use of io.github.linuxforhealth.api.ResourceModel in project hl7v2-fhir-converter by LinuxForHealth.
the class Hl7MessageTest method test_observation.
@Test
void test_observation() throws IOException {
ResourceModel rsm = ResourceReader.getInstance().generateResourceModel("resource/Observation");
HL7FHIRResourceTemplateAttributes attributes = new HL7FHIRResourceTemplateAttributes.Builder().withResourceName("Observation").withResourceModel(rsm).withSegment("OBX").withIsReferenced(true).withRepeats(false).build();
HL7FHIRResourceTemplate observation = new HL7FHIRResourceTemplate(attributes);
HL7MessageModel message = new HL7MessageModel("ADT", Lists.newArrayList(observation));
String hl7message = "MSH|^~\\&|hl7Integration|hl7Integration|||||ADT^A01|||2.3|\r" + "EVN|A01|20130617154644\r" + "PID|1|465 306 5961|000010016^^^MR~000010017^^^MR~000010018^^^MR|407623|Wood^Patrick^^Sr^MR||19700101|female|||High Street^^Oxford^^Ox1 4DP~George St^^Oxford^^Ox1 5AP|||||||\r" + "NK1|1|Wood^John^^^MR|Father||999-9999\r" + "NK1|2|Jones^Georgie^^^MSS|MOTHER||999-9999\r" + "PV1|1||Location||||||||||||||||261938_6_201306171546|||||||||||||||||||||||||20130617134644|||||||||\r" + "OBX|1|NM|0135-4^TotalProtein||7.3|gm/dl|5.9-8.4||||F|||||2740^Tsadok^Janetary~2913^Merrit^Darren^F~3065^Mahoney^Paul^J~4723^Loh^Robert^L~9052^Winter^Oscar^|\r";
String json = message.convert(hl7message, engine);
IBaseResource bundleResource = context.getParser().parseResource(json);
assertThat(bundleResource).isNotNull();
Bundle b = (Bundle) bundleResource;
List<BundleEntryComponent> e = b.getEntry();
// We expect observation because not TX in OBX
List<Resource> obsResource = e.stream().filter(v -> ResourceType.Observation == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
assertThat(obsResource).hasSize(1);
List<Resource> pracResource = e.stream().filter(v -> ResourceType.Practitioner == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
assertThat(pracResource).hasSize(5);
}
use of io.github.linuxforhealth.api.ResourceModel in project hl7v2-fhir-converter by LinuxForHealth.
the class Hl7MessageTest method test_specimen_multiple.
@Test
void test_specimen_multiple() throws IOException {
ResourceModel rsm = ResourceReader.getInstance().generateResourceModel("resource/Specimen");
HL7FHIRResourceTemplateAttributes attributes = new HL7FHIRResourceTemplateAttributes.Builder().withResourceName("Specimen").withResourceModel(rsm).withSegment("SPM").withIsReferenced(true).withRepeats(true).build();
HL7FHIRResourceTemplate specimen = new HL7FHIRResourceTemplate(attributes);
HL7MessageModel message = new HL7MessageModel("ORU", Lists.newArrayList(specimen));
String hl7message = "MSH|^~\\&|Amalga HIS|BUM|New Tester|MS|20111121103141||ORU^R01|2847970-201111211031|P|2.6|||AL|NE|764|ASCII||||||^4086::132:2A57:3C28^IPv6\r" + "EVN|A01|20130617154644\r" + "PID|1|465 306 5961|000010016^^^MR~000010017^^^MR~000010018^^^MR|407623|Wood^Patrick^^Sr^MR||19700101|female|||High Street^^Oxford^^Ox1 4DP~George St^^Oxford^^Ox1 5AP|||||||\r" + "NK1|1|Wood^John^^^MR|Father||999-9999\r" + "NK1|2|Jones^Georgie^^^MSS|MOTHER||999-9999\r" + "PV1|1||Location||||||||||||||||261938_6_201306171546|||||||||||||||||||||||||20130617134644|||||||||\r" + "OBX|1|TX|1234||First line: ECHOCARDIOGRAPHIC REPORT||||||F|||||2740^Tsadok^Janetary~2913^Merrit^Darren^F~3065^Mahoney^Paul^J~4723^Loh^Robert^L~9052^Winter^Oscar^|\r" + "SPM|1|SpecimenID||BLOOD^Blood^^87612001^BLOOD^SCT^^||||Cord Art^Blood, Cord Arterial^^^^^^^|||P||||||201110060535|201110060821||Y||||||1\r" + "SPM|2|SpecimenID||BLD|||||||P||||||201110060535|201110060821||Y||||||1";
String json = message.convert(hl7message, engine);
IBaseResource bundleResource = context.getParser().parseResource(json);
assertThat(bundleResource).isNotNull();
Bundle b = (Bundle) bundleResource;
List<BundleEntryComponent> e = b.getEntry();
List<Resource> spmResource = e.stream().filter(v -> ResourceType.Specimen == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
assertThat(spmResource).hasSize(2);
}
use of io.github.linuxforhealth.api.ResourceModel in project hl7v2-fhir-converter by LinuxForHealth.
the class Hl7MessageTest method test_encounter_with_observation.
@Test
void test_encounter_with_observation() throws IOException {
ResourceModel rsm = ResourceReader.getInstance().generateResourceModel("resource/Patient");
HL7FHIRResourceTemplateAttributes attributes = new HL7FHIRResourceTemplateAttributes.Builder().withResourceName("Patient").withResourceModel(rsm).withSegment("PID").withIsReferenced(true).withRepeats(false).build();
HL7FHIRResourceTemplate patient = new HL7FHIRResourceTemplate(attributes);
ResourceModel encounter = ResourceReader.getInstance().generateResourceModel("resource/Encounter");
HL7FHIRResourceTemplateAttributes attributesEncounter = new HL7FHIRResourceTemplateAttributes.Builder().withResourceName("Encounter").withResourceModel(encounter).withSegment("PV1").withIsReferenced(true).withRepeats(false).withAdditionalSegments(Lists.newArrayList("PV2", "OBX")).build();
HL7FHIRResourceTemplate encounterFH = new HL7FHIRResourceTemplate(attributesEncounter);
ResourceModel obsModel = ResourceReader.getInstance().generateResourceModel("resource/Observation");
HL7FHIRResourceTemplateAttributes attributesObs = new HL7FHIRResourceTemplateAttributes.Builder().withResourceName("Observation").withResourceModel(obsModel).withSegment("OBX").withIsReferenced(true).withRepeats(true).build();
HL7FHIRResourceTemplate obsTemplate = new HL7FHIRResourceTemplate(attributesObs);
HL7MessageModel message = new HL7MessageModel("ADT", Lists.newArrayList(patient, encounterFH, obsTemplate));
String hl7message = "MSH|^~\\&|SE050|050|PACS|050|20120912011230||ADT^A01|102|T|2.6|||AL|NE|764|ASCII||||||^4086::132:2A57:3C28^IPv6\r" + "EVN||201209122222\r" + "PID|0010||PID1234^5^M11^A^MR^HOSP~1234568965^^^USA^SS||DOE^JOHN^A^||19800202|F||W|111 TEST_STREET_NAME^^TEST_CITY^NY^111-1111^USA||(905)111-1111|||S|ZZ|12^^^124|34-13-312||||TEST_BIRTH_PLACE\r" + "PV1|1|ff|yyy|EL|ABC||200^ATTEND_DOC_FAMILY_TEST^ATTEND_DOC_GIVEN_TEST|201^REFER_DOC_FAMILY_TEST^REFER_DOC_GIVEN_TEST|202^CONSULTING_DOC_FAMILY_TEST^CONSULTING_DOC_GIVEN_TEST|MED|||||B6|E|272^ADMITTING_DOC_FAMILY_TEST^ADMITTING_DOC_GIVEN_TEST||48390|||||||||||||||||||||||||201409122200|20150206031726\r" + "OBX|1|NM|0135-4^TotalProtein||7.3|gm/dl|5.9-8.4||||F|||||2740^TRDSE^Janetary~2913^MRTTE^Darren^F~3065^MGHOBT^Paul^J~4723^LOTHDEW^Robert^L|\r" + "AL1|1|DRUG|00000741^OXYCODONE||HYPOTENSION\r" + "AL1|2|DRUG|00001433^TRAMADOL||SEIZURES~VOMITING\r";
String json = message.convert(hl7message, engine);
LOGGER.debug(json);
IBaseResource bundleResource = context.getParser().parseResource(json);
assertThat(bundleResource).isNotNull();
Bundle b = (Bundle) bundleResource;
List<BundleEntryComponent> e = b.getEntry();
List<Resource> obsResource = e.stream().filter(v -> ResourceType.Observation == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
assertThat(obsResource).hasSize(1);
List<Resource> pracResource = e.stream().filter(v -> ResourceType.Practitioner == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
assertThat(pracResource).hasSize(8);
List<Resource> encounterResource = e.stream().filter(v -> ResourceType.Encounter == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
assertThat(encounterResource).hasSize(1);
Encounter encounterRes = ResourceUtils.getResourceEncounter(encounterResource.get(0), context);
Reference patRef = encounterRes.getSubject();
assertThat(patRef.isEmpty()).isFalse();
List<Reference> obsRef = encounterRes.getReasonReference();
assertThat(obsRef).hasSize(1);
}
use of io.github.linuxforhealth.api.ResourceModel in project hl7v2-fhir-converter by LinuxForHealth.
the class Hl7MessageTest method test_patient.
@Test
void test_patient() throws IOException {
ResourceModel rsm = ResourceReader.getInstance().generateResourceModel("resource/Patient");
HL7FHIRResourceTemplateAttributes attributes = new HL7FHIRResourceTemplateAttributes.Builder().withResourceName("Patient").withResourceModel(rsm).withSegment("PID").withIsReferenced(false).withRepeats(false).build();
HL7FHIRResourceTemplate patient = new HL7FHIRResourceTemplate(attributes);
HL7MessageModel message = new HL7MessageModel("ADT", Lists.newArrayList(patient));
String hl7message = "MSH|^~\\&|hl7Integration|hl7Integration|||||ADT^A01|||2.3|\r" + "EVN|A01|20130617154644\r" + "PID|1|465 306 5961|000010016^^^MR~000010017^^^MR~000010018^^^MR|407623|Wood^Patrick^^Sr^MR||19700101|female|||High Street^^Oxford^^Ox1 4DP~George St^^Oxford^^Ox1 5AP|||||||\r" + "NK1|1|Wood^John^^^MR|Father||999-9999\r" + "NK1|2|Jones^Georgie^^^MSS|MOTHER||999-9999\r" + "PV1|1||Location||||||||||||||||261938_6_201306171546|||||||||||||||||||||||||20130617134644|||||||||";
String json = message.convert(hl7message, engine);
assertThat(json).isNotBlank();
IBaseResource bundleResource = context.getParser().parseResource(json);
assertThat(bundleResource).isNotNull();
Bundle b = (Bundle) bundleResource;
List<BundleEntryComponent> e = b.getEntry();
List<Resource> patientResource = e.stream().filter(v -> ResourceType.Patient == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
assertThat(patientResource).hasSize(1);
}
use of io.github.linuxforhealth.api.ResourceModel in project hl7v2-fhir-converter by LinuxForHealth.
the class Hl7MessageTest method test_patient_encounter.
@Test
void test_patient_encounter() throws IOException {
ResourceModel rsm = ResourceReader.getInstance().generateResourceModel("resource/Patient");
HL7FHIRResourceTemplateAttributes attributes = new HL7FHIRResourceTemplateAttributes.Builder().withResourceName("Patient").withResourceModel(rsm).withSegment("PID").withIsReferenced(true).withRepeats(false).build();
HL7FHIRResourceTemplate patient = new HL7FHIRResourceTemplate(attributes);
ResourceModel encounter = ResourceReader.getInstance().generateResourceModel("resource/Encounter");
HL7FHIRResourceTemplateAttributes attributesEncounter = new HL7FHIRResourceTemplateAttributes.Builder().withResourceName("Encounter").withResourceModel(encounter).withSegment("PV1").withIsReferenced(true).withRepeats(false).withAdditionalSegments(Lists.newArrayList("PV2")).build();
HL7FHIRResourceTemplate encounterFH = new HL7FHIRResourceTemplate(attributesEncounter);
HL7MessageModel message = new HL7MessageModel("ADT", Lists.newArrayList(patient, encounterFH));
String hl7message = "MSH|^~\\&|SE050|050|PACS|050|201209121212||ADT^A01|102|T|2.7|||AL|NE\r" + "EVN||201209122222\r" + "PID|||1234^^^^SR^20021212^20200120~1234-12^^^^LR^~3872^^^^MR~221345671^^^^SS^~430078856^^^^MA^||KENNEDY^JOHN^FITZGERALD^JR^^^L| BOUVIER^^^^^^M|19900607|M|KENNEDY^BABYBOY^^^^^^B|2106-3^linuxforhealthTE^HL70005|123 MAIN ST^APT 3B^LEXINGTON^MA^00210^^M^MSA CODE^MA034~345 ELM\r" + "PV1|1|ff|yyy|EL|||200^ATTEND_DOC_FAMILY_TEST^ATTEND_DOC_GIVEN_TEST|201^REFER_DOC_FAMILY_TEST^REFER_DOC_GIVEN_TEST|202^CONSULTING_DOC_FAMILY_TEST^CONSULTING_DOC_GIVEN_TEST|MED|||||B6|E|272^ADMITTING_DOC_FAMILY_TEST^ADMITTING_DOC_GIVEN_TEST||48390|||||||||||||||||||||||||201409122200|20000206031726\r" + "AL1|0001|DA|98798^problem|SV|sneeze|20120808\r";
String json = message.convert(hl7message, engine);
assertThat(json).isNotBlank();
IBaseResource bundleResource = context.getParser().parseResource(json);
assertThat(bundleResource).isNotNull();
Bundle b = (Bundle) bundleResource;
List<BundleEntryComponent> e = b.getEntry();
List<Resource> patientResource = e.stream().filter(v -> ResourceType.Patient == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
assertThat(patientResource).hasSize(1);
List<Resource> encounterResource = e.stream().filter(v -> ResourceType.Encounter == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
assertThat(encounterResource).hasSize(1);
Encounter enc = ResourceUtils.getResourceEncounter(encounterResource.get(0), context);
Reference ref = enc.getSubject();
assertThat(ref.isEmpty()).isFalse();
}
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