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Example 26 with CarePlan

use of org.hl7.fhir.r4.model.CarePlan in project synthea by synthetichealth.

the class FhirStu3 method convertToFHIR.

/**
 * Convert the given Person into a FHIR Bundle, containing the Patient and the
 * associated entries from their health record.
 *
 * @param person Person to generate the FHIR from
 * @param stopTime Time the simulation ended
 * @return FHIR Bundle containing the Person's health record.
 */
public static Bundle convertToFHIR(Person person, long stopTime) {
    Bundle bundle = new Bundle();
    if (TRANSACTION_BUNDLE) {
        bundle.setType(BundleType.TRANSACTION);
    } else {
        bundle.setType(BundleType.COLLECTION);
    }
    BundleEntryComponent personEntry = basicInfo(person, bundle, stopTime);
    for (Encounter encounter : person.record.encounters) {
        BundleEntryComponent encounterEntry = encounter(person, personEntry, bundle, encounter);
        for (HealthRecord.Entry condition : encounter.conditions) {
            condition(person, personEntry, bundle, encounterEntry, condition);
        }
        for (HealthRecord.Entry allergy : encounter.allergies) {
            allergy(person, personEntry, bundle, encounterEntry, allergy);
        }
        for (Observation observation : encounter.observations) {
            // Observation resources in stu3 don't support Attachments
            if (observation.value instanceof Attachment) {
                media(person, personEntry, bundle, encounterEntry, observation);
            } else {
                observation(person, personEntry, bundle, encounterEntry, observation);
            }
        }
        for (Procedure procedure : encounter.procedures) {
            procedure(person, personEntry, bundle, encounterEntry, procedure);
        }
        for (Medication medication : encounter.medications) {
            medication(person, personEntry, bundle, encounterEntry, medication);
        }
        for (HealthRecord.Entry immunization : encounter.immunizations) {
            immunization(person, personEntry, bundle, encounterEntry, immunization);
        }
        for (Report report : encounter.reports) {
            report(person, personEntry, bundle, encounterEntry, report);
        }
        for (CarePlan careplan : encounter.careplans) {
            careplan(person, personEntry, bundle, encounterEntry, careplan);
        }
        for (ImagingStudy imagingStudy : encounter.imagingStudies) {
            imagingStudy(person, personEntry, bundle, encounterEntry, imagingStudy);
        }
        for (HealthRecord.Device device : encounter.devices) {
            device(person, personEntry, bundle, device);
        }
        for (HealthRecord.Supply supply : encounter.supplies) {
            supplyDelivery(person, personEntry, bundle, supply, encounter);
        }
        // one claim per encounter
        BundleEntryComponent encounterClaim = encounterClaim(person, personEntry, bundle, encounterEntry, encounter.claim);
        explanationOfBenefit(personEntry, bundle, encounterEntry, person, encounterClaim, encounter);
    }
    return bundle;
}
Also used : DiagnosticReport(org.hl7.fhir.dstu3.model.DiagnosticReport) Report(org.mitre.synthea.world.concepts.HealthRecord.Report) Bundle(org.hl7.fhir.dstu3.model.Bundle) ImagingStudy(org.mitre.synthea.world.concepts.HealthRecord.ImagingStudy) Attachment(org.mitre.synthea.engine.Components.Attachment) HealthRecord(org.mitre.synthea.world.concepts.HealthRecord) CarePlan(org.mitre.synthea.world.concepts.HealthRecord.CarePlan) BundleEntryComponent(org.hl7.fhir.dstu3.model.Bundle.BundleEntryComponent) Observation(org.mitre.synthea.world.concepts.HealthRecord.Observation) Medication(org.mitre.synthea.world.concepts.HealthRecord.Medication) Encounter(org.mitre.synthea.world.concepts.HealthRecord.Encounter) Procedure(org.mitre.synthea.world.concepts.HealthRecord.Procedure)

Example 27 with CarePlan

use of org.hl7.fhir.r4.model.CarePlan in project cqf-ruler by DBCG.

the class Session method resolveActions.

private CarePlan resolveActions(Session session, RequestDetails theRequest) {
    RequestGroup theRequestGroup = session.getRequestGroupBuilder().build();
    for (PlanDefinition.PlanDefinitionActionComponent action : session.getPlanDefinition().getAction()) {
        // TODO - Apply input/output dataRequirements?
        if (meetsConditions(session, action, theRequest)) {
            Resource result = resolveDefinition(session, action, theRequest);
            RequestGroupActionComponent currentActionTarget = null;
            if (result != null) {
                currentActionTarget = new RequestGroupActionBuilder().buildResource(new Reference("#" + result.getId())).build();
                session.getRequestGroupBuilder().buildContained(result).addAction(currentActionTarget);
            }
            resolveDynamicActions(session, action, currentActionTarget, theRequest);
        }
    }
    if (theRequestGroup.getId() == null) {
        theRequestGroup.setId(UUID.randomUUID().toString());
    }
    session.getCarePlanBuilder().buildContained(theRequestGroup).buildActivity(new CarePlanActivityBuilder().buildReference(new Reference("#" + theRequestGroup.getId())).build());
    return session.getCarePlan();
}
Also used : RequestGroupActionComponent(org.hl7.fhir.r4.model.RequestGroup.RequestGroupActionComponent) RequestGroupActionBuilder(org.opencds.cqf.ruler.cr.r4.builder.RequestGroupActionBuilder) RequestGroup(org.hl7.fhir.r4.model.RequestGroup) Reference(org.hl7.fhir.r4.model.Reference) Resource(org.hl7.fhir.r4.model.Resource) DomainResource(org.hl7.fhir.r4.model.DomainResource) PlanDefinition(org.hl7.fhir.r4.model.PlanDefinition) CarePlanActivityBuilder(org.opencds.cqf.ruler.cr.r4.builder.CarePlanActivityBuilder)

Example 28 with CarePlan

use of org.hl7.fhir.r4.model.CarePlan in project cqf-ruler by DBCG.

the class Session method resolveCdsHooksPlanDefinition.

// For library use
public CarePlan resolveCdsHooksPlanDefinition(Context context, PlanDefinition planDefinition, String patientId, RequestDetails theRequest) {
    CarePlanBuilder carePlanBuilder = new CarePlanBuilder();
    RequestGroupBuilder requestGroupBuilder = new RequestGroupBuilder().buildStatus().buildIntent();
    // links
    if (planDefinition.hasRelatedArtifact()) {
        List<Extension> extensions = new ArrayList<>();
        for (RelatedArtifact relatedArtifact : planDefinition.getRelatedArtifact()) {
            AttachmentBuilder attachmentBuilder = new AttachmentBuilder();
            ExtensionBuilder extensionBuilder = new ExtensionBuilder();
            if (relatedArtifact.hasDisplay()) {
                // label
                attachmentBuilder.buildTitle(relatedArtifact.getDisplay());
            }
            if (relatedArtifact.hasUrl()) {
                // url
                attachmentBuilder.buildUrl(relatedArtifact.getUrl());
            }
            if (relatedArtifact.hasExtension()) {
                // type
                attachmentBuilder.buildExtension(relatedArtifact.getExtension());
            }
            extensionBuilder.buildUrl("http://example.org");
            extensionBuilder.buildValue(attachmentBuilder.build());
            extensions.add(extensionBuilder.build());
        }
        requestGroupBuilder.buildExtension(extensions);
    }
    resolveActions(planDefinition.getAction(), context, patientId, requestGroupBuilder, new ArrayList<>(), theRequest);
    CarePlanActivityBuilder carePlanActivityBuilder = new CarePlanActivityBuilder();
    carePlanActivityBuilder.buildReferenceTarget(requestGroupBuilder.build());
    carePlanBuilder.buildActivity(carePlanActivityBuilder.build());
    return carePlanBuilder.build();
}
Also used : Extension(org.hl7.fhir.r4.model.Extension) AttachmentBuilder(org.opencds.cqf.ruler.cr.r4.builder.AttachmentBuilder) CarePlanBuilder(org.opencds.cqf.ruler.cr.r4.builder.CarePlanBuilder) RequestGroupBuilder(org.opencds.cqf.ruler.cr.r4.builder.RequestGroupBuilder) ArrayList(java.util.ArrayList) ExtensionBuilder(org.opencds.cqf.ruler.cr.r4.builder.ExtensionBuilder) RelatedArtifact(org.hl7.fhir.r4.model.RelatedArtifact) CarePlanActivityBuilder(org.opencds.cqf.ruler.cr.r4.builder.CarePlanActivityBuilder)

Example 29 with CarePlan

use of org.hl7.fhir.r4.model.CarePlan in project cqf-ruler by DBCG.

the class Session method resolveDefinition.

private Resource resolveDefinition(Session session, PlanDefinition.PlanDefinitionActionComponent action, RequestDetails theRequest) {
    Resource result = null;
    if (action.hasDefinition()) {
        logger.debug("Resolving definition: {}", action.getDefinitionCanonicalType().getValue());
        String definition = action.getDefinitionCanonicalType().getValue();
        if (definition.contains(session.getPlanDefinition().fhirType())) {
            IdType id = new IdType(definition);
            CarePlan plan;
            try {
                plan = applyPlanDefinition(theRequest, id, session.getPatientId(), session.getEncounterId(), session.getPractitionerId(), session.getOrganizationId(), session.getUserType(), session.getUserLanguage(), session.getUserTaskContext(), session.getSetting(), session.getSettingContext());
                if (plan.getId() == null) {
                    plan.setId(UUID.randomUUID().toString());
                }
                for (CanonicalType c : plan.getInstantiatesCanonical()) {
                    session.getCarePlanBuilder().buildInstantiatesCanonical(c.getValueAsString());
                }
                result = plan;
            } catch (IOException e) {
                e.printStackTrace();
                logger.error("nested plan failed");
            }
        } else {
            try {
                if (action.getDefinitionCanonicalType().getValue().startsWith("#")) {
                    result = this.activityDefinitionApplyProvider.resolveActivityDefinition((ActivityDefinition) resolveContained(session.getPlanDefinition(), action.getDefinitionCanonicalType().getValue()), session.getPatientId(), session.getPractitionerId(), session.getOrganizationId(), theRequest);
                } else {
                    result = this.activityDefinitionApplyProvider.apply(theRequest, new IdType(CanonicalHelper.getId(action.getDefinitionCanonicalType())), session.getPatientId(), session.getEncounterId(), session.getPractitionerId(), session.getOrganizationId(), null, session.getUserLanguage(), session.getUserTaskContext(), session.getSetting(), session.getSettingContext());
                }
                if (result.getId() == null) {
                    logger.warn("ActivityDefinition {} returned resource with no id, setting one", action.getDefinitionCanonicalType().getId());
                    result.setId(UUID.randomUUID().toString());
                }
            } catch (Exception e) {
                logger.error("ERROR: ActivityDefinition {} could not be applied and threw exception {}", action.getDefinition(), e.toString());
            }
        }
    }
    return result;
}
Also used : CarePlan(org.hl7.fhir.r4.model.CarePlan) Resource(org.hl7.fhir.r4.model.Resource) DomainResource(org.hl7.fhir.r4.model.DomainResource) IOException(java.io.IOException) CanonicalType(org.hl7.fhir.r4.model.CanonicalType) IOException(java.io.IOException) FHIRException(org.hl7.fhir.exceptions.FHIRException) IdType(org.hl7.fhir.r4.model.IdType) ActivityDefinition(org.hl7.fhir.r4.model.ActivityDefinition)

Example 30 with CarePlan

use of org.hl7.fhir.r4.model.CarePlan in project cqf-ruler by DBCG.

the class STU3CarePlanToCdsCard method convert.

public static List<CdsCard> convert(CarePlan carePlan) {
    List<CdsCard> cards = new ArrayList<>();
    for (CarePlan.CarePlanActivityComponent activity : carePlan.getActivity()) {
        if (activity.getReferenceTarget() != null && activity.getReferenceTarget() instanceof RequestGroup) {
            RequestGroup requestGroup = (RequestGroup) activity.getReferenceTarget();
            cards = convert(requestGroup);
        }
    }
    return cards;
}
Also used : CarePlan(org.hl7.fhir.dstu3.model.CarePlan) RequestGroup(org.hl7.fhir.dstu3.model.RequestGroup) ArrayList(java.util.ArrayList)

Aggregations

Test (org.junit.jupiter.api.Test)14 Turtle (org.hl7.fhir.dstu3.utils.formats.Turtle)10 CarePlan (org.hl7.fhir.dstu3.model.CarePlan)8 Reference (org.hl7.fhir.dstu3.model.Reference)7 ArrayList (java.util.ArrayList)6 Complex (org.hl7.fhir.dstu2016may.formats.RdfGenerator.Complex)5 Reference (org.hl7.fhir.r4.model.Reference)4 Date (java.util.Date)3 Composition (org.hl7.fhir.dstu3.model.Composition)3 DomainResource (org.hl7.fhir.dstu3.model.DomainResource)3 Encounter (org.hl7.fhir.dstu3.model.Encounter)3 Complex (org.hl7.fhir.dstu3.utils.formats.Turtle.Complex)3 CarePlan (org.hl7.fhir.r4.model.CarePlan)3 CarePlan (org.mitre.synthea.world.concepts.HealthRecord.CarePlan)3 SystemRequestDetails (ca.uhn.fhir.jpa.partition.SystemRequestDetails)2 Operation (ca.uhn.fhir.rest.annotation.Operation)2 JsonObject (com.google.gson.JsonObject)2 IOException (java.io.IOException)2 Bundle (org.hl7.fhir.dstu3.model.Bundle)2 BundleEntryComponent (org.hl7.fhir.dstu3.model.Bundle.BundleEntryComponent)2