Examples with DomainResource org.hl7.fhir.r4.model.DomainResource used on opensource projects

Example 91 with DomainResource

use of org.hl7.fhir.r4.model.DomainResource in project org.hl7.fhir.core by hapifhir.

the class BundleRenderer method renderDocument.

private boolean renderDocument(XhtmlNode x, Bundle b) throws UnsupportedEncodingException, FHIRException, IOException, EOperationOutcome {
    // from the spec:
    // 
    // When the document is presented for human consumption, applications SHOULD present the collated narrative portions in order:
    // * The subject resource Narrative
    // * The Composition resource Narrative
    // * The section.text Narratives
    Composition comp = (Composition) b.getEntry().get(0).getResource();
    Resource subject = resolveReference(b, comp.getSubject());
    if (subject != null) {
        XhtmlNode nx = (subject instanceof DomainResource) ? ((DomainResource) subject).getText().getDiv() : null;
        if (nx != null) {
            x.addChildren(nx);
        } else {
            RendererFactory.factory(subject, context).render(x, subject);
        }
    }
    x.hr();
    if (comp.getText().hasDiv()) {
        x.addChildren(comp.getText().getDiv());
        x.hr();
    }
    for (SectionComponent section : comp.getSection()) {
        addSection(x, section, 2, false);
    }
    return false;
}

Example 92 with DomainResource

use of org.hl7.fhir.r4.model.DomainResource in project org.hl7.fhir.core by hapifhir.

the class NarrativeGeneratorTests method process.

private void process(InputStream stream) throws FileNotFoundException, IOException, XmlPullParserException, EOperationOutcome, FHIRException {
    XmlParser p = new XmlParser();
    DomainResource r = (DomainResource) p.parse(stream);
    RendererFactory.factory(r, rc).render(r);
    FileOutputStream s = new FileOutputStream(TestingUtilities.tempFile("gen", "gen.xml"));
    new XmlParser().compose(s, r, true);
    s.close();
}

Example 93 with DomainResource

use of org.hl7.fhir.r4.model.DomainResource in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method generateByProfile.

private void generateByProfile(DomainResource r, StructureDefinition profile, boolean showCodeDetails) {
    XhtmlNode x = new XhtmlNode(NodeType.Element, "div");
    x.addTag("p").addTag("b").addText("Generated Narrative" + (showCodeDetails ? " with Details" : ""));
    try {
        generateByProfile(r, profile, r, profile.getSnapshot().getElement(), profile.getSnapshot().getElement().get(0), getChildrenForPath(profile.getSnapshot().getElement(), r.getResourceType().toString()), x, r.getResourceType().toString(), showCodeDetails);
    } catch (Exception e) {
        e.printStackTrace();
        x.addTag("p").addTag("b").setAttribute("style", "color: maroon").addText("Exception generating Narrative: " + e.getMessage());
    }
    inject(r, x, NarrativeStatus.GENERATED);
}

Example 94 with DomainResource

use of org.hl7.fhir.r4.model.DomainResource in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method inject.

private void inject(DomainResource r, XhtmlNode x, NarrativeStatus status) {
    if (!r.hasText() || !r.getText().hasDiv() || r.getText().getDiv().getChildNodes().isEmpty()) {
        r.setText(new Narrative());
        r.getText().setDiv(x);
        r.getText().setStatus(status);
    } else {
        XhtmlNode n = r.getText().getDiv();
        n.addTag("hr");
        n.getChildNodes().addAll(x.getChildNodes());
    }
}

Example 95 with DomainResource

use of org.hl7.fhir.r4.model.DomainResource in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method checkTypeDerivation.

public void checkTypeDerivation(String purl, StructureDefinition srcSD, ElementDefinition base, ElementDefinition derived, TypeRefComponent ts) {
    boolean ok = false;
    CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
    String t = ts.getWorkingCode();
    for (TypeRefComponent td : base.getType()) {
        ;
        String tt = td.getWorkingCode();
        b.append(tt);
        if (td.hasCode() && (tt.equals(t))) {
            ok = true;
        }
        if (!ok) {
            StructureDefinition sdt = context.fetchTypeDefinition(tt);
            if (sdt != null && (sdt.getAbstract() || sdt.getKind() == StructureDefinitionKind.LOGICAL)) {
                StructureDefinition sdb = context.fetchTypeDefinition(t);
                while (sdb != null && !ok) {
                    ok = sdb.getType().equals(sdt.getType());
                    sdb = context.fetchResource(StructureDefinition.class, sdb.getBaseDefinition());
                }
            }
        }
        // work around for old badly generated SDs
        if (DONT_DO_THIS && Utilities.existsInList(tt, "Extension", "uri", "string", "Element")) {
            ok = true;
        }
        if (DONT_DO_THIS && Utilities.existsInList(tt, "Resource", "DomainResource") && pkp.isResource(t)) {
            ok = true;
        }
        if (ok && ts.hasTargetProfile()) {
            // check that any derived target has a reference chain back to one of the base target profiles
            for (UriType u : ts.getTargetProfile()) {
                String url = u.getValue();
                boolean tgtOk = !td.hasTargetProfile() || td.hasTargetProfile(url);
                while (url != null && !tgtOk) {
                    StructureDefinition sd = context.fetchRawProfile(url);
                    if (sd == null) {
                        if (messages != null) {
                            messages.add(new ValidationMessage(Source.InstanceValidator, IssueType.BUSINESSRULE, purl + "#" + derived.getPath(), "Cannot check whether the target profile " + url + " is valid constraint on the base because it is not known", IssueSeverity.WARNING));
                        }
                        url = null;
                        // suppress error message
                        tgtOk = true;
                    } else {
                        url = sd.getBaseDefinition();
                        tgtOk = td.hasTargetProfile(url);
                    }
                }
                if (!tgtOk) {
                    if (messages == null) {
                        throw new FHIRException(context.formatMessage(I18nConstants.ERROR_AT__THE_TARGET_PROFILE__IS_NOT__VALID_CONSTRAINT_ON_THE_BASE_, purl, derived.getPath(), url, td.getTargetProfile()));
                    } else {
                        messages.add(new ValidationMessage(Source.InstanceValidator, IssueType.BUSINESSRULE, derived.getPath(), "The target profile " + u.getValue() + " is not a valid constraint on the base (" + td.getTargetProfile() + ") at " + derived.getPath(), IssueSeverity.ERROR));
                    }
                }
            }
        }
    }
    if (!ok) {
        throw new DefinitionException(context.formatMessage(I18nConstants.STRUCTUREDEFINITION__AT__ILLEGAL_CONSTRAINED_TYPE__FROM__IN_, purl, derived.getPath(), t, b.toString(), srcSD.getUrl()));
    }
}