Examples with DiagnosticReport org.hl7.fhir.r4.model.DiagnosticReport used on opensource projects

Example 11 with DiagnosticReport

use of org.hl7.fhir.r4.model.DiagnosticReport in project cqf-ruler by DBCG.

the class ActivityDefinitionApplyProvider method resolveActivityDefinition.

// For library use
public Resource resolveActivityDefinition(ActivityDefinition activityDefinition, String patientId, String practitionerId, String organizationId, RequestDetails theRequest) throws FHIRException {
    Resource result = newResource(activityDefinition.getKind().toCode());
    switch(result.fhirType()) {
        case "ServiceRequest":
            result = resolveServiceRequest(activityDefinition, patientId, practitionerId, organizationId);
            break;
        case "MedicationRequest":
            result = resolveMedicationRequest(activityDefinition, patientId);
            break;
        case "SupplyRequest":
            result = resolveSupplyRequest(activityDefinition, practitionerId, organizationId);
            break;
        case "Procedure":
            result = resolveProcedure(activityDefinition, patientId);
            break;
        case "DiagnosticReport":
            result = resolveDiagnosticReport(activityDefinition, patientId);
            break;
        case "Communication":
            result = resolveCommunication(activityDefinition, patientId);
            break;
        case "CommunicationRequest":
            result = resolveCommunicationRequest(activityDefinition, patientId);
            break;
        case "Task":
            result = resolveTask(activityDefinition, patientId);
            break;
    }
    for (ActivityDefinition.ActivityDefinitionDynamicValueComponent dynamicValue : activityDefinition.getDynamicValue()) {
        // ActivityDefinition apply operation does not fail.
        try {
            if (dynamicValue.getExpression() != null) {
                // Special case for setting a Patient reference
                if ("Patient".equals(dynamicValue.getExpression().getExpression())) {
                    this.modelResolver.setValue(result, dynamicValue.getPath(), new Reference(patientId));
                } else {
                    /*
						 * TODO: Passing the activityDefinition as context here because that's what will
						 * have the libraries, but perhaps the "context" here should be the result
						 * resource?
						 */
                    Object value = expressionEvaluation.evaluateInContext(activityDefinition, dynamicValue.getExpression().getExpression(), patientId, theRequest);
                    if (value != null) {
                        logger.debug("dynamicValue value: {}", value);
                        if (value instanceof Boolean) {
                            value = new BooleanType((Boolean) value);
                        } else if (value instanceof DateTime) {
                            value = Date.from(((DateTime) value).getDateTime().toInstant());
                        } else if (value instanceof String) {
                            value = new StringType((String) value);
                        }
                        this.modelResolver.setValue(result, dynamicValue.getPath(), value);
                    } else {
                        logger.warn("WARNING: ActivityDefinition has null value for path: {}", dynamicValue.getPath());
                    }
                }
            }
        } catch (Exception e) {
            logger.error("ERROR: ActivityDefinition dynamicValue {} could not be applied and threw exception {}", dynamicValue.getPath(), e.toString());
            logger.error(e.toString());
        }
    }
    return result;
}

Example 12 with DiagnosticReport

use of org.hl7.fhir.r4.model.DiagnosticReport in project openmrs-module-fhir2 by openmrs.

the class DiagnosticReportSearchQueryTest method searchForDiagnosticReports_shouldReturnEmptyCollectionByWrongObsResult.

@Test
public void searchForDiagnosticReports_shouldReturnEmptyCollectionByWrongObsResult() {
    ReferenceAndListParam param = new ReferenceAndListParam().addAnd(new ReferenceOrListParam().add(new ReferenceParam(DIAGNOSTIC_REPORT_UUID)));
    SearchParameterMap theParams = new SearchParameterMap().addParameter(FhirConstants.RESULT_SEARCH_HANDLER, param);
    IBundleProvider diagnosticReports = search(theParams);
    assertThat(diagnosticReports, notNullValue());
    assertThat(diagnosticReports.size(), equalTo(0));
    List<DiagnosticReport> resultList = get(diagnosticReports);
    assertThat(diagnosticReports, notNullValue());
    assertThat(resultList.size(), equalTo(0));
}

Example 13 with DiagnosticReport

use of org.hl7.fhir.r4.model.DiagnosticReport in project openmrs-module-fhir2 by openmrs.

the class DiagnosticReportSearchQueryTest method searchForDiagnosticReports_shouldReturnEmptyCollectionByWrongIssueDate.

@Test
public void searchForDiagnosticReports_shouldReturnEmptyCollectionByWrongIssueDate() {
    DateRangeParam issueDate = new DateRangeParam(new DateParam(DIAGNOSTIC_REPORT_WRONG_DATETIME));
    SearchParameterMap theParams = new SearchParameterMap().addParameter(FhirConstants.DATE_RANGE_SEARCH_HANDLER, issueDate);
    IBundleProvider diagnosticReports = search(theParams);
    assertThat(diagnosticReports, notNullValue());
    assertThat(diagnosticReports.size(), equalTo(0));
    List<DiagnosticReport> resultList = get(diagnosticReports);
    assertThat(resultList, empty());
}

Example 14 with DiagnosticReport

use of org.hl7.fhir.r4.model.DiagnosticReport in project openmrs-module-fhir2 by openmrs.

the class DiagnosticReportSearchQueryTest method searchForDiagnosticReports_shouldReturnEmptyCollectionByWrongPatientIdentifier.

@Test
public void searchForDiagnosticReports_shouldReturnEmptyCollectionByWrongPatientIdentifier() {
    ReferenceAndListParam patientReference = new ReferenceAndListParam().addAnd(new ReferenceOrListParam().add(new ReferenceParam().setValue(WRONG_PATIENT_IDENTIFIER).setChain(SP_IDENTIFIER)));
    SearchParameterMap theParams = new SearchParameterMap().addParameter(FhirConstants.PATIENT_REFERENCE_SEARCH_HANDLER, patientReference);
    IBundleProvider diagnosticReports = search(theParams);
    assertThat(diagnosticReports, notNullValue());
    assertThat(diagnosticReports.size(), equalTo(0));
    List<DiagnosticReport> resultList = get(diagnosticReports);
    assertThat(resultList, empty());
}

Example 15 with DiagnosticReport

use of org.hl7.fhir.r4.model.DiagnosticReport in project openmrs-module-fhir2 by openmrs.

the class DiagnosticReportSearchQueryTest method searchForDiagnosticReports_shouldReturnDiagnosticReportByPatientName.

@Test
public void searchForDiagnosticReports_shouldReturnDiagnosticReportByPatientName() {
    ReferenceAndListParam patientReference = new ReferenceAndListParam().addAnd(new ReferenceOrListParam().add(new ReferenceParam().setValue(PATIENT_GIVEN_NAME).setChain(Patient.SP_NAME)));
    SearchParameterMap theParams = new SearchParameterMap().addParameter(FhirConstants.PATIENT_REFERENCE_SEARCH_HANDLER, patientReference);
    IBundleProvider diagnosticReports = search(theParams);
    assertThat(diagnosticReports, notNullValue());
    assertThat(diagnosticReports.size(), greaterThanOrEqualTo(1));
    List<DiagnosticReport> resultList = get(diagnosticReports);
    assertThat(resultList, hasSize(greaterThanOrEqualTo(1)));
    assertThat(resultList.get(0).getIdElement().getIdPart(), equalTo(DIAGNOSTIC_REPORT_UUID));
}