Examples with Specimen org.hl7.fhir.r4.model.Specimen used on opensource projects

Example 16 with Specimen

use of org.hl7.fhir.r4.model.Specimen in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeObservation.

protected void composeObservation(Complex parent, String parentType, String name, Observation element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeDomainResource(t, "Observation", name, element, index);
    for (int i = 0; i < element.getIdentifier().size(); i++) composeIdentifier(t, "Observation", "identifier", element.getIdentifier().get(i), i);
    for (int i = 0; i < element.getBasedOn().size(); i++) composeReference(t, "Observation", "basedOn", element.getBasedOn().get(i), i);
    for (int i = 0; i < element.getPartOf().size(); i++) composeReference(t, "Observation", "partOf", element.getPartOf().get(i), i);
    if (element.hasStatusElement())
        composeEnum(t, "Observation", "status", element.getStatusElement(), -1);
    for (int i = 0; i < element.getCategory().size(); i++) composeCodeableConcept(t, "Observation", "category", element.getCategory().get(i), i);
    if (element.hasCode())
        composeCodeableConcept(t, "Observation", "code", element.getCode(), -1);
    if (element.hasSubject())
        composeReference(t, "Observation", "subject", element.getSubject(), -1);
    for (int i = 0; i < element.getFocus().size(); i++) composeReference(t, "Observation", "focus", element.getFocus().get(i), i);
    if (element.hasEncounter())
        composeReference(t, "Observation", "encounter", element.getEncounter(), -1);
    if (element.hasEffective())
        composeType(t, "Observation", "effective", element.getEffective(), -1);
    if (element.hasIssuedElement())
        composeInstant(t, "Observation", "issued", element.getIssuedElement(), -1);
    for (int i = 0; i < element.getPerformer().size(); i++) composeReference(t, "Observation", "performer", element.getPerformer().get(i), i);
    if (element.hasValue())
        composeType(t, "Observation", "value", element.getValue(), -1);
    if (element.hasDataAbsentReason())
        composeCodeableConcept(t, "Observation", "dataAbsentReason", element.getDataAbsentReason(), -1);
    for (int i = 0; i < element.getInterpretation().size(); i++) composeCodeableConcept(t, "Observation", "interpretation", element.getInterpretation().get(i), i);
    for (int i = 0; i < element.getNote().size(); i++) composeAnnotation(t, "Observation", "note", element.getNote().get(i), i);
    if (element.hasBodySite())
        composeCodeableConcept(t, "Observation", "bodySite", element.getBodySite(), -1);
    if (element.hasMethod())
        composeCodeableConcept(t, "Observation", "method", element.getMethod(), -1);
    if (element.hasSpecimen())
        composeReference(t, "Observation", "specimen", element.getSpecimen(), -1);
    if (element.hasDevice())
        composeReference(t, "Observation", "device", element.getDevice(), -1);
    for (int i = 0; i < element.getReferenceRange().size(); i++) composeObservationObservationReferenceRangeComponent(t, "Observation", "referenceRange", element.getReferenceRange().get(i), i);
    for (int i = 0; i < element.getHasMember().size(); i++) composeReference(t, "Observation", "hasMember", element.getHasMember().get(i), i);
    for (int i = 0; i < element.getDerivedFrom().size(); i++) composeReference(t, "Observation", "derivedFrom", element.getDerivedFrom().get(i), i);
    for (int i = 0; i < element.getComponent().size(); i++) composeObservationObservationComponentComponent(t, "Observation", "component", element.getComponent().get(i), i);
}

Example 17 with Specimen

use of org.hl7.fhir.r4.model.Specimen in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeSpecimenSpecimenContainerComponent.

protected void composeSpecimenSpecimenContainerComponent(Complex parent, String parentType, String name, Specimen.SpecimenContainerComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "container", name, element, index);
    for (int i = 0; i < element.getIdentifier().size(); i++) composeIdentifier(t, "Specimen", "identifier", element.getIdentifier().get(i), i);
    if (element.hasDescriptionElement())
        composeString(t, "Specimen", "description", element.getDescriptionElement(), -1);
    if (element.hasType())
        composeCodeableConcept(t, "Specimen", "type", element.getType(), -1);
    if (element.hasCapacity())
        composeQuantity(t, "Specimen", "capacity", element.getCapacity(), -1);
    if (element.hasSpecimenQuantity())
        composeQuantity(t, "Specimen", "specimenQuantity", element.getSpecimenQuantity(), -1);
    if (element.hasAdditive())
        composeType(t, "Specimen", "additive", element.getAdditive(), -1);
}

Example 18 with Specimen

use of org.hl7.fhir.r4.model.Specimen in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeSpecimen.

protected void composeSpecimen(Complex parent, String parentType, String name, Specimen element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeDomainResource(t, "Specimen", name, element, index);
    for (int i = 0; i < element.getIdentifier().size(); i++) composeIdentifier(t, "Specimen", "identifier", element.getIdentifier().get(i), i);
    if (element.hasAccessionIdentifier())
        composeIdentifier(t, "Specimen", "accessionIdentifier", element.getAccessionIdentifier(), -1);
    if (element.hasStatusElement())
        composeEnum(t, "Specimen", "status", element.getStatusElement(), -1);
    if (element.hasType())
        composeCodeableConcept(t, "Specimen", "type", element.getType(), -1);
    if (element.hasSubject())
        composeReference(t, "Specimen", "subject", element.getSubject(), -1);
    if (element.hasReceivedTimeElement())
        composeDateTime(t, "Specimen", "receivedTime", element.getReceivedTimeElement(), -1);
    for (int i = 0; i < element.getParent().size(); i++) composeReference(t, "Specimen", "parent", element.getParent().get(i), i);
    for (int i = 0; i < element.getRequest().size(); i++) composeReference(t, "Specimen", "request", element.getRequest().get(i), i);
    if (element.hasCollection())
        composeSpecimenSpecimenCollectionComponent(t, "Specimen", "collection", element.getCollection(), -1);
    for (int i = 0; i < element.getProcessing().size(); i++) composeSpecimenSpecimenProcessingComponent(t, "Specimen", "processing", element.getProcessing().get(i), i);
    for (int i = 0; i < element.getContainer().size(); i++) composeSpecimenSpecimenContainerComponent(t, "Specimen", "container", element.getContainer().get(i), i);
    for (int i = 0; i < element.getCondition().size(); i++) composeCodeableConcept(t, "Specimen", "condition", element.getCondition().get(i), i);
    for (int i = 0; i < element.getNote().size(); i++) composeAnnotation(t, "Specimen", "note", element.getNote().get(i), i);
}

Example 19 with Specimen

use of org.hl7.fhir.r4.model.Specimen in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeSpecimenSpecimenProcessingComponent.

protected void composeSpecimenSpecimenProcessingComponent(Complex parent, String parentType, String name, Specimen.SpecimenProcessingComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "processing", name, element, index);
    if (element.hasDescriptionElement())
        composeString(t, "Specimen", "description", element.getDescriptionElement(), -1);
    if (element.hasProcedure())
        composeCodeableConcept(t, "Specimen", "procedure", element.getProcedure(), -1);
    for (int i = 0; i < element.getAdditive().size(); i++) composeReference(t, "Specimen", "additive", element.getAdditive().get(i), i);
    if (element.hasTime())
        composeType(t, "Specimen", "time", element.getTime(), -1);
}

Example 20 with Specimen

use of org.hl7.fhir.r4.model.Specimen in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeSpecimenSpecimenCollectionComponent.

protected void composeSpecimenSpecimenCollectionComponent(Complex parent, String parentType, String name, Specimen.SpecimenCollectionComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "collection", name, element, index);
    if (element.hasCollector())
        composeReference(t, "Specimen", "collector", element.getCollector(), -1);
    if (element.hasCollected())
        composeType(t, "Specimen", "collected", element.getCollected(), -1);
    if (element.hasDuration())
        composeDuration(t, "Specimen", "duration", element.getDuration(), -1);
    if (element.hasQuantity())
        composeQuantity(t, "Specimen", "quantity", element.getQuantity(), -1);
    if (element.hasMethod())
        composeCodeableConcept(t, "Specimen", "method", element.getMethod(), -1);
    if (element.hasBodySite())
        composeCodeableConcept(t, "Specimen", "bodySite", element.getBodySite(), -1);
    if (element.hasFastingStatus())
        composeType(t, "Specimen", "fastingStatus", element.getFastingStatus(), -1);
}