Examples with BindingSpecification org.hl7.fhir.definitions.model.BindingSpecification used on opensource projects

Example 1 with BindingSpecification

use of org.hl7.fhir.definitions.model.BindingSpecification in project kindling by HL7.

the class Publisher method loadValueSets1.

private void loadValueSets1() throws Exception {
    page.log(" ...vocab #1", LogMessageType.Process);
    generateCodeSystemsPart1();
    generateValueSetsPart1();
    for (BindingSpecification cd : page.getDefinitions().getUnresolvedBindings()) {
        String ref = cd.getReference();
        if (ref.startsWith("http://hl7.org/fhir")) {
            // we expect to be able to resolve this
            ValueSet vs = page.getDefinitions().getValuesets().get(ref);
            if (vs == null)
                vs = page.getDefinitions().getExtraValuesets().get(ref);
            if (vs == null)
                vs = page.getWorkerContext().fetchResource(ValueSet.class, ref);
            if (vs == null) {
                if (page.getDefinitions().getBoundValueSets().containsKey(ref))
                    throw new Exception("Unable to resolve the value set reference " + ref + " but found it in load list");
                throw new Exception("Unable to resolve the value set reference " + ref);
            }
            cd.setValueSet(vs);
        } else {
            ValueSet vs = page.getWorkerContext().fetchResource(ValueSet.class, ref);
            if (vs != null)
                cd.setValueSet(vs);
            else if (!ref.startsWith("http://loinc.org/vs/LL"))
                System.out.println("Unresolved value set reference: " + ref);
        }
    }
    for (ImplementationGuideDefn ig : page.getDefinitions().getSortedIgs()) {
        for (BindingSpecification cd : ig.getUnresolvedBindings()) {
            String ref = cd.getReference();
            if (ref.contains("|"))
                ref = ref.substring(0, ref.indexOf("|"));
            ValueSet vs = page.getDefinitions().getValuesets().get(ref);
            if (vs == null)
                vs = ig.getValueSet(ref);
            if (vs == null)
                vs = page.getWorkerContext().fetchResource(ValueSet.class, ref);
            if (vs == null)
                throw new Exception("unable to resolve value set " + ref);
            cd.setValueSet(vs);
        }
    }
}

Example 2 with BindingSpecification

use of org.hl7.fhir.definitions.model.BindingSpecification in project kindling by HL7.

the class PageProcessor method genCodeSystemsTable.

private String genCodeSystemsTable() throws Exception {
    StringBuilder s = new StringBuilder();
    s.append("<table class=\"codes\">\r\n");
    List<String> names = new ArrayList<String>();
    names.addAll(definitions.getCodeSystems().keys());
    // for (String n : definitions.getBindings().keySet()) {
    // if ((definitions.getBindingByName(n).getBinding() == Binding.CodeList && !definitions.getBindingByName(n).getVSSources().contains("")) ||
    // (definitions.getBindingByName(n).getBinding() == Binding.Special))
    // names.add(definitions.getBindingByName(n).getReference().substring(1));
    // }
    // 
    // //  not this one      Logical Interactions (RESTful framework)  http://hl7.org/fhir/rest-operations 2.16.840.1.113883.6.308
    // s.append(" <tr><td><a href=\""+cd.getReference().substring(1)+".html\">http://hl7.org/fhir/"+cd.getReference().substring(1)+"</a></td><td>"+Utilities.escapeXml(cd.getDefinition())+"</td></tr>\r\n");
    // 
    Collections.sort(names);
    for (String n : names) {
        if (n.startsWith("http://hl7.org") && !n.startsWith("http://terminology.hl7.org/CodeSystem/v2") && !n.startsWith("http://terminology.hl7.org/CodeSystem/v3")) {
            // BindingSpecification cd = definitions.getBindingByReference("#"+n);
            CodeSystem ae = definitions.getCodeSystems().get(n);
            if (ae == null)
                s.append(" <tr><td><a href=\"" + "??" + ".html\">").append(n).append("</a></td><td>").append("??").append("</td></tr>\r\n");
            else {
                s.append(" <tr><td><a href=\"").append(ae.getUserData("path")).append("\">").append(n).append("</a></td><td>").append(ae.getDescription()).append("</td></tr>\r\n");
            }
        }
    }
    s.append("</table>\r\n");
    return s.toString();
}

Example 3 with BindingSpecification

use of org.hl7.fhir.definitions.model.BindingSpecification in project kindling by HL7.

the class BookMaker method addContent.

private void addContent(XhtmlNode body) throws Exception {
    List<String> list = new ArrayList<String>();
    loadResources(list, page.getDefinitions().getResources().keySet());
    XhtmlNode e = body.getElement("contents");
    XhtmlNode div = body.addTag(body.getChildNodes().indexOf(e), "div");
    body.getChildNodes().remove(e);
    List<String> links = new ArrayList<String>();
    LevelCounter lvl = new LevelCounter();
    lvl.l1 = 0;
    for (Navigation.Category s : page.getNavigation().getCategories()) {
        lvl.l1++;
        // div.addTag("div").setAttribute("class", "page-break");
        XhtmlNode divS = div.addTag("div");
        divS.attribute("class", "section");
        XhtmlNode h1 = divS.addTag("h1");
        h1.addText(Integer.toString(lvl.l1) + ": " + s.getName());
        addPageContent(lvl, divS, s.getLink(), s.getName());
        links.add(s.getLink());
        lvl.l2 = 0;
        for (Navigation.Entry n : s.getEntries()) {
            lvl.l2++;
            lvl.l3 = 0;
            if (n.getLink() != null) {
                if (n.getLink().equals("[codes]")) {
                    lvl.l2--;
                    List<String> names = new ArrayList<String>();
                    throw new Error("fix this");
                // for (BindingSpecification bs : page.getDefinitions().getBindings().values()) {
                // if (bs.getBinding() == Binding.CodeList)
                // names.add(bs.getReference());
                // }
                // Collections.sort(names);
                // for (String l : names) {
                // addPageContent(lvl, divS, l.substring(1), page.getDefinitions().getBindingByReference(l).getName());
                // //              links.add(l.substring(1));
                // }
                } else {
                    addPageContent(lvl, divS, n.getLink(), n.getName());
                    links.add(n.getLink());
                }
            }
            for (Navigation.Entry g : n.getEntries()) {
                if (g.getLink() != null) {
                    addPageContent(lvl, divS, g.getLink(), g.getName());
                    links.add(g.getLink());
                }
            }
        }
        if (s.getEntries().size() == 0 && s.getLink().equals("resourcelist")) {
            for (String rn : list) {
                if (!links.contains(rn.toLowerCase())) {
                    lvl.l2++;
                    lvl.l3 = 0;
                    ResourceDefn r = page.getDefinitions().getResourceByName(rn);
                    addPageContent(lvl, divS, rn.toLowerCase(), r.getName());
                }
            }
        }
        if (s.getLink().equals("page") && s.getName().equals("Examples")) {
            for (String rn : list) {
                lvl.l2++;
                lvl.l3 = 0;
                ResourceDefn r = page.getDefinitions().getResourceByName(rn);
                addPageContent(lvl, divS, rn.toLowerCase() + "Ex", r.getName());
            }
        }
        if (s.getLink().equals("page") && s.getName().equals("Detailed Descriptions")) {
            for (String rn : list) {
                lvl.l2++;
                lvl.l3 = 0;
                ResourceDefn r = page.getDefinitions().getResourceByName(rn);
                addPageContent(lvl, divS, rn.toLowerCase() + "Defn", r.getName());
            }
        }
    }
}

Example 4 with BindingSpecification

use of org.hl7.fhir.definitions.model.BindingSpecification in project kindling by HL7.

the class ValueSetGenerator method loadOperationOutcomeValueSet.

public void loadOperationOutcomeValueSet(BindingSpecification cd) throws Exception {
    ValueSet vs = new ValueSet();
    cd.setValueSet(vs);
    cd.setBindingMethod(BindingMethod.ValueSet);
    vs.setId("operation-outcome");
    vs.setUrl("http://hl7.org/fhir/ValueSet/" + vs.getId());
    vs.setName("OperationOutcomeCodes");
    vs.setTitle("Operation Outcome Codes");
    vs.setPublisher("HL7 (FHIR Project)");
    vs.setVersion(version);
    vs.setUserData("filename", "valueset-" + vs.getId());
    if (!vs.hasExtension(ToolingExtensions.EXT_WORKGROUP)) {
        vs.addExtension().setUrl(ToolingExtensions.EXT_WORKGROUP).setValue(new CodeType("fhir"));
    } else {
        String ec = ToolingExtensions.readStringExtension(vs, ToolingExtensions.EXT_WORKGROUP);
        if (!ec.equals("fhir"))
            System.out.println("ValueSet " + vs.getUrl() + " WG mismatch 11: is " + ec + ", want to set to " + "fhir");
    }
    vs.setUserData("path", "valueset-" + vs.getId() + ".html");
    ContactDetail c = vs.addContact();
    c.addTelecom().setSystem(ContactPointSystem.URL).setValue("http://hl7.org/fhir");
    c.addTelecom().setSystem(ContactPointSystem.EMAIL).setValue("fhir@lists.hl7.org");
    vs.setDescription("Operation Outcome codes used by FHIR test servers (see Implementation file translations.xml)");
    vs.setStatus(PublicationStatus.DRAFT);
    if (!vs.hasCompose())
        vs.setCompose(new ValueSetComposeComponent());
    vs.getCompose().addInclude().setSystem("http://terminology.hl7.org/CodeSystem/operation-outcome");
    CodeSystem cs = new CodeSystem();
    cs.setHierarchyMeaning(CodeSystemHierarchyMeaning.ISA);
    Set<String> codes = translator.listTranslations("ecode");
    for (String s : sorted(codes)) {
        Map<String, String> langs = translator.translations(s);
        ConceptDefinitionComponent cv = cs.addConcept();
        cv.setCode(s);
        cv.setDisplay(langs.get("en"));
        for (String lang : langs.keySet()) {
            if (!lang.equals("en")) {
                String value = langs.get(lang);
                ConceptDefinitionDesignationComponent dc = cv.addDesignation();
                dc.setLanguage(lang);
                dc.setValue(value);
                dc.getUse().setSystem("http://terminology.hl7.org/CodeSystem/designation-usage").setCode("display");
            }
        }
    }
    CodeSystemConvertor.populate(cs, vs);
    cs.setUrl("http://terminology.hl7.org/CodeSystem/operation-outcome");
    cs.setVersion(version);
    cs.setCaseSensitive(true);
    cs.setContent(CodeSystemContentMode.COMPLETE);
    definitions.getCodeSystems().see(cs, packageInfo);
}

Example 5 with BindingSpecification

use of org.hl7.fhir.definitions.model.BindingSpecification in project kindling by HL7.

the class BindingsParser method parse.

public List<BindingSpecification> parse() throws Exception {
    List<BindingSpecification> results = new ArrayList<BindingSpecification>();
    // BindingSpecification n = new BindingSpecification();
    // n.setName("*unbound*");
    // n.setBinding(BindingSpecification.Binding.Unbound);
    // results.add(n);
    xls = new XLSXmlParser(file, filename);
    new XLSXmlNormaliser(filename, exceptionIfExcelNotNormalised).go();
    Sheet sheet = xls.getSheets().get("Bindings");
    for (int row = 0; row < sheet.rows.size(); row++) {
        processLine(results, sheet, row);
    }
    return results;
}