationException(javax.xml.transform.TransformerConfigurationException) IOException(java.io.IOException) FHIRException(org.hl7.fhir.exceptions.FHIRException) URISyntaxException(java.net.URISyntaxException) PathEngineException(org.hl7.fhir.exceptions.PathEngineException) DefinitionException(org.hl7.fhir.exceptions.DefinitionException) FileNotFoundException(java.io.FileNotFoundException) NotImplementedException(org.apache.commons.lang3.NotImplementedException) Date(java.util.Date) ContactPoint(org.hl7.fhir.r5.model.ContactPoint)

Example 4 with IniFile

use of org.hl7.fhir.utilities.IniFile in project kindling by HL7.

the class SpecNPMPackageGenerator method determineVersion.

private FHIRVersion determineVersion(Map<String, byte[]> files) throws FHIRException {
    byte[] b = files.get("version.info");
    if (b == null)
        return FHIRVersion.NULL;
    String s = new String(b);
    s = Utilities.stripBOM(s).trim();
    while (s.charAt(0) != '[') s = s.substring(1);
    byte[] bytes = {};
    try {
        bytes = s.getBytes("UTF-8");
    } catch (UnsupportedEncodingException e) {
    }
    ByteArrayInputStream bs = new ByteArrayInputStream(bytes);
    IniFile ini = new IniFile(bs);
    String v = ini.getStringProperty("FHIR", "version");
    if (v == null)
        throw new Error("unable to determine version from " + new String(bytes));
    if ("3.0.0".equals(v))
        v = "3.0.1";
    return FHIRVersion.fromCode(v);
}
Also used : ByteArrayInputStream(java.io.ByteArrayInputStream) IniFile(org.hl7.fhir.utilities.IniFile) UnsupportedEncodingException(java.io.UnsupportedEncodingException) FHIRFormatError(org.hl7.fhir.exceptions.FHIRFormatError)

Example 5 with IniFile

use of org.hl7.fhir.utilities.IniFile in project kindling by HL7.

the class SourceParser method loadW5s.

private void loadW5s() throws IOException {
    if (new File(Utilities.path(srcDir, "w5.ini")).exists()) {
        IniFile w5 = new IniFile(Utilities.path(srcDir, "w5.ini"));
        for (String n : w5.getPropertyNames("names")) {
            W5Entry w5o = new W5Entry(n, w5.getStringProperty("names", n), w5.getBooleanProperty("display", n), w5.getStringProperty("subclasses", n), w5.getStringProperty("fivews", n));
            definitions.getW5list().add(w5o);
            definitions.getW5s().put(n, w5o);
        }
    }
}
Also used : IniFile(org.hl7.fhir.utilities.IniFile) W5Entry(org.hl7.fhir.definitions.model.W5Entry) IniFile(org.hl7.fhir.utilities.IniFile) File(java.io.File) CSFile(org.hl7.fhir.utilities.CSFile) TextFile(org.hl7.fhir.utilities.TextFile)

Aggregations

IniFile (org.hl7.fhir.utilities.IniFile)27 File (java.io.File)16 TextFile (org.hl7.fhir.utilities.TextFile)12 ArrayList (java.util.ArrayList)7 CSFile (org.hl7.fhir.utilities.CSFile)6 FileNotFoundException (java.io.FileNotFoundException)5 IOException (java.io.IOException)5 Date (java.util.Date)5 ResourceDefn (org.hl7.fhir.definitions.model.ResourceDefn)5 FileInputStream (java.io.FileInputStream)4 FHIRException (org.hl7.fhir.exceptions.FHIRException)4 CommaSeparatedStringBuilder (org.hl7.fhir.utilities.CommaSeparatedStringBuilder)4 RandomAccessFile (java.io.RandomAccessFile)3 StructureDefinition (org.hl7.fhir.r5.model.StructureDefinition)3 JsonObject (com.google.gson.JsonObject)2 ByteArrayInputStream (java.io.ByteArrayInputStream)2 ByteArrayOutputStream (java.io.ByteArrayOutputStream)2 FileOutputStream (java.io.FileOutputStream)2 UnsupportedEncodingException (java.io.UnsupportedEncodingException)2 ParseException (java.text.ParseException)2