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Example 36 with Patient

use of org.hl7.fhir.r4.model.Patient in project beneficiary-fhir-data by CMSgov.

the class PatientResourceProviderIT method searchForExistingPatientWithNoHistoryIncludeIdentifiersTrue.

/**
 * Verifies that {@link
 * gov.cms.bfd.server.war.stu3.providers.PatientResourceProvider#searchByIdentifier(ca.uhn.fhir.rest.param.TokenParam)}
 * works as expected for HICNs associated with {@link Beneficiary}s that have <strong>no</strong>
 * {@link BeneficiaryHistory} records.
 */
@Test
public void searchForExistingPatientWithNoHistoryIncludeIdentifiersTrue() {
    List<Object> loadedRecords = ServerTestUtils.get().loadData(Arrays.asList(StaticRifResource.SAMPLE_A_BENES));
    IGenericClient fhirClient = createFhirClient("true", "true");
    loadedRecords.stream().filter(r -> r instanceof Beneficiary).map(r -> (Beneficiary) r).forEach(h -> {
        Bundle searchResults = fhirClient.search().forResource(Patient.class).where(Patient.IDENTIFIER.exactly().systemAndIdentifier(TransformerConstants.CODING_BBAPI_BENE_HICN_HASH, h.getHicn())).returnBundle(Bundle.class).execute();
        assertNotNull(searchResults);
        assertEquals(1, searchResults.getTotal());
        Patient patientFromSearchResult = (Patient) searchResults.getEntry().get(0).getResource();
        assertEquals(h.getBeneficiaryId(), patientFromSearchResult.getIdElement().getIdPart());
    });
}
Also used : Assertions.assertThrows(org.junit.jupiter.api.Assertions.assertThrows) Assertions.fail(org.junit.jupiter.api.Assertions.fail) Assertions.assertNotNull(org.junit.jupiter.api.Assertions.assertNotNull) Arrays(java.util.Arrays) Bundle(org.hl7.fhir.dstu3.model.Bundle) StaticRifResource(gov.cms.bfd.model.rif.samples.StaticRifResource) Date(java.util.Date) Identifier(org.hl7.fhir.dstu3.model.Identifier) Assertions.assertNull(org.junit.jupiter.api.Assertions.assertNull) Constants(ca.uhn.fhir.rest.api.Constants) DateTimeDt(ca.uhn.fhir.model.primitive.DateTimeDt) RequestHeaders(gov.cms.bfd.server.war.commons.RequestHeaders) CCWUtils(gov.cms.bfd.server.war.commons.CCWUtils) PipelineTestUtils(gov.cms.bfd.pipeline.sharedutils.PipelineTestUtils) Assertions.assertFalse(org.junit.jupiter.api.Assertions.assertFalse) CriteriaUpdate(javax.persistence.criteria.CriteriaUpdate) BeforeAll(org.junit.jupiter.api.BeforeAll) CcwCodebookVariable(gov.cms.bfd.model.codebook.data.CcwCodebookVariable) CriteriaBuilder(javax.persistence.criteria.CriteriaBuilder) BeneficiaryHistory(gov.cms.bfd.model.rif.BeneficiaryHistory) Assertions.assertEquals(org.junit.jupiter.api.Assertions.assertEquals) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) ResourceNotFoundException(ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException) StaticRifResourceGroup(gov.cms.bfd.model.rif.samples.StaticRifResourceGroup) ServerTestUtils(gov.cms.bfd.server.war.ServerTestUtils) CommonHeaders(gov.cms.bfd.server.war.commons.CommonHeaders) Root(javax.persistence.criteria.Root) CriteriaQuery(javax.persistence.criteria.CriteriaQuery) Iterator(java.util.Iterator) TokenClientParam(ca.uhn.fhir.rest.gclient.TokenClientParam) InvalidRequestException(ca.uhn.fhir.rest.server.exceptions.InvalidRequestException) BeneficiaryMonthly_(gov.cms.bfd.model.rif.BeneficiaryMonthly_) MedicareBeneficiaryIdHistory(gov.cms.bfd.model.rif.MedicareBeneficiaryIdHistory) Instant(java.time.Instant) Collectors(java.util.stream.Collectors) BeneficiaryMonthly(gov.cms.bfd.model.rif.BeneficiaryMonthly) Test(org.junit.jupiter.api.Test) Beneficiary(gov.cms.bfd.model.rif.Beneficiary) List(java.util.List) AfterEach(org.junit.jupiter.api.AfterEach) TransformerConstants(gov.cms.bfd.server.war.commons.TransformerConstants) Stream(java.util.stream.Stream) Year(java.time.Year) Patient(org.hl7.fhir.dstu3.model.Patient) Assertions.assertTrue(org.junit.jupiter.api.Assertions.assertTrue) LocalDate(java.time.LocalDate) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) Bundle(org.hl7.fhir.dstu3.model.Bundle) Patient(org.hl7.fhir.dstu3.model.Patient) Beneficiary(gov.cms.bfd.model.rif.Beneficiary) Test(org.junit.jupiter.api.Test)

Example 37 with Patient

use of org.hl7.fhir.r4.model.Patient in project beneficiary-fhir-data by CMSgov.

the class PatientResourceProviderIT method searchForExistingPatientByMbiHashIncludeIdentifiersTrue.

/**
 * Verifies that {@link
 * gov.cms.bfd.server.war.stu3.providers.PatientResourceProvider#searchByIdentifier(ca.uhn.fhir.rest.param.TokenParam)}
 * works as expected for a {@link Patient} that does exist in the DB, including identifiers to
 * return the unhashed HICN and MBI.
 */
@Test
public void searchForExistingPatientByMbiHashIncludeIdentifiersTrue() {
    List<Object> loadedRecords = ServerTestUtils.get().loadData(Arrays.asList(StaticRifResourceGroup.SAMPLE_A.getResources()));
    IGenericClient fhirClient = createFhirClient("true", "true");
    Beneficiary beneficiary = loadedRecords.stream().filter(r -> r instanceof Beneficiary).map(r -> (Beneficiary) r).findFirst().get();
    Bundle searchResults = fhirClient.search().forResource(Patient.class).where(Patient.IDENTIFIER.exactly().systemAndIdentifier(TransformerConstants.CODING_BBAPI_BENE_MBI_HASH, beneficiary.getMbiHash().get())).returnBundle(Bundle.class).execute();
    assertNotNull(searchResults);
    Patient patientFromSearchResult = (Patient) searchResults.getEntry().get(0).getResource();
    /*
     * Ensure the unhashed values for HICN and MBI are present.
     */
    Boolean hicnUnhashedPresent = false;
    Boolean mbiUnhashedPresent = false;
    Iterator<Identifier> identifiers = patientFromSearchResult.getIdentifier().iterator();
    while (identifiers.hasNext()) {
        Identifier identifier = identifiers.next();
        if (identifier.getSystem().equals(TransformerConstants.CODING_BBAPI_BENE_HICN_UNHASHED))
            hicnUnhashedPresent = true;
        if (identifier.getSystem().equals(TransformerConstants.CODING_BBAPI_MEDICARE_BENEFICIARY_ID_UNHASHED))
            mbiUnhashedPresent = true;
    }
    assertTrue(hicnUnhashedPresent);
    assertTrue(mbiUnhashedPresent);
}
Also used : Assertions.assertThrows(org.junit.jupiter.api.Assertions.assertThrows) Assertions.fail(org.junit.jupiter.api.Assertions.fail) Assertions.assertNotNull(org.junit.jupiter.api.Assertions.assertNotNull) Arrays(java.util.Arrays) Bundle(org.hl7.fhir.dstu3.model.Bundle) StaticRifResource(gov.cms.bfd.model.rif.samples.StaticRifResource) Date(java.util.Date) Identifier(org.hl7.fhir.dstu3.model.Identifier) Assertions.assertNull(org.junit.jupiter.api.Assertions.assertNull) Constants(ca.uhn.fhir.rest.api.Constants) DateTimeDt(ca.uhn.fhir.model.primitive.DateTimeDt) RequestHeaders(gov.cms.bfd.server.war.commons.RequestHeaders) CCWUtils(gov.cms.bfd.server.war.commons.CCWUtils) PipelineTestUtils(gov.cms.bfd.pipeline.sharedutils.PipelineTestUtils) Assertions.assertFalse(org.junit.jupiter.api.Assertions.assertFalse) CriteriaUpdate(javax.persistence.criteria.CriteriaUpdate) BeforeAll(org.junit.jupiter.api.BeforeAll) CcwCodebookVariable(gov.cms.bfd.model.codebook.data.CcwCodebookVariable) CriteriaBuilder(javax.persistence.criteria.CriteriaBuilder) BeneficiaryHistory(gov.cms.bfd.model.rif.BeneficiaryHistory) Assertions.assertEquals(org.junit.jupiter.api.Assertions.assertEquals) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) ResourceNotFoundException(ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException) StaticRifResourceGroup(gov.cms.bfd.model.rif.samples.StaticRifResourceGroup) ServerTestUtils(gov.cms.bfd.server.war.ServerTestUtils) CommonHeaders(gov.cms.bfd.server.war.commons.CommonHeaders) Root(javax.persistence.criteria.Root) CriteriaQuery(javax.persistence.criteria.CriteriaQuery) Iterator(java.util.Iterator) TokenClientParam(ca.uhn.fhir.rest.gclient.TokenClientParam) InvalidRequestException(ca.uhn.fhir.rest.server.exceptions.InvalidRequestException) BeneficiaryMonthly_(gov.cms.bfd.model.rif.BeneficiaryMonthly_) MedicareBeneficiaryIdHistory(gov.cms.bfd.model.rif.MedicareBeneficiaryIdHistory) Instant(java.time.Instant) Collectors(java.util.stream.Collectors) BeneficiaryMonthly(gov.cms.bfd.model.rif.BeneficiaryMonthly) Test(org.junit.jupiter.api.Test) Beneficiary(gov.cms.bfd.model.rif.Beneficiary) List(java.util.List) AfterEach(org.junit.jupiter.api.AfterEach) TransformerConstants(gov.cms.bfd.server.war.commons.TransformerConstants) Stream(java.util.stream.Stream) Year(java.time.Year) Patient(org.hl7.fhir.dstu3.model.Patient) Assertions.assertTrue(org.junit.jupiter.api.Assertions.assertTrue) LocalDate(java.time.LocalDate) Identifier(org.hl7.fhir.dstu3.model.Identifier) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) Bundle(org.hl7.fhir.dstu3.model.Bundle) Patient(org.hl7.fhir.dstu3.model.Patient) Beneficiary(gov.cms.bfd.model.rif.Beneficiary) Test(org.junit.jupiter.api.Test)

Example 38 with Patient

use of org.hl7.fhir.r4.model.Patient in project beneficiary-fhir-data by CMSgov.

the class PatientResourceProviderIT method searchForExistingPatientByHicnHashIncludeIdentifiersTrue.

/**
 * Verifies that {@link
 * gov.cms.bfd.server.war.stu3.providers.PatientResourceProvider#searchByIdentifier(ca.uhn.fhir.rest.param.TokenParam)}
 * works as expected for a {@link Patient} that does exist in the DB, including identifiers to
 * return the unhashed HICN and MBI.
 */
@Test
public void searchForExistingPatientByHicnHashIncludeIdentifiersTrue() {
    List<Object> loadedRecords = ServerTestUtils.get().loadData(Arrays.asList(StaticRifResourceGroup.SAMPLE_A.getResources()));
    IGenericClient fhirClient = createFhirClient("true", "true");
    Beneficiary beneficiary = loadedRecords.stream().filter(r -> r instanceof Beneficiary).map(r -> (Beneficiary) r).findFirst().get();
    Bundle searchResults = fhirClient.search().forResource(Patient.class).where(Patient.IDENTIFIER.exactly().systemAndIdentifier(TransformerConstants.CODING_BBAPI_BENE_HICN_HASH, beneficiary.getHicn())).returnBundle(Bundle.class).execute();
    assertNotNull(searchResults);
    Patient patientFromSearchResult = (Patient) searchResults.getEntry().get(0).getResource();
    /*
     * Ensure the unhashed values for HICN and MBI are present.
     */
    Boolean hicnUnhashedPresent = false;
    Boolean mbiUnhashedPresent = false;
    Iterator<Identifier> identifiers = patientFromSearchResult.getIdentifier().iterator();
    while (identifiers.hasNext()) {
        Identifier identifier = identifiers.next();
        if (identifier.getSystem().equals(TransformerConstants.CODING_BBAPI_BENE_HICN_UNHASHED))
            hicnUnhashedPresent = true;
        if (identifier.getSystem().equals(TransformerConstants.CODING_BBAPI_MEDICARE_BENEFICIARY_ID_UNHASHED))
            mbiUnhashedPresent = true;
    }
    assertTrue(hicnUnhashedPresent);
    assertTrue(mbiUnhashedPresent);
}
Also used : Assertions.assertThrows(org.junit.jupiter.api.Assertions.assertThrows) Assertions.fail(org.junit.jupiter.api.Assertions.fail) Assertions.assertNotNull(org.junit.jupiter.api.Assertions.assertNotNull) Arrays(java.util.Arrays) Bundle(org.hl7.fhir.dstu3.model.Bundle) StaticRifResource(gov.cms.bfd.model.rif.samples.StaticRifResource) Date(java.util.Date) Identifier(org.hl7.fhir.dstu3.model.Identifier) Assertions.assertNull(org.junit.jupiter.api.Assertions.assertNull) Constants(ca.uhn.fhir.rest.api.Constants) DateTimeDt(ca.uhn.fhir.model.primitive.DateTimeDt) RequestHeaders(gov.cms.bfd.server.war.commons.RequestHeaders) CCWUtils(gov.cms.bfd.server.war.commons.CCWUtils) PipelineTestUtils(gov.cms.bfd.pipeline.sharedutils.PipelineTestUtils) Assertions.assertFalse(org.junit.jupiter.api.Assertions.assertFalse) CriteriaUpdate(javax.persistence.criteria.CriteriaUpdate) BeforeAll(org.junit.jupiter.api.BeforeAll) CcwCodebookVariable(gov.cms.bfd.model.codebook.data.CcwCodebookVariable) CriteriaBuilder(javax.persistence.criteria.CriteriaBuilder) BeneficiaryHistory(gov.cms.bfd.model.rif.BeneficiaryHistory) Assertions.assertEquals(org.junit.jupiter.api.Assertions.assertEquals) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) ResourceNotFoundException(ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException) StaticRifResourceGroup(gov.cms.bfd.model.rif.samples.StaticRifResourceGroup) ServerTestUtils(gov.cms.bfd.server.war.ServerTestUtils) CommonHeaders(gov.cms.bfd.server.war.commons.CommonHeaders) Root(javax.persistence.criteria.Root) CriteriaQuery(javax.persistence.criteria.CriteriaQuery) Iterator(java.util.Iterator) TokenClientParam(ca.uhn.fhir.rest.gclient.TokenClientParam) InvalidRequestException(ca.uhn.fhir.rest.server.exceptions.InvalidRequestException) BeneficiaryMonthly_(gov.cms.bfd.model.rif.BeneficiaryMonthly_) MedicareBeneficiaryIdHistory(gov.cms.bfd.model.rif.MedicareBeneficiaryIdHistory) Instant(java.time.Instant) Collectors(java.util.stream.Collectors) BeneficiaryMonthly(gov.cms.bfd.model.rif.BeneficiaryMonthly) Test(org.junit.jupiter.api.Test) Beneficiary(gov.cms.bfd.model.rif.Beneficiary) List(java.util.List) AfterEach(org.junit.jupiter.api.AfterEach) TransformerConstants(gov.cms.bfd.server.war.commons.TransformerConstants) Stream(java.util.stream.Stream) Year(java.time.Year) Patient(org.hl7.fhir.dstu3.model.Patient) Assertions.assertTrue(org.junit.jupiter.api.Assertions.assertTrue) LocalDate(java.time.LocalDate) Identifier(org.hl7.fhir.dstu3.model.Identifier) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) Bundle(org.hl7.fhir.dstu3.model.Bundle) Patient(org.hl7.fhir.dstu3.model.Patient) Beneficiary(gov.cms.bfd.model.rif.Beneficiary) Test(org.junit.jupiter.api.Test)

Example 39 with Patient

use of org.hl7.fhir.r4.model.Patient in project beneficiary-fhir-data by CMSgov.

the class BeneficiaryTransformerTest method transformBeneficiaryWithAllOptionalsEmpty.

/**
 * Verifies that {@link gov.cms.bfd.server.war.stu3.providers.BeneficiaryTransformer} works
 * correctly when passed a {@link Beneficiary} where all {@link Optional} fields are set to {@link
 * Optional#empty()}.
 */
@Test
public void transformBeneficiaryWithAllOptionalsEmpty() {
    List<Object> parsedRecords = ServerTestUtils.parseData(Arrays.asList(StaticRifResourceGroup.SAMPLE_A.getResources()));
    Beneficiary beneficiary = parsedRecords.stream().filter(r -> r instanceof Beneficiary).map(r -> (Beneficiary) r).findFirst().get();
    TransformerTestUtils.setAllOptionalsToEmpty(beneficiary);
    RequestHeaders requestHeader = getRHwithIncldIdntityHdr("");
    Patient patient = BeneficiaryTransformer.transform(new MetricRegistry(), beneficiary, requestHeader);
    assertMatches(beneficiary, patient, requestHeader);
}
Also used : SkippedRifRecord(gov.cms.bfd.model.rif.SkippedRifRecord) Arrays(java.util.Arrays) StaticRifResource(gov.cms.bfd.model.rif.samples.StaticRifResource) Identifier(org.hl7.fhir.dstu3.model.Identifier) Assertions.assertNull(org.junit.jupiter.api.Assertions.assertNull) RequestHeaders(gov.cms.bfd.server.war.commons.RequestHeaders) CCWUtils(gov.cms.bfd.server.war.commons.CCWUtils) Sex(gov.cms.bfd.server.war.commons.Sex) CcwCodebookVariable(gov.cms.bfd.model.codebook.data.CcwCodebookVariable) BeneficiaryHistory(gov.cms.bfd.model.rif.BeneficiaryHistory) Assertions.assertEquals(org.junit.jupiter.api.Assertions.assertEquals) StaticRifResourceGroup(gov.cms.bfd.model.rif.samples.StaticRifResourceGroup) ServerTestUtils(gov.cms.bfd.server.war.ServerTestUtils) MetricRegistry(com.codahale.metrics.MetricRegistry) Set(java.util.Set) MedicareBeneficiaryIdHistory(gov.cms.bfd.model.rif.MedicareBeneficiaryIdHistory) Instant(java.time.Instant) Collectors(java.util.stream.Collectors) Test(org.junit.jupiter.api.Test) AdministrativeGender(org.hl7.fhir.dstu3.model.Enumerations.AdministrativeGender) Beneficiary(gov.cms.bfd.model.rif.Beneficiary) List(java.util.List) TransformerConstants(gov.cms.bfd.server.war.commons.TransformerConstants) Patient(org.hl7.fhir.dstu3.model.Patient) Optional(java.util.Optional) MetricRegistry(com.codahale.metrics.MetricRegistry) Patient(org.hl7.fhir.dstu3.model.Patient) RequestHeaders(gov.cms.bfd.server.war.commons.RequestHeaders) Beneficiary(gov.cms.bfd.model.rif.Beneficiary) Test(org.junit.jupiter.api.Test)

Example 40 with Patient

use of org.hl7.fhir.r4.model.Patient in project beneficiary-fhir-data by CMSgov.

the class BeneficiaryTransformerTest method transformSampleARecordWithoutLastUpdated.

/**
 * Verifies that {@link
 * gov.cms.bfd.server.war.stu3.providers.BeneficiaryTransformer#transform(Beneficiary)} works as
 * expected when run against the {@link StaticRifResource#SAMPLE_A_BENES} {@link Beneficiary} with
 * a lastUpdated field not set.
 */
@Test
public void transformSampleARecordWithoutLastUpdated() {
    Beneficiary beneficiary = loadSampleABeneficiary();
    beneficiary.setLastUpdated(Optional.empty());
    RequestHeaders requestHeader = getRHwithIncldIdntityHdr("");
    Patient patient = BeneficiaryTransformer.transform(new MetricRegistry(), beneficiary, requestHeader);
    assertMatches(beneficiary, patient, requestHeader);
}
Also used : MetricRegistry(com.codahale.metrics.MetricRegistry) Patient(org.hl7.fhir.dstu3.model.Patient) RequestHeaders(gov.cms.bfd.server.war.commons.RequestHeaders) Beneficiary(gov.cms.bfd.model.rif.Beneficiary) Test(org.junit.jupiter.api.Test)

Aggregations

Test (org.junit.Test)576 Test (org.junit.jupiter.api.Test)442 Patient (org.hl7.fhir.r4.model.Patient)437 IBaseResource (org.hl7.fhir.instance.model.api.IBaseResource)255 HashMap (java.util.HashMap)251 Patient (org.hl7.fhir.dstu3.model.Patient)249 IBundleProvider (ca.uhn.fhir.rest.api.server.IBundleProvider)228 Bundle (org.hl7.fhir.r4.model.Bundle)203 Path (javax.ws.rs.Path)188 Date (java.util.Date)171 Produces (javax.ws.rs.Produces)163 ArrayList (java.util.ArrayList)156 JsonObject (javax.json.JsonObject)141 SearchParameterMap (org.openmrs.module.fhir2.api.search.param.SearchParameterMap)140 MockHttpServletResponse (org.springframework.mock.web.MockHttpServletResponse)138 ReferenceParam (ca.uhn.fhir.rest.param.ReferenceParam)137 ReferenceAndListParam (ca.uhn.fhir.rest.param.ReferenceAndListParam)128 ReferenceOrListParam (ca.uhn.fhir.rest.param.ReferenceOrListParam)128 BaseModuleContextSensitiveTest (org.openmrs.test.BaseModuleContextSensitiveTest)125 SpringBootTest (org.springframework.boot.test.context.SpringBootTest)120