Examples with Organization org.hl7.fhir.r4.model.Organization used on opensource projects

Example 81 with Organization

use of org.hl7.fhir.r4.model.Organization in project nia-patient-switching-standard-adaptor by NHSDigital.

the class BundleMapperServiceTest method setup.

@BeforeEach
public void setup() {
    when(bundleGenerator.generateBundle()).thenReturn(new Bundle());
    var agentResourceList = new ArrayList<DomainResource>();
    agentResourceList.add(new Organization());
    List mockedList = mock(List.class);
    Map<String, List<? extends DomainResource>> encounterResources = new HashMap<>();
    encounterResources.put(ENCOUNTER_KEY, new ArrayList<>());
    encounterResources.put(CONSULTATION_KEY, new ArrayList<>());
    encounterResources.put(TOPIC_KEY, new ArrayList<>());
    encounterResources.put(CATEGORY_KEY, new ArrayList<>());
    when(agentDirectoryMapper.mapAgentDirectory(any())).thenReturn(mockedList);
    when(mockedList.stream()).thenReturn(agentResourceList.stream());
    when(patientMapper.mapToPatient(any(RCMRMT030101UK04Patient.class), any(Organization.class))).thenReturn(new Patient());
    when(encounterMapper.mapEncounters(any(RCMRMT030101UK04EhrExtract.class), any(Patient.class), any(String.class))).thenReturn(encounterResources);
    when(organizationMapper.mapAuthorOrganization(anyString())).thenReturn(new Organization());
}

Example 82 with Organization

use of org.hl7.fhir.r4.model.Organization in project CRD by HL7-DaVinci.

the class FhirBundleProcessor method createCriteriaList.

private List<CoverageRequirementRuleCriteria> createCriteriaList(CodeableConcept codeableConcept, List<Reference> insurance, List<Organization> payorList) {
    try {
        List<Coding> codings = codeableConcept.getCoding();
        if (codings.size() > 0) {
            logger.info("r4/FhirBundleProcessor::createCriteriaList: code[0]: " + codings.get(0).getCode() + " - " + codings.get(0).getSystem());
        } else {
            logger.info("r4/FhirBundleProcessor::createCriteriaList: empty codes list!");
        }
        List<Organization> payors = new ArrayList<>();
        if (insurance != null) {
            List<Coverage> coverages = insurance.stream().map(reference -> (Coverage) reference.getResource()).collect(Collectors.toList());
            // Remove null coverages that may not have resolved.
            coverages = coverages.stream().filter(coverage -> coverage != null).collect(Collectors.toList());
            payors = Utilities.getPayors(coverages);
        } else if (payorList != null) {
            payors = payorList;
        }
        if (payors.size() > 0) {
            logger.info("r4/FhirBundleProcessor::createCriteriaList: payer[0]: " + payors.get(0).getName());
        } else {
            // default to CMS if no payer was provided
            logger.info("r4/FhirBundleProcessor::createCriteriaList: empty payers list, working around by adding CMS!");
            Organization org = new Organization().setName("Centers for Medicare and Medicaid Services");
            // how to get ID
            org.setId("75f39025-65db-43c8-9127-693cdf75e712");
            payors.add(org);
        // remove the exception to use CMS if no payer is provided
        // JIRA ticket https://jira.mitre.org/browse/DMEERX-894
        // throw new RequestIncompleteException("No Payer found in coverage resource, cannot find documentation.");
        }
        List<CoverageRequirementRuleCriteria> criteriaList = CoverageRequirementRuleCriteria.createQueriesFromR4(codings, payors);
        return criteriaList;
    } catch (RequestIncompleteException e) {
        // rethrow incomplete request exceptions
        throw e;
    } catch (Exception e) {
        // catch all remaining exceptions
        System.out.println(e);
        throw new RequestIncompleteException("Unable to parse list of codes, codesystems, and payors from a device request.");
    }
}

Example 83 with Organization

use of org.hl7.fhir.r4.model.Organization in project nia-patient-switching-standard-adaptor by NHSDigital.

the class PatientMapper method mapToPatient.

public Patient mapToPatient(RCMRMT030101UK04Patient patient, Organization organization) {
    String nhsNumber = patient.getId().getExtension();
    Patient mappedPatient = createPatient(nhsNumber);
    if (organization != null) {
        mappedPatient.setManagingOrganization(new Reference(organization));
    }
    return mappedPatient;
}

Example 84 with Organization

use of org.hl7.fhir.r4.model.Organization in project nia-patient-switching-standard-adaptor by NHSDigital.

the class DocumentReferenceMapper method mapDocumentReference.

private DocumentReference mapDocumentReference(RCMRMT030101UK04NarrativeStatement narrativeStatement, RCMRMT030101UK04EhrComposition ehrComposition, Patient patient, RCMRMT030101UK04EhrExtract ehrExtract, List<Encounter> encounterList, Organization organization) {
    DocumentReference documentReference = new DocumentReference();
    var id = narrativeStatement.getReference().get(0).getReferredToExternalDocument().getId().getRoot();
    documentReference.addIdentifier(buildIdentifier(id, organization.getIdentifierFirstRep().getValue()));
    documentReference.setId(id);
    documentReference.getMeta().addProfile(META_PROFILE);
    documentReference.setStatus(DocumentReferenceStatus.CURRENT);
    documentReference.setType(getType(narrativeStatement));
    documentReference.setSubject(new Reference(patient));
    documentReference.setIndexedElement(getIndexed(ehrExtract));
    documentReference.setDescription(buildDescription(narrativeStatement));
    documentReference.setCustodian(new Reference(organization));
    getAuthor(narrativeStatement, ehrComposition).ifPresent(documentReference::addAuthor);
    if (narrativeStatement.hasAvailabilityTime() && narrativeStatement.getAvailabilityTime().hasValue()) {
        documentReference.setCreatedElement(DateFormatUtil.parseToDateTimeType(narrativeStatement.getAvailabilityTime().getValue()));
    }
    var encounterReference = encounterList.stream().filter(encounter -> encounter.getId().equals(ehrComposition.getId().getRoot())).findFirst().map(Reference::new);
    if (encounterReference.isPresent()) {
        DocumentReference.DocumentReferenceContextComponent documentReferenceContextComponent = new DocumentReference.DocumentReferenceContextComponent().setEncounter(encounterReference.get());
        documentReference.setContext(documentReferenceContextComponent);
    }
    setContentAttachments(documentReference, narrativeStatement);
    return documentReference;
}

Example 85 with Organization

use of org.hl7.fhir.r4.model.Organization in project nia-patient-switching-standard-adaptor by NHSDigital.

the class AgentDirectoryMapperTest method mapAgentDirectoryOnlyAgentOrganizationUnknownName.

@Test
public void mapAgentDirectoryOnlyAgentOrganizationUnknownName() {
    var agentDirectory = unmarshallAgentDirectoryElement("agent_org_no_name_example.xml");
    List mappedAgents = agentDirectoryMapper.mapAgentDirectory(agentDirectory);
    assertThat(mappedAgents.size()).isEqualTo(1);
    var organization = (Organization) mappedAgents.get(0);
    assertThat(organization.getId()).isEqualTo("1D9BDC28-50AB-440D-B421-0E5E049526FA");
    assertThat(organization.getMeta().getProfile().get(0).getValue()).isEqualTo(ORG_META_PROFILE);
    assertThat(organization.getName()).isEqualTo("Unknown");
    assertThat(organization.getIdentifier().size()).isEqualTo(0);
    assertThat(organization.getTelecom().size()).isEqualTo(0);
    assertThat(organization.getAddress().size()).isEqualTo(0);
}