Examples with FHIRDefinedType org.hl7.fhir.r4.model.Enumerations.FHIRDefinedType used on opensource projects

Example 1 with FHIRDefinedType

use of org.hl7.fhir.r4.model.Enumerations.FHIRDefinedType in project kindling by HL7.

the class TerminologyNotesGenerator method gen.

private void gen(String prefix, Map<BindingSpecification, List<CDUsage>> txusages2) throws Exception {
    List<BindingSpecification> cds = new ArrayList<BindingSpecification>();
    cds.addAll(txusages.keySet());
    if (cds.size() == 0)
        return;
    Collections.sort(cds, new MyCompare());
    if (noHeader)
        write("<p>\r\n<b>Terminology Bindings</b>\r\n</p>\r\n");
    else
        write("<h3>\r\nTerminology Bindings\r\n</h3>\r\n");
    // 1. new form
    write("<table class=\"grid\">\r\n");
    write(" <tr><th>Path</th><th>Definition</th><th>Type</th><th>Reference</th></tr>\r\n");
    for (BindingSpecification cd : cds) {
        String path;
        List<CDUsage> list = txusages.get(cd);
        for (int i = 2; i < list.size(); i++) {
            if (!matchesTypes(list.get(i).element.typeCodeNoParams(), list.get(1).element.typeCodeNoParams()))
                throw new Exception("Mixed types on one concept domain in one type - not yet supported by the build process for binding " + cd.getName() + " (" + list.get(i).element.typeCode() + " vs " + list.get(1).element.typeCode() + ")");
        }
        String name = cd.getValueSet() != null ? cd.getValueSet().present() : cd.getName();
        write(" <tr><td valign=\"top\" title=\"" + name + "\">");
        boolean first = true;
        for (int i = 1; i < list.size(); i++) {
            if (!first)
                write("<br/>");
            first = false;
            write(list.get(i).path);
        }
        write(" </td>");
        write("<td valign=\"top\">" + Utilities.escapeXml(cd.getDefinition()) + "</td>");
        if (cd.getBinding() == BindingMethod.Unbound)
            write("<td>Unknown</td><td valign=\"top\">No details provided yet</td>");
        else {
            if (cd.hasMax()) {
                ValueSet vs = cd.getMaxValueSet();
                if (vs == null) {
                    write("<td><a href=\"" + prefix + "terminologies.html#" + cd.getStrength().toCode() + "\">" + cd.getStrength().getDisplay() + "</a>, but limited to <a href=\"" + cd.getMaxReference() + "\">" + cd.getMaxReference() + "</a></td>");
                } else {
                    String pp = vs.hasUserData("external.url") ? vs.getUserString("external.url") : vs.getUserString("path");
                    write("<td><a href=\"" + prefix + "terminologies.html#" + cd.getStrength().toCode() + "\">" + cd.getStrength().getDisplay() + "</a>, but limited to <a href=\"" + prefix + pp.replace(File.separatorChar, '/') + "\">" + vs.getName() + "</a></td>");
                }
            } else
                write("<td><a href=\"" + prefix + "terminologies.html#" + cd.getStrength().toCode() + "\">" + cd.getStrength().getDisplay() + "</a></td>");
            write("<td valign=\"top\">");
            if (cd.getBinding() == BindingSpecification.BindingMethod.Special) {
                if (name.equals("MessageEvent"))
                    write("<a href=\"" + prefix + "valueset-message-events.html\">Message Events</a>");
                else if (name.equals("ResourceType"))
                    write("<a href=\"" + prefix + "valueset-resource-types.html\">Resource Types</a>");
                else if (name.equals("DataType"))
                    write("<a href=\"" + prefix + "valueset-data-types.html\">Data Types</a>");
                else if (name.equals("FHIRDefinedType"))
                    write("<a href=\"" + prefix + "valueset-defined-types.html\">Defined Types</a>");
                else if (name.equals("FHIRAllTypes"))
                    write("<a href=\"" + prefix + "valueset-all-types.html\">All Types</a>");
                else
                    throw new Exception("Unknown special type " + name);
            } else if (cd.getValueSet() != null) {
                ValueSet vs = cd.getValueSet();
                String pp = vs.hasUserData("external.url") ? vs.getUserString("external.url") : vs.getUserString("path");
                if (pp == null)
                    throw new Exception("unknown path on " + cd.getReference());
                write("<a href=\"" + prefix + pp.replace(File.separatorChar, '/') + "\">" + vs.getName() + "</a><!-- b -->");
            } else if (cd.getBinding() == BindingSpecification.BindingMethod.ValueSet) {
                if (Utilities.noString(cd.getReference()))
                    write("??");
                else if (cd.getReference().startsWith("valueset-"))
                    write("<a href=\"" + prefix + cd.getReference() + ".html\">http://hl7.org/fhir/ValueSet/" + cd.getReference().substring(9) + "</a><!-- a -->");
                else if (cd.getReference().startsWith("http://hl7.org/fhir")) {
                    if (cd.getReference().startsWith("http://terminology.hl7.org/ValueSet/v3-")) {
                        ValueSet vs = page.getValueSets().get(cd.getReference());
                        String pp = vs.hasUserData("external.url") ? vs.getUserString("external.url") : vs.getUserString("path");
                        if (pp == null)
                            throw new Exception("unknown path on " + cd.getReference());
                        write("<a href=\"" + prefix + pp.replace(File.separatorChar, '/') + "\">" + cd.getReference() + "</a><!-- b -->");
                    } else if (cd.getReference().startsWith("http://terminology.hl7.org/ValueSet/v2-")) {
                        ValueSet vs = page.getValueSets().get(cd.getReference());
                        String pp = vs.hasUserData("external.url") ? vs.getUserString("external.url") : vs.getUserString("path");
                        write("<a href=\"" + prefix + pp.replace(File.separatorChar, '/') + "\">" + cd.getReference() + "</a><!-- c -->");
                    } else if (cd.getReference().startsWith("http://hl7.org/fhir/ValueSet/")) {
                        String ref = getBindingLink(cd);
                        write("<a href=\"" + prefix + ref + "\">" + cd.getReference() + "</a><!-- d -->");
                    // BindingSpecification bs1 = page.getDefinitions().getBindingByURL(cd.getReference());
                    // if (bs1 != null)
                    // write("<a href=\""+cd.getReference().substring(23)+".html\">"+cd.getReference()+"</a><!-- d -->");
                    // else
                    // write("<a href=\"valueset-"+cd.getReference().substring(23)+".html\">"+cd.getReference()+"</a><!-- d -->");
                    } else
                        throw new Exception("Internal reference " + cd.getReference() + " not handled yet");
                } else if (cd.getReference().startsWith("http:"))
                    write("<a href=\"" + cd.getReference() + "\">" + cd.getReference() + "</a><!-- e -->");
                else
                    write("<a href=\"" + prefix + "valueset-" + cd.getReference() + ".html\">http://hl7.org/fhir/" + cd.getReference() + "</a><!-- e -->");
            } else if (cd.getBinding() == BindingSpecification.BindingMethod.CodeList) {
                write("<a href=\"" + prefix + "valueset-" + cd.getReference().substring(1) + ".html\">http://hl7.org/fhir/" + cd.getReference().substring(1) + "</a><!-- f -->");
            }
            write("</td>");
        }
        write(" </tr>\r\n");
    }
    write("</table>\r\n<p> </p>\r\n");
}

Example 2 with FHIRDefinedType

use of org.hl7.fhir.r4.model.Enumerations.FHIRDefinedType in project pathling by aehrc.

the class ElementPath method getInstance.

@Nonnull
private static ElementPath getInstance(@Nonnull final String expression, @Nonnull final Dataset<Row> dataset, @Nonnull final Column idColumn, @Nonnull final Optional<Column> eidColumn, @Nonnull final Column valueColumn, final boolean singular, @Nonnull final Optional<ResourcePath> currentResource, @Nonnull final Optional<Column> thisColumn, @Nonnull final FHIRDefinedType fhirType) {
    // Look up the class that represents an element with the specified FHIR type.
    final Class<? extends ElementPath> elementPathClass = ElementDefinition.elementClassForType(fhirType).orElse(ElementPath.class);
    final DatasetWithColumnMap datasetWithColumns = eidColumn.map(eidCol -> createColumns(dataset, eidCol, valueColumn)).orElseGet(() -> createColumns(dataset, valueColumn));
    try {
        // Call its constructor and return.
        final Constructor<? extends ElementPath> constructor = elementPathClass.getDeclaredConstructor(String.class, Dataset.class, Column.class, Optional.class, Column.class, boolean.class, Optional.class, Optional.class, FHIRDefinedType.class);
        return constructor.newInstance(expression, datasetWithColumns.getDataset(), idColumn, eidColumn.map(datasetWithColumns::getColumn), datasetWithColumns.getColumn(valueColumn), singular, currentResource, thisColumn, fhirType);
    } catch (final NoSuchMethodException | InstantiationException | IllegalAccessException | InvocationTargetException e) {
        throw new RuntimeException("Problem building an ElementPath class", e);
    }
}

Example 3 with FHIRDefinedType

use of org.hl7.fhir.r4.model.Enumerations.FHIRDefinedType in project pathling by aehrc.

the class DateTimePath method valueFromRow.

/**
 * Gets a value from a row for a DateTime or DateTime literal.
 *
 * @param row The {@link Row} from which to extract the value
 * @param columnNumber The column number to extract the value from
 * @param fhirType The FHIR type to assume when extracting the value
 * @return A {@link BaseDateTimeType}, or the absence of a value
 */
@Nonnull
public static Optional<BaseDateTimeType> valueFromRow(@Nonnull final Row row, final int columnNumber, final FHIRDefinedType fhirType) {
    if (row.isNullAt(columnNumber)) {
        return Optional.empty();
    }
    if (fhirType == FHIRDefinedType.INSTANT) {
        final InstantType value = new InstantType(row.getTimestamp(columnNumber));
        value.setTimeZone(TIME_ZONE);
        return Optional.of(value);
    } else {
        final DateTimeType value = new DateTimeType(row.getString(columnNumber));
        value.setTimeZone(TIME_ZONE);
        return Optional.of(value);
    }
}

Example 4 with FHIRDefinedType

use of org.hl7.fhir.r4.model.Enumerations.FHIRDefinedType in project pathling by aehrc.

the class ElementPath method build.

/**
 * Builds the appropriate subtype of ElementPath based upon the supplied {@link
 * ElementDefinition}.
 * <p>
 * Use this builder when the path is the child of another path, and will need to be traversable.
 *
 * @param expression the FHIRPath representation of this path
 * @param dataset a {@link Dataset} that can be used to evaluate this path against data
 * @param idColumn a {@link Column} within the dataset containing the identity of the subject
 * resource
 * @param eidColumn a {@link Column} within the dataset containing the element identity
 * @param valueColumn a {@link Column} within the dataset containing the values of the nodes
 * @param singular an indicator of whether this path represents a single-valued collection
 * @param currentResource the current resource within this path
 * @param thisColumn collection values where this path originated from {@code $this}
 * @param definition the HAPI element definition that this path should be based upon
 * @return a new ElementPath
 */
@Nonnull
public static ElementPath build(@Nonnull final String expression, @Nonnull final Dataset<Row> dataset, @Nonnull final Column idColumn, @Nonnull final Optional<Column> eidColumn, @Nonnull final Column valueColumn, final boolean singular, @Nonnull final Optional<ResourcePath> currentResource, @Nonnull final Optional<Column> thisColumn, @Nonnull final ElementDefinition definition) {
    final Optional<FHIRDefinedType> optionalFhirType = definition.getFhirType();
    if (optionalFhirType.isPresent()) {
        final FHIRDefinedType fhirType = optionalFhirType.get();
        final ElementPath path = ElementPath.build(expression, dataset, idColumn, eidColumn, valueColumn, singular, currentResource, thisColumn, fhirType);
        path.definition = Optional.of(definition);
        return path;
    } else {
        throw new IllegalArgumentException("Attempted to build an ElementPath with an ElementDefinition with no fhirType");
    }
}

Example 5 with FHIRDefinedType

use of org.hl7.fhir.r4.model.Enumerations.FHIRDefinedType in project kindling by HL7.

the class TerminologyNotesGenerator method describeBinding.

public static String describeBinding(String prefix, BindingSpecification cd, PageProcessor page) throws Exception {
    if (cd.getBinding() == BindingSpecification.BindingMethod.Unbound)
        return cd.getDefinition();
    if (cd.getBinding() == BindingSpecification.BindingMethod.Special) {
        if (cd.getValueSet().getName().equals("MessageEvent"))
            return "the <a href=\"" + prefix + "valueset-message-events.html\">Event List in the messaging framework</a>";
        else if (cd.getValueSet().getName().equals("ResourceType"))
            return "<a href=\"" + prefix + "valueset-resource-types.html\">Any defined Resource Type name</a>";
        else if (cd.getValueSet().getName().equals("DataType"))
            return "<a href=\"" + prefix + "valueset-data-types.html\">Any defined Data Type name</a>";
        else if (cd.getValueSet().getName().equals("FHIRDefinedType"))
            return "<a href=\"" + prefix + "valueset-defined-types.html\">Any defined Resource or Data Type name</a>";
        else if (cd.getValueSet().getName().equals("FHIRAllTypes"))
            return "<a href=\"" + prefix + "valueset-all-types.html\">Any defined Resource or Data Type name (including \"Any\" and \"Type\")</a>";
        else
            throw new Exception("Unknown special type " + cd.getValueSet().getName());
    }
    String mx = "";
    if (cd.hasMax()) {
        if (cd.getMaxValueSet() == null)
            mx = " but limited to ??";
        else {
            String pp = cd.getMaxValueSet().hasUserData("external.url") ? cd.getMaxValueSet().getUserString("external.url") : cd.getMaxValueSet().getUserString("path");
            mx = " but limited to <a href=\"" + prefix + pp.replace(File.separatorChar, '/') + "\">" + cd.getMaxValueSet().present() + "</a>";
        }
    }
    String bs = "<a href=\"" + prefix + "terminologies.html#" + cd.getStrength().toCode() + "\">" + cd.getStrength().getDisplay() + "</a>";
    if (cd.getValueSet() != null) {
        ValueSet vs = cd.getValueSet();
        String pp = vs.hasUserData("external.url") ? vs.getUserString("external.url") : vs.getUserString("path");
        return "<a href=\"" + prefix + pp.replace(File.separatorChar, '/') + "\">" + cd.getValueSet().present() + "</a> (" + bs + mx + ")";
    } else if (cd.getBinding() == BindingSpecification.BindingMethod.ValueSet) {
        if (Utilities.noString(cd.getReference()))
            return cd.getDescription();
        else if (cd.getValueSet() == null)
            return bs + ": <a href=\"" + (cd.getReference().startsWith("http") ? cd.getReference() : prefix + cd.getReference() + ".html") + "\">See " + cd.getDescription() + "</a> (" + cd.getDefinition() + mx + ")";
        else
            return bs + ": <a href=\"" + prefix + cd.getReference() + ".html\">See " + cd.getValueSet().getUrl() + "</a> (" + cd.getDefinition() + mx + ")";
    } else if (cd.getBinding() == BindingSpecification.BindingMethod.CodeList) {
        if (Utilities.noString(cd.getReference()))
            return bs + ": " + cd.getDescription() + " (" + cd.getDefinition() + mx + ")";
        else
            return bs + ": <a href=\"" + prefix + "valueset-" + cd.getReference().substring(1) + ".html\">http://hl7.org/fhir/" + cd.getReference().substring(1) + "</a> (" + cd.getDefinition() + mx + ")";
    }
    return "??";
}