Examples with Reference org.hl7.fhir.r4.model.Reference used on opensource projects

Example 36 with Reference

use of org.hl7.fhir.r4.model.Reference in project kindling by HL7.

the class Publisher method genExampleUsage.

private String genExampleUsage(Example e, String prefix) {
    if (e.getInbounds().isEmpty())
        return "";
    else {
        StringBuilder b = new StringBuilder();
        b.append("<p>\r\nOther examples that reference this example:</p>\r\n");
        List<String> names = new ArrayList<String>();
        for (Example x : e.getInbounds()) names.add(x.getResourceName() + ":" + x.getId());
        Collections.sort(names);
        for (String n : names) {
            Example x = null;
            for (Example y : e.getInbounds()) if (n.equals(y.getResourceName() + ":" + y.getId()))
                x = y;
            b.append("<li><a href=\"");
            b.append(prefix);
            if (x.getIg() != null) {
                ImplementationGuideDefn ig = page.getDefinitions().getIgs().get(x.getIg());
                if (ig != null && !ig.isCore()) {
                    b.append(ig.getCode());
                    b.append("/");
                }
            }
            b.append(x.getTitle() + ".html");
            b.append("\">");
            b.append(x.getResourceName() + "/" + x.getName());
            b.append("</a></li>\r\n");
        }
        b.append("</ul>\r\n");
        return b.toString();
    }
}

Example 37 with Reference

use of org.hl7.fhir.r4.model.Reference in project kindling by HL7.

the class Publisher method checkExampleLinks.

private void checkExampleLinks(List<ValidationMessage> errors, ResourceDefn r) throws Exception {
    for (Example e : r.getExamples()) {
        try {
            if (e.getXml() != null) {
                List<ExampleReference> refs = new ArrayList<ExampleReference>();
                listLinks(e.getXml().getDocumentElement(), refs);
                for (ExampleReference ref : refs) {
                    if (!ref.isExempt() && !resolveLink(ref, e)) {
                        String path = ref.getPath().replace("/f:", ".").substring(1) + " (example " + e.getTitle() + ")";
                        if (ref.hasType() && page.getDefinitions().hasResource(ref.getType())) {
                            errors.add(new ValidationMessage(Source.ExampleValidator, IssueType.BUSINESSRULE, -1, -1, path, "Unable to resolve example reference to " + ref.getRef() + " in " + e.getTitle() + " (Possible Ids: " + listTargetIds(ref.getType()) + ")", "Unable to resolve example reference to " + ref.getRef() + " in <a href=\"" + e.getTitle() + ".html" + "\">" + e.getTitle() + "</a> (Possible Ids: " + listTargetIds(ref.getType()) + ")", IssueSeverity.INFORMATION));
                        } else {
                            String regex = "((http|https)://([A-Za-z0-9\\\\\\/\\.\\:\\%\\$])*)?(" + page.pipeResources() + ")\\/" + FormatUtilities.ID_REGEX + "(\\/_history\\/" + FormatUtilities.ID_REGEX + ")?";
                            if (ref.getRef().matches(regex)) {
                                errors.add(new ValidationMessage(Source.ExampleValidator, IssueType.BUSINESSRULE, -1, -1, path, "Unable to resolve example reference " + ref.getRef() + " in " + e.getTitle(), "Unable to resolve example reference " + ref.getRef() + " in <a href=\"" + e.getTitle() + ".html" + "\">" + e.getTitle() + "</a>", IssueSeverity.INFORMATION));
                            } else {
                                errors.add(new ValidationMessage(Source.ExampleValidator, IssueType.BUSINESSRULE, -1, -1, path, "Unable to resolve invalid example reference " + ref.getRef() + " in " + e.getTitle(), "Unable to resolve invalid example reference " + ref.getRef() + " in <a href=\"" + e.getTitle() + ".html" + "\">" + e.getTitle() + "</a>", IssueSeverity.WARNING));
                            }
                        }
                    // System.out.println("unresolved reference "+ref.getRef()+" at "+path);
                    }
                }
            }
        } catch (Exception ex) {
            throw new Exception("Error checking example " + e.getTitle() + ":" + ex.getMessage(), ex);
        }
    }
}

Example 38 with Reference

use of org.hl7.fhir.r4.model.Reference in project kindling by HL7.

the class PageProcessor method genDTCodes.

private String genDTCodes() {
    StringBuilder html = new StringBuilder();
    List<String> names = new ArrayList<String>();
    names.addAll(definitions.getTypes().keySet());
    names.addAll(definitions.getInfrastructure().keySet());
    Collections.sort(names);
    for (String n : names) {
        if (!definitions.dataTypeIsSharedInfo(n)) {
            ElementDefn c = definitions.getTypes().get(n);
            if (c == null)
                c = definitions.getInfrastructure().get(n);
            if (c.getName().equals("Extension"))
                html.append("  <tr><td><a href=\"extensibility.html\">" + c.getName() + "</a></td><td>" + Utilities.escapeXml(c.getDefinition()) + "</td></tr>");
            else if (c.getName().equals("Narrative"))
                html.append("  <tr><td><a href=\"narrative.html#" + c.getName() + "\">" + c.getName() + "</a></td><td>" + Utilities.escapeXml(c.getDefinition()) + "</td></tr>");
            else if (c.getName().equals("Reference"))
                html.append("  <tr><td><a href=\"references.html#" + c.getName() + "\">" + c.getName() + "</a></td><td>" + Utilities.escapeXml(c.getDefinition()) + "</td></tr>");
            else if (c.getName().equals("canonical"))
                html.append("  <tr><td><a href=\"references.html#" + c.getName() + "\">" + c.getName() + "</a></td><td>" + Utilities.escapeXml(c.getDefinition()) + "</td></tr>");
            else
                html.append("  <tr><td><a href=\"datatypes.html#" + c.getName() + "\">" + c.getName() + "</a></td><td>" + Utilities.escapeXml(c.getDefinition()) + "</td></tr>");
        }
    }
    return html.toString();
}

Example 39 with Reference

use of org.hl7.fhir.r4.model.Reference in project kindling by HL7.

the class BookMaker method fixReferences.

private void fixReferences(XhtmlNode parent, XhtmlNode node, String name) throws Exception {
    List<XhtmlNode> wantDelete = new ArrayList<XhtmlNode>();
    for (XhtmlNode child : node.getChildNodes()) {
        if (child.getNodeType() == NodeType.Element) {
            if ("index-only-no-book".equals(child.getAttribute("class")))
                wantDelete.add(child);
            else
                fixReferences(node, child, name);
        }
    }
    for (XhtmlNode c : wantDelete) node.getChildNodes().remove(c);
    if (node.getName().equals("a")) {
        if (node.getAttributes().containsKey("name")) {
            String lname = node.getAttributes().get("name");
            node.getAttributes().put("name", name + "." + lname);
        // System.out.println("found anchor "+name+"."+lname);
        } else if (node.getAttribute("href") != null || node.getAttributes().get("xlink:href") != null) {
            String s = node.getAttributes().get("href");
            if (s == null || s.length() == 0)
                s = node.getAttributes().get("xlink:href");
            if (s == null || s.length() == 0)
                throw new Error("empty \"href\" element in \"a\" tag around " + parent.allText());
            if (s.startsWith("#")) {
                s = "#" + name + "." + s.substring(1);
            } else if (s.startsWith("http:") || s.startsWith("https:") || s.startsWith("ftp:") || s.startsWith("mailto:")) {
            // s = s;
            } else {
                int i = s.indexOf('.');
                if (i == -1)
                    throw new Error("unable to understand ref: '" + s + "' on '" + node.allText() + "'");
                if (s.contains("#")) {
                    int j = s.indexOf('#');
                    s = "#" + s.substring(0, i) + "." + s.substring(j + 1);
                } else if (s.endsWith(".html")) {
                    s = "#" + s.substring(0, i);
                } else {
                    if (!s.endsWith(".zip") && !s.endsWith(".xsd") && !s.endsWith(".xml") && !s.endsWith(".json") && !s.endsWith(".png") && !s.endsWith(".xml") && !s.endsWith(".eap") && !s.endsWith(".xmi")) {
                        System.out.println("odd ref: " + s + " in " + node.allText());
                    // s = s;
                    } else {
                    // actually, what we want to do is do what?
                    // System.out.println("ref to remove: "+s+" in "+node.allText());
                    // Utilities.copyFile(new File(page.getFolders().dstDir+s), new File(targetBin+File.separatorChar+s));
                    // s = "http://hl7.org/documentcenter/public/standards/FHIR"+DSTU_PATH_PORTION+"/v"+page.getVersion()+"/"+s;
                    }
                }
            }
            node.getAttributes().put("href", s);
            if (s.startsWith("http") && parent != null && !node.allText().equals(s)) {
                node.addText(" (" + s + ") ");
            }
        // System.out.println("reference to "+s);
        }
    }
}

Example 40 with Reference

use of org.hl7.fhir.r4.model.Reference in project kindling by HL7.

the class TypeParser method convert.

public List<TypeRefComponent> convert(IWorkerContext context, String path, List<TypeRef> types, boolean resource, ElementDefinition ed) throws Exception {
    List<TypeRefComponent> list = new ArrayList<TypeRefComponent>();
    for (TypeRef t : types) {
        // Expand any Resource(A|B|C) references
        if (t.hasParams() && !("Reference".equals(t.getName()) || "canonical".equals(t.getName()))) {
            throw new Exception("Only resource references can specify parameters.  Path " + path);
        }
        if (t.getParams().size() > 0) {
            if (t.getProfile() != null && t.getParams().size() != 1) {
                throw new Exception("Cannot declare profile on a resource reference declaring multiple resource types.  Path " + path);
            }
            if (t.getProfile() != null) {
                TypeRefComponent childType = getTypeComponent(list, t.getName());
                if (t.getVersioning() != null)
                    childType.setVersioning(t.getVersioning());
                if (t.getName().equals("Reference") || t.getName().equals("canonical"))
                    childType.addTargetProfile(t.getProfile());
                else
                    childType.addProfile(t.getProfile());
            } else
                for (String param : t.getParams()) {
                    TypeRefComponent childType = getTypeComponent(list, t.getName());
                    if (t.getVersioning() != null)
                        childType.setVersioning(t.getVersioning());
                    String p = "Any".equals(param) ? "Resource" : param;
                    if (t.getName().equals("Reference") || t.getName().equals("canonical"))
                        childType.addTargetProfile("http://hl7.org/fhir/StructureDefinition/" + p);
                    else
                        childType.addProfile("http://hl7.org/fhir/StructureDefinition/" + p);
                }
        } else if (t.isWildcardType()) {
            // this list is filled out manually because it may be running before the types referred to have been loaded
            for (String n : TypesUtilities.wildcardTypes(version)) {
                TypeRefComponent tc = new TypeRefComponent().setCode(n);
                if (t.getVersioning() != null)
                    tc.setVersioning(t.getVersioning());
                list.add(tc);
            }
        } else if (Utilities.noString(t.getName()) && t.getProfile() != null) {
            StructureDefinition sd = context.fetchResource(StructureDefinition.class, t.getProfile());
            TypeRefComponent tc = getTypeComponent(list, sd != null ? sd.getType() : t.getName());
            if (t.getVersioning() != null)
                tc.setVersioning(t.getVersioning());
            if (t.getName().equals("Reference"))
                tc.addTargetProfile(t.getProfile());
            else
                tc.addProfile(t.getProfile());
        } else if (t.getName().startsWith("=")) {
            if (resource)
                list.add(new TypeRefComponent().setCode("BackboneElement"));
            else
                list.add(new TypeRefComponent().setCode("Element"));
            ToolingExtensions.addStringExtension(ed, "http://hl7.org/fhir/StructureDefinition/structuredefinition-explicit-type-name", t.getName().substring(1));
        } else {
            StructureDefinition sd = context.fetchTypeDefinition(t.getName());
            if (sd == null)
                throw new Exception("Unknown type '" + t.getName() + "'");
            TypeRefComponent tc = getTypeComponent(list, sd.getType());
            if (t.getVersioning() != null)
                tc.setVersioning(t.getVersioning());
            if (t.getName().equals("Reference")) {
                if (t.hasProfile())
                    tc.addTargetProfile(t.getProfile());
            } else if (t.hasProfile())
                tc.addProfile(t.getProfile());
        }
    }
    // no duplicates
    for (TypeRefComponent tr1 : list) {
        for (TypeRefComponent tr2 : list) {
            if (tr1 != tr2) {
                if (tr1.getWorkingCode().equals(tr2.getWorkingCode()))
                    throw new Exception("duplicate code " + tr1.getWorkingCode());
            }
        }
    }
    return list;
}