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Example 11 with DiagnosticReport

use of org.hl7.fhir.r4.model.DiagnosticReport in project cqf-ruler by DBCG.

the class ActivityDefinitionApplyProvider method resolveActivityDefinition.

// For library use
public Resource resolveActivityDefinition(ActivityDefinition activityDefinition, String patientId, String practitionerId, String organizationId, RequestDetails theRequest) throws FHIRException {
    Resource result = newResource(activityDefinition.getKind().toCode());
    switch(result.fhirType()) {
        case "ServiceRequest":
            result = resolveServiceRequest(activityDefinition, patientId, practitionerId, organizationId);
            break;
        case "MedicationRequest":
            result = resolveMedicationRequest(activityDefinition, patientId);
            break;
        case "SupplyRequest":
            result = resolveSupplyRequest(activityDefinition, practitionerId, organizationId);
            break;
        case "Procedure":
            result = resolveProcedure(activityDefinition, patientId);
            break;
        case "DiagnosticReport":
            result = resolveDiagnosticReport(activityDefinition, patientId);
            break;
        case "Communication":
            result = resolveCommunication(activityDefinition, patientId);
            break;
        case "CommunicationRequest":
            result = resolveCommunicationRequest(activityDefinition, patientId);
            break;
        case "Task":
            result = resolveTask(activityDefinition, patientId);
            break;
    }
    for (ActivityDefinition.ActivityDefinitionDynamicValueComponent dynamicValue : activityDefinition.getDynamicValue()) {
        // ActivityDefinition apply operation does not fail.
        try {
            if (dynamicValue.getExpression() != null) {
                // Special case for setting a Patient reference
                if ("Patient".equals(dynamicValue.getExpression().getExpression())) {
                    this.modelResolver.setValue(result, dynamicValue.getPath(), new Reference(patientId));
                } else {
                    /*
						 * TODO: Passing the activityDefinition as context here because that's what will
						 * have the libraries, but perhaps the "context" here should be the result
						 * resource?
						 */
                    Object value = expressionEvaluation.evaluateInContext(activityDefinition, dynamicValue.getExpression().getExpression(), patientId, theRequest);
                    if (value != null) {
                        logger.debug("dynamicValue value: {}", value);
                        if (value instanceof Boolean) {
                            value = new BooleanType((Boolean) value);
                        } else if (value instanceof DateTime) {
                            value = Date.from(((DateTime) value).getDateTime().toInstant());
                        } else if (value instanceof String) {
                            value = new StringType((String) value);
                        }
                        this.modelResolver.setValue(result, dynamicValue.getPath(), value);
                    } else {
                        logger.warn("WARNING: ActivityDefinition has null value for path: {}", dynamicValue.getPath());
                    }
                }
            }
        } catch (Exception e) {
            logger.error("ERROR: ActivityDefinition dynamicValue {} could not be applied and threw exception {}", dynamicValue.getPath(), e.toString());
            logger.error(e.toString());
        }
    }
    return result;
}
Also used : StringType(org.hl7.fhir.r4.model.StringType) Reference(org.hl7.fhir.r4.model.Reference) Resource(org.hl7.fhir.r4.model.Resource) BooleanType(org.hl7.fhir.r4.model.BooleanType) DateTime(org.opencds.cqf.cql.engine.runtime.DateTime) InternalErrorException(ca.uhn.fhir.rest.server.exceptions.InternalErrorException) FHIRException(org.hl7.fhir.exceptions.FHIRException) ActivityDefinition(org.hl7.fhir.r4.model.ActivityDefinition)

Example 12 with DiagnosticReport

use of org.hl7.fhir.r4.model.DiagnosticReport in project openmrs-module-fhir2 by openmrs.

the class DiagnosticReportSearchQueryTest method searchForDiagnosticReports_shouldReturnEmptyCollectionByWrongObsResult.

@Test
public void searchForDiagnosticReports_shouldReturnEmptyCollectionByWrongObsResult() {
    ReferenceAndListParam param = new ReferenceAndListParam().addAnd(new ReferenceOrListParam().add(new ReferenceParam(DIAGNOSTIC_REPORT_UUID)));
    SearchParameterMap theParams = new SearchParameterMap().addParameter(FhirConstants.RESULT_SEARCH_HANDLER, param);
    IBundleProvider diagnosticReports = search(theParams);
    assertThat(diagnosticReports, notNullValue());
    assertThat(diagnosticReports.size(), equalTo(0));
    List<DiagnosticReport> resultList = get(diagnosticReports);
    assertThat(diagnosticReports, notNullValue());
    assertThat(resultList.size(), equalTo(0));
}
Also used : ReferenceParam(ca.uhn.fhir.rest.param.ReferenceParam) FhirDiagnosticReport(org.openmrs.module.fhir2.model.FhirDiagnosticReport) DiagnosticReport(org.hl7.fhir.r4.model.DiagnosticReport) ReferenceAndListParam(ca.uhn.fhir.rest.param.ReferenceAndListParam) IBundleProvider(ca.uhn.fhir.rest.api.server.IBundleProvider) ReferenceOrListParam(ca.uhn.fhir.rest.param.ReferenceOrListParam) SearchParameterMap(org.openmrs.module.fhir2.api.search.param.SearchParameterMap) BaseModuleContextSensitiveTest(org.openmrs.test.BaseModuleContextSensitiveTest) Test(org.junit.Test)

Example 13 with DiagnosticReport

use of org.hl7.fhir.r4.model.DiagnosticReport in project openmrs-module-fhir2 by openmrs.

the class DiagnosticReportSearchQueryTest method searchForDiagnosticReports_shouldReturnEmptyCollectionByWrongIssueDate.

@Test
public void searchForDiagnosticReports_shouldReturnEmptyCollectionByWrongIssueDate() {
    DateRangeParam issueDate = new DateRangeParam(new DateParam(DIAGNOSTIC_REPORT_WRONG_DATETIME));
    SearchParameterMap theParams = new SearchParameterMap().addParameter(FhirConstants.DATE_RANGE_SEARCH_HANDLER, issueDate);
    IBundleProvider diagnosticReports = search(theParams);
    assertThat(diagnosticReports, notNullValue());
    assertThat(diagnosticReports.size(), equalTo(0));
    List<DiagnosticReport> resultList = get(diagnosticReports);
    assertThat(resultList, empty());
}
Also used : DateRangeParam(ca.uhn.fhir.rest.param.DateRangeParam) FhirDiagnosticReport(org.openmrs.module.fhir2.model.FhirDiagnosticReport) DiagnosticReport(org.hl7.fhir.r4.model.DiagnosticReport) IBundleProvider(ca.uhn.fhir.rest.api.server.IBundleProvider) DateParam(ca.uhn.fhir.rest.param.DateParam) SearchParameterMap(org.openmrs.module.fhir2.api.search.param.SearchParameterMap) BaseModuleContextSensitiveTest(org.openmrs.test.BaseModuleContextSensitiveTest) Test(org.junit.Test)

Example 14 with DiagnosticReport

use of org.hl7.fhir.r4.model.DiagnosticReport in project openmrs-module-fhir2 by openmrs.

the class DiagnosticReportSearchQueryTest method searchForDiagnosticReports_shouldReturnEmptyCollectionByWrongPatientIdentifier.

@Test
public void searchForDiagnosticReports_shouldReturnEmptyCollectionByWrongPatientIdentifier() {
    ReferenceAndListParam patientReference = new ReferenceAndListParam().addAnd(new ReferenceOrListParam().add(new ReferenceParam().setValue(WRONG_PATIENT_IDENTIFIER).setChain(SP_IDENTIFIER)));
    SearchParameterMap theParams = new SearchParameterMap().addParameter(FhirConstants.PATIENT_REFERENCE_SEARCH_HANDLER, patientReference);
    IBundleProvider diagnosticReports = search(theParams);
    assertThat(diagnosticReports, notNullValue());
    assertThat(diagnosticReports.size(), equalTo(0));
    List<DiagnosticReport> resultList = get(diagnosticReports);
    assertThat(resultList, empty());
}
Also used : ReferenceParam(ca.uhn.fhir.rest.param.ReferenceParam) FhirDiagnosticReport(org.openmrs.module.fhir2.model.FhirDiagnosticReport) DiagnosticReport(org.hl7.fhir.r4.model.DiagnosticReport) ReferenceAndListParam(ca.uhn.fhir.rest.param.ReferenceAndListParam) IBundleProvider(ca.uhn.fhir.rest.api.server.IBundleProvider) ReferenceOrListParam(ca.uhn.fhir.rest.param.ReferenceOrListParam) SearchParameterMap(org.openmrs.module.fhir2.api.search.param.SearchParameterMap) BaseModuleContextSensitiveTest(org.openmrs.test.BaseModuleContextSensitiveTest) Test(org.junit.Test)

Example 15 with DiagnosticReport

use of org.hl7.fhir.r4.model.DiagnosticReport in project openmrs-module-fhir2 by openmrs.

the class DiagnosticReportSearchQueryTest method searchForDiagnosticReports_shouldReturnDiagnosticReportByPatientName.

@Test
public void searchForDiagnosticReports_shouldReturnDiagnosticReportByPatientName() {
    ReferenceAndListParam patientReference = new ReferenceAndListParam().addAnd(new ReferenceOrListParam().add(new ReferenceParam().setValue(PATIENT_GIVEN_NAME).setChain(Patient.SP_NAME)));
    SearchParameterMap theParams = new SearchParameterMap().addParameter(FhirConstants.PATIENT_REFERENCE_SEARCH_HANDLER, patientReference);
    IBundleProvider diagnosticReports = search(theParams);
    assertThat(diagnosticReports, notNullValue());
    assertThat(diagnosticReports.size(), greaterThanOrEqualTo(1));
    List<DiagnosticReport> resultList = get(diagnosticReports);
    assertThat(resultList, hasSize(greaterThanOrEqualTo(1)));
    assertThat(resultList.get(0).getIdElement().getIdPart(), equalTo(DIAGNOSTIC_REPORT_UUID));
}
Also used : ReferenceParam(ca.uhn.fhir.rest.param.ReferenceParam) FhirDiagnosticReport(org.openmrs.module.fhir2.model.FhirDiagnosticReport) DiagnosticReport(org.hl7.fhir.r4.model.DiagnosticReport) ReferenceAndListParam(ca.uhn.fhir.rest.param.ReferenceAndListParam) IBundleProvider(ca.uhn.fhir.rest.api.server.IBundleProvider) ReferenceOrListParam(ca.uhn.fhir.rest.param.ReferenceOrListParam) SearchParameterMap(org.openmrs.module.fhir2.api.search.param.SearchParameterMap) BaseModuleContextSensitiveTest(org.openmrs.test.BaseModuleContextSensitiveTest) Test(org.junit.Test)

Aggregations

Test (org.junit.Test)133 DiagnosticReport (org.hl7.fhir.r4.model.DiagnosticReport)115 FhirDiagnosticReport (org.openmrs.module.fhir2.model.FhirDiagnosticReport)65 IBundleProvider (ca.uhn.fhir.rest.api.server.IBundleProvider)52 MockHttpServletResponse (org.springframework.mock.web.MockHttpServletResponse)50 SearchParameterMap (org.openmrs.module.fhir2.api.search.param.SearchParameterMap)42 Test (org.junit.jupiter.api.Test)39 BaseModuleContextSensitiveTest (org.openmrs.test.BaseModuleContextSensitiveTest)39 DiagnosticReport (org.hl7.fhir.dstu3.model.DiagnosticReport)32 IBaseResource (org.hl7.fhir.instance.model.api.IBaseResource)29 ReferenceAndListParam (ca.uhn.fhir.rest.param.ReferenceAndListParam)28 ReferenceOrListParam (ca.uhn.fhir.rest.param.ReferenceOrListParam)28 ReferenceParam (ca.uhn.fhir.rest.param.ReferenceParam)28 BundleEntryComponent (org.hl7.fhir.r4.model.Bundle.BundleEntryComponent)19 Reference (org.hl7.fhir.r4.model.Reference)19 Bundle (org.hl7.fhir.r4.model.Bundle)18 Resource (org.hl7.fhir.r4.model.Resource)18 CodeableConcept (org.hl7.fhir.r4.model.CodeableConcept)16 Include (ca.uhn.fhir.model.api.Include)12 HashSet (java.util.HashSet)12