Examples with BindingSpecification org.hl7.fhir.definitions.model.BindingSpecification used on opensource projects

Example 31 with BindingSpecification

use of org.hl7.fhir.definitions.model.BindingSpecification in project kindling by HL7.

the class BindingsParser method processLine.

private void processLine(List<BindingSpecification> results, Sheet sheet, int row) throws Exception {
    BindingSpecification cd = new BindingSpecification("core", sheet.getColumn(row, "Binding Name"), true);
    if (!cd.getName().startsWith("!")) {
        if (Character.isLowerCase(cd.getName().charAt(0)))
            throw new Exception("binding name " + cd.getName() + " is illegal - must start with a capital letter");
        cd.setDefinition(Utilities.appendPeriod(sheet.getColumn(row, "Definition")));
        cd.setBindingMethod(readBinding(sheet.getColumn(row, "Binding"), cd.getName() + " in " + filename));
        boolean utg = "y".equals(sheet.getColumn(row, "UTG"));
        String ref = sheet.getColumn(row, "Reference");
        if (!cd.getBinding().equals(BindingMethod.Unbound) && Utilities.noString(ref))
            throw new Exception("binding " + cd.getName() + " is missing a reference");
        if (cd.getBinding() == BindingMethod.CodeList) {
            cd.setValueSet(new ValueSet());
            cd.getValueSet().setId(ref.substring(1));
            cd.getValueSet().setUrl("http://hl7.org/fhir/ValueSet/" + ref.substring(1));
            cd.getValueSet().setVersion(version);
            if (!Utilities.noString(sheet.getColumn(row, "Committee"))) {
                cd.getValueSet().addExtension().setUrl(ToolingExtensions.EXT_WORKGROUP).setValue(new CodeType(sheet.getColumn(row, "Committee").toLowerCase()));
            }
            cd.getValueSet().setUserData("filename", "valueset-" + cd.getValueSet().getId());
            cd.getValueSet().setUserData("path", "valueset-" + cd.getValueSet().getId() + ".html");
            cd.getValueSet().setName(cd.getName());
            cd.getValueSet().setTitle(cd.getName());
            cd.getValueSet().setDateElement(new DateTimeType(genDate));
            cd.getValueSet().setStatus(PublicationStatus.DRAFT);
            cd.getValueSet().setDescription(sheet.getColumn(row, "Description"));
            if (!cd.getValueSet().hasDescription())
                cd.getValueSet().setDescription(cd.getDefinition());
            if (!ref.startsWith("#"))
                throw new Exception("Error parsing binding " + cd.getName() + ": code list reference '" + ref + "' must started with '#'");
            Sheet cs = xls.getSheets().get(ref.substring(1));
            if (cs == null)
                throw new Exception("Error parsing binding " + cd.getName() + ": code list reference '" + ref + "' not resolved");
            new CodeListToValueSetParser(cs, ref.substring(1), cd.getValueSet(), version, codeSystems, maps, packageInfo).execute(sheet.getColumn(row, "v2"), sheet.getColumn(row, "v3"), utg);
        } else if (cd.getBinding() == BindingMethod.ValueSet) {
            if (ref.startsWith("http:")) {
                // will sort this out later
                cd.setReference(sheet.getColumn(row, "Reference"));
            } else
                cd.setValueSet(loadValueSet(ref, sheet.getColumn(row, "Committee").toLowerCase()));
            String max = sheet.getColumn(row, "Max");
            if (!Utilities.noString(max))
                if (max.startsWith("http:")) {
                    // will sort this out later
                    cd.setMaxReference(max);
                } else
                    cd.setMaxValueSet(loadValueSet(max, sheet.getColumn(row, "Committee").toLowerCase()));
        } else if (cd.getBinding() == BindingMethod.Special) {
            cd.setValueSet(new ValueSet());
            cd.getValueSet().setId(ref.substring(1));
            cd.getValueSet().setUrl("http://hl7.org/fhir/ValueSet/" + ref.substring(1));
            cd.getValueSet().setVersion(version);
            cd.getValueSet().setName(cd.getName());
        // do nothing more: this will get filled out once all the resources are loaded
        }
        // do this anyway in the short term
        cd.setReference(sheet.getColumn(row, "Reference"));
        if (cd.getValueSet() != null) {
            touchVS(cd.getValueSet());
            ValueSetUtilities.markStatus(cd.getValueSet(), Utilities.noString(sheet.getColumn(row, "Committee")) ? "vocab" : sheet.getColumn(row, "Committee").toLowerCase(), null, null, Utilities.noString(sheet.getColumn(row, "FMM")) ? null : sheet.getColumn(row, "FMM"), null, Utilities.noString(sheet.getColumn(row, "Normative-Version")) ? null : sheet.getColumn(row, "Normative-Version"));
        }
        if (cd.getMaxValueSet() != null) {
            touchVS(cd.getMaxValueSet());
            ValueSetUtilities.markStatus(cd.getMaxValueSet(), Utilities.noString(sheet.getColumn(row, "Committee")) ? "vocab" : sheet.getColumn(row, "Committee").toLowerCase(), null, null, Utilities.noString(sheet.getColumn(row, "FMM")) ? null : sheet.getColumn(row, "FMM"), null, Utilities.noString(sheet.getColumn(row, "Max-Normative-Version")) ? null : sheet.getColumn(row, "Max-Normative-Version"));
        }
        cd.setDescription(sheet.getColumn(row, "Description"));
        cd.setSource(filename);
        cd.setUri(sheet.getColumn(row, "Uri"));
        cd.setStrength(readBindingStrength(sheet.getColumn(row, "Conformance")));
        String oid = sheet.getColumn(row, "Oid");
        if (!Utilities.noString(oid))
            // no cs oid in this case
            cd.setVsOid(oid);
        cd.setWebSite(sheet.getColumn(row, "Website"));
        cd.setStatus(PublicationStatus.fromCode(sheet.getColumn(row, "Status")));
        cd.setEmail(sheet.getColumn(row, "Email"));
        cd.setV2Map(sheet.getColumn(row, "v2"));
        cd.setV3Map(sheet.getColumn(row, "v3"));
        if (cd.getBinding() == BindingMethod.Unbound) {
            cd.setStrength(BindingStrength.EXAMPLE);
        }
        results.add(cd);
    }
}

Example 32 with BindingSpecification

use of org.hl7.fhir.definitions.model.BindingSpecification in project kindling by HL7.

the class PageProcessor method processPageIncludesForPrinting.

String processPageIncludesForPrinting(String file, String src, Resource resource, ImplementationGuideDefn ig) throws Exception {
    boolean even = false;
    List<String> tabs = new ArrayList<String>();
    while (src.contains("<%") || src.contains("[%")) {
        int i1 = src.indexOf("<%");
        int i2 = src.indexOf("%>");
        if (i1 == -1) {
            i1 = src.indexOf("[%");
            i2 = src.indexOf("%]");
        }
        String s1 = src.substring(0, i1);
        String s2 = src.substring(i1 + 2, i2).trim();
        String s3 = src.substring(i2 + 2);
        String name = file.substring(0, file.indexOf("."));
        String[] com = s2.split(" ");
        if (com.length == 3 && com[0].equals("edt")) {
            if (tabs != null)
                tabs.add("tabs-" + com[1]);
            src = s1 + orgDT(com[1], xmlForDt(com[1], com[2]), treeForDt(com[1]), umlForDt(com[1], com[2]), umlForDt(com[1], com[2] + "b"), profileRef(com[1]), tsForDt(com[1]), jsonForDt(com[1], com[2]), ttlForDt(com[1], com[2]), diffForDt(com[1], com[2])) + s3;
        } else if (com.length == 2 && com[0].equals("dt")) {
            if (tabs != null)
                tabs.add("tabs-" + com[1]);
            src = s1 + xmlForDt(com[1], null) + tsForDt(com[1]) + s3;
        } else if (com.length == 2 && com[0].equals("adt")) {
            if (tabs != null)
                tabs.add("tabs-" + com[1]);
            src = s1 + xmlForDt(com[1], null) + tsForDt(com[1]) + s3;
        } else if (com.length == 2 && com[0].equals("dt.constraints"))
            src = s1 + genConstraints(com[1], "") + s3;
        else if (com.length == 2 && com[0].equals("dt.restrictions"))
            src = s1 + genRestrictions(com[1]) + s3;
        else if (com.length == 2 && com[0].equals("dictionary"))
            src = s1 + dictForDt(com[1]) + s3;
        else if (Utilities.existsInList(com[0], "pageheader", "dtheader", "atheader", "mdtheader", "edheader", "mmheader", "drheader", "elheader", "belheader", "extheader", "resourcesheader", "formatsheader", "narrheader", "refheader", "extrasheader", "profilesheader", "txheader", "txheader0", "fmtheader", "igheader", "cmpheader", "atomheader", "dictheader", "ctheader", "adheader", "pdheader", "tdheader", "cdheader", "diheader", "statheader", "ordistheader", "ucheader", "rrheader"))
            src = s1 + s3;
        else if (com[0].equals("resheader"))
            src = s1 + resHeader(name, "Document", com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("aresheader"))
            src = s1 + abstractResHeader(name, "Document", com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("codelist"))
            src = s1 + codelist((CodeSystem) resource, com.length > 1 ? com[1] : null, false, true, file) + s3;
        else if (com[0].equals("codelist-nh"))
            src = s1 + codelist((CodeSystem) resource, com.length > 1 ? com[1] : null, false, false, file) + s3;
        else if (com[0].equals("linkcodelist"))
            src = s1 + codelist((CodeSystem) resource, com.length > 1 ? com[1] : null, true, false, file) + s3;
        else if (com[0].equals("sct-vs-list"))
            src = s1 + getSnomedCTVsList() + s3;
        else if (com[0].equals("sct-concept-list"))
            src = s1 + getSnomedCTConceptList() + s3;
        else if (com[0].equals("codetoc"))
            src = s1 + codetoc(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("res-category")) {
            src = s1 + resCategory(s2.substring(com[0].length() + 1)) + s3;
            even = false;
        } else if (com[0].equals("res-item")) {
            even = !even;
            src = s1 + resItem(com[1], even) + s3;
        } else if (com[0].equals("resdesc")) {
            src = s1 + resDesc(com[1]) + s3;
        } else if (com[0].equals("rescat")) {
            src = s1 + resCat(com.length == 1 ? null : s2.substring(7)) + s3;
        } else if (com[0].equals("w5"))
            src = s1 + genW5("true".equals(com[1])) + s3;
        else if (com[0].equals("vs-warning"))
            src = s1 + vsWarning((ValueSet) resource) + s3;
        else if (com[0].equals("res-status-special"))
            src = s1 + vsSpecialStatus((DomainResource) resource) + s3;
        else if (com[0].equals("file")) {
            if (new File(folders.templateDir + com[1] + ".html").exists()) {
                src = s1 + TextFile.fileToString(folders.templateDir + com[1] + ".html") + s3;
            } else {
                src = s1 + TextFile.fileToString(folders.srcDir + com[1] + ".html") + s3;
            }
        } else if (com[0].equals("conceptmaplistvs")) {
            throw new Error("Fix this");
        // BindingSpecification bs = definitions.getBindingByName(Utilities.fileTitle(file));
        // String ref;
        // if (bs == null) {
        // ref = "http://hl7.org/fhir/ValueSet/"+Utilities.fileTitle(file);
        // } else {
        // ref = bs.getReference();
        // if (ref.startsWith("valueset-"))
        // ref = ref.substring(9);
        // ref = "http://hl7.org/fhir/ValueSet/"+ref;
        // }
        // src = s1 + conceptmaplist(ref, com[1]) + s3;
        } else if (com[0].equals("dtmappings"))
            src = s1 + genDataTypeMappings(com[1]) + s3;
        else if (com[0].equals("dtusage"))
            src = s1 + genDataTypeUsage(com[1]) + s3;
        else if (com[0].equals("othertabs"))
            src = s1 + genOtherTabs(com[1], tabs) + s3;
        else if (com[0].equals("toc"))
            src = s1 + generateToc() + s3;
        else if (com.length != 1)
            throw new Exception("Instruction <%" + s2 + "%> not understood parsing page " + file);
        else if (com[0].equals("newheader"))
            src = s1 + TextFile.fileToString(folders.srcDir + "newheader.html") + s3;
        else if (com[0].equals("newheader1"))
            src = s1 + TextFile.fileToString(folders.srcDir + "newheader1.html") + s3;
        else if (com[0].equals("footer"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer.html") + s3;
        else if (com[0].equals("newfooter"))
            src = s1 + TextFile.fileToString(folders.srcDir + "newfooter.html") + s3;
        else if (com[0].equals("footer1"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer1.html") + s3;
        else if (com[0].equals("footer2"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer2.html") + s3;
        else if (com[0].equals("footer3"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer3.html") + s3;
        else if (com[0].equals("title"))
            src = s1 + Utilities.escapeXml(name.toUpperCase().substring(0, 1) + name.substring(1)) + s3;
        else if (com[0].equals("xtitle"))
            src = s1 + Utilities.escapeXml(name.toUpperCase().substring(0, 1) + name.substring(1)) + s3;
        else if (com[0].equals("name"))
            src = s1 + name + s3;
        else if (com[0].equals("version"))
            src = s1 + ini.getStringProperty("FHIR", "version") + s3;
        else if (com[0].equals("gendate"))
            src = s1 + Config.DATE_FORMAT().format(new Date()) + s3;
        else if (com[0].equals("maindiv"))
            src = s1 + s3;
        else if (com[0].equals("/maindiv"))
            src = s1 + s3;
        else if (com[0].equals("enteredInErrorTable"))
            src = s1 + enteredInErrorTable() + s3;
        else if (com[0].equals("events"))
            src = s1 + getEventsTable(file) + s3;
        else if (com[0].equals("resourcecodes"))
            src = s1 + genResCodes() + s3;
        else if (com[0].equals("datatypecodes"))
            src = s1 + genDTCodes() + s3;
        else // src = s1 + genBindingTable(false) + s3;
        if (com[0].equals("codeslist"))
            src = s1 + genCodeSystemsTable() + s3;
        else if (com[0].equals("valuesetslist"))
            src = s1 + genValueSetsTable(ig) + s3;
        else if (com[0].equals("igvaluesetslist"))
            src = s1 + genIGValueSetsTable() + s3;
        else if (com[0].equals("namespacelist"))
            src = s1 + genNSList() + s3;
        else if (com[0].equals("resimplall"))
            src = s1 + genResImplList() + s3;
        else if (com[0].equals("txurl"))
            src = s1 + "http://hl7.org/fhir/" + Utilities.fileTitle(file) + s3;
        else if (com[0].equals("vstxurl"))
            src = s1 + "http://hl7.org/fhir/ValueSet/" + Utilities.fileTitle(file) + s3;
        else if (com[0].equals("csurl")) {
            if (resource instanceof CodeSystem)
                src = s1 + ((CodeSystem) resource).getUrl() + s3;
            else
                src = s1 + ((ValueSet) resource).getUrl() + s3;
        } else if (com[0].equals("vsurl")) {
            if (resource instanceof CodeSystem)
                src = s1 + ((CodeSystem) resource).getUrl() + s3;
            else
                src = s1 + ((ValueSet) resource).getUrl() + s3;
        } else if (com[0].equals("txdef"))
            src = s1 + generateCodeDefinition(Utilities.fileTitle(file)) + s3;
        else if (com[0].equals("vsxref"))
            src = s1 + xreferencesForFhir(name) + s3;
        else if (com[0].equals("vsdef"))
            if (resource instanceof CodeSystem)
                src = s1 + Utilities.escapeXml(((CodeSystem) resource).getDescription()) + s3;
            else
                src = s1 + Utilities.escapeXml(((ValueSet) resource).getDescription()) + s3;
        else if (com[0].equals("txusage"))
            src = s1 + generateValueSetUsage((ValueSet) resource, genlevel(0), true) + s3;
        else if (com[0].equals("vsusage"))
            src = s1 + generateValueSetUsage((ValueSet) resource, genlevel(0), true) + s3;
        else if (com[0].equals("csusage"))
            src = s1 + generateCSUsage((CodeSystem) resource, genlevel(0)) + s3;
        else if (com[0].equals("vssummary"))
            src = s1 + "todo" + s3;
        else if (com[0].equals("piperesources"))
            src = s1 + pipeResources() + s3;
        else if (com[0].equals("pub-type"))
            src = s1 + publicationType + s3;
        else // src = s1 + expandValueSet(Utilities.fileTitle(file), resource == null ? null : (ValueSet) resource) + s3;
        if (com[0].equals("vsexpansionig"))
            src = s1 + expandValueSetIG((ValueSet) resource, true) + s3;
        else if (com[0].equals("pub-notice"))
            src = s1 + publicationNotice + s3;
        else if (com[0].startsWith("!"))
            src = s1 + s3;
        else if (macros.containsKey(com[0])) {
            src = s1 + macros.get(com[0]) + s3;
        } else
            throw new Exception("Instruction <%" + s2 + "%> not understood parsing page " + file);
    }
    return src;
}