Examples with ResourceModel io.github.linuxforhealth.api.ResourceModel used on opensource projects

Example 11 with ResourceModel

use of io.github.linuxforhealth.api.ResourceModel in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7MessageTest method test_observation_condition.

@Test
void test_observation_condition() throws IOException {
    ResourceModel obsModel = ResourceReader.getInstance().generateResourceModel("resource/Observation");
    HL7FHIRResourceTemplateAttributes attributesObs = new HL7FHIRResourceTemplateAttributes.Builder().withResourceName("Observation").withResourceModel(obsModel).withSegment(".PROBLEM_OBSERVATION.OBX").withIsReferenced(true).withRepeats(true).withGroup("PROBLEM").build();
    HL7FHIRResourceTemplate obsTemplate = new HL7FHIRResourceTemplate(attributesObs);
    ResourceModel condModel = ResourceReader.getInstance().generateResourceModel("resource/Condition");
    HL7FHIRResourceTemplateAttributes attributesCond = new HL7FHIRResourceTemplateAttributes.Builder().withResourceName("Condition").withResourceModel(condModel).withSegment(".PRB").withIsReferenced(false).withRepeats(true).withGroup("PROBLEM").build();
    HL7FHIRResourceTemplate conditionTemplate = new HL7FHIRResourceTemplate(attributesCond);
    HL7MessageModel message = new HL7MessageModel("ADT", Lists.newArrayList(obsTemplate, conditionTemplate));
    String hl7message = "MSH|^~\\&|SendTest1|Sendfac1|Receiveapp1|Receivefac1|200603081747|security|PPR^PC1^PPR_PC1|1|P^I|2.6||||||ASCII||\r" + "PID|||555444222111^^^MPI&GenHosp&L^MR||james^anderson||19600614|M||C|99 Oakland #106^^qwerty^OH^44889||^^^^^626^5641111|^^^^^626^5647654|||||343132266|||N\r" + "PV1||I|6N^1234^A^GENHOS||||0100^ANDERSON^CARL|0148^ADDISON^JAMES||SUR|||||||0148^ANDERSON^CARL|S|1400|A|||||||||||||||||||SF|K||||199501102300\r" + "PRB|AD|200603150625|aortic stenosis|53692||2||200603150625\r" + "NTE|1|P|Problem Comments\r" + "VAR|varid1|200603150610\r" + // Two observation records
    "OBX|1|ST|0135-4^TotalProtein||6.4|gm/dl|5.9-8.4||||F|||||2740^Tsadok^Janetary~2913^Merrit^Darren^F|\r" + "OBX|2|ST|0135-4^TotalProtein||7.8|gm/dl|5.9-8.4||||F|||||2740^Tsadok^Janetary~2913^Merrit^Darren^F|\r";
    String json = message.convert(hl7message, engine);
    assertThat(json).isNotBlank();
    IBaseResource bundleResource = context.getParser().parseResource(json);
    assertThat(bundleResource).isNotNull();
    Bundle b = (Bundle) bundleResource;
    List<BundleEntryComponent> e = b.getEntry();
    List<Resource> observationResource = e.stream().filter(v -> ResourceType.Observation == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
    assertThat(observationResource).hasSize(2);
    List<String> ids = observationResource.stream().map(m -> m.getId()).collect(Collectors.toList());
    List<Resource> conditionResource = e.stream().filter(v -> ResourceType.Condition == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
    assertThat(conditionResource).hasSize(1);
    Condition cond = ResourceUtils.getResourceCondition(conditionResource.get(0), context);
    List<ConditionEvidenceComponent> evidences = cond.getEvidence();
    assertThat(evidences).hasSize(2);
    assertThat(evidences.get(0).hasDetail()).isTrue();
    assertThat(evidences.get(0).getDetail().get(0).getReference()).isIn(ids);
    assertThat(evidences.get(1).getDetail().get(0).getReference()).isIn(ids);
    assertThat(evidences.get(0).getDetail().get(0).getReference()).isNotEqualTo(evidences.get(1).getDetail().get(0).getReference());
}

Example 12 with ResourceModel

use of io.github.linuxforhealth.api.ResourceModel in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7MessageTest method test_messageHeader_with_ADT.

@Test
void test_messageHeader_with_ADT() throws IOException {
    ResourceModel rsm = ResourceReader.getInstance().generateResourceModel("resource/MessageHeader");
    HL7FHIRResourceTemplateAttributes attributes = new HL7FHIRResourceTemplateAttributes.Builder().withResourceName("MessageHeader").withResourceModel(rsm).withSegment("MSH").withIsReferenced(false).withRepeats(false).build();
    HL7FHIRResourceTemplate messageHeaderTemplate = new HL7FHIRResourceTemplate(attributes);
    HL7MessageModel message = new HL7MessageModel("ADT", Lists.newArrayList(messageHeaderTemplate));
    String hl7message = "MSH|^~\\&|Amalga HIS|BUM|New Tester|MS|20111121103141||ADT^A01|2847970-201111211031|P|2.6|||AL|NE|764|||||||^4086::132:2A57:3C28^IPv6\r" + "EVN|A01|20130617154644\r" + "PID|1|465 306 5961|000010016^^^MR~000010017^^^MR~000010018^^^MR|407623|Wood^Patrick^^Sr^MR||19700101|female|||High Street^^Oxford^^Ox1 4DP~George St^^Oxford^^Ox1 5AP|||||||\r" + "NK1|1|Wood^John^^^MR|Father||999-9999\r" + "NK1|2|Jones^Georgie^^^MSS|MOTHER||999-9999\r" + "PV1|1||Location||||||||||||||||261938_6_201306171546|||||||||||||||||||||||||20130617134644|||||||||";
    String json = message.convert(hl7message, engine);
    assertThat(json).isNotBlank();
    IBaseResource bundleResource = context.getParser().parseResource(json);
    assertThat(bundleResource).isNotNull();
    Bundle b = (Bundle) bundleResource;
    List<BundleEntryComponent> e = b.getEntry();
    List<Resource> messageHeader = e.stream().filter(v -> ResourceType.MessageHeader == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
    assertThat(messageHeader).hasSize(1);
    MessageHeader msgH = ResourceUtils.getResourceMessageHeader(messageHeader.get(0), context);
    assertThat(msgH.getId()).isNotNull();
    assertThat(msgH.getEventCoding()).isNotNull();
    assertThat(msgH.getEventCoding().getSystem()).isEqualTo("http://terminology.hl7.org/CodeSystem/v2-0003");
    assertThat(msgH.getEventCoding().getCode()).isEqualTo("A01");
    assertThat(msgH.getEventCoding().getDisplay()).isEqualTo("ADT/ACK - Admit/visit notification");
    assertThat(msgH.getDestination()).hasSize(1);
    assertThat(msgH.getDestinationFirstRep().getName()).isEqualTo("New Tester");
    assertThat(msgH.getDestinationFirstRep().getEndpoint()).isEqualTo("MS");
    assertThat(msgH.getSource()).isNotNull();
    assertThat(msgH.getSource().getName()).isEqualTo("Amalga HIS");
    assertThat(msgH.getReason()).isNotNull();
    assertThat(msgH.getReason().getCoding().get(0).getSystem()).isEqualTo("http://terminology.hl7.org/CodeSystem/message-reasons-encounter");
    assertThat(msgH.getReason().getCoding().get(0).getCode()).isEqualTo("admit");
    assertThat(msgH.getReason().getCoding().get(0).getDisplay()).isEqualTo("Admit");
}

Example 13 with ResourceModel

use of io.github.linuxforhealth.api.ResourceModel in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7MessageTest method test_patient_encounter_only.

@Test
void test_patient_encounter_only() throws IOException {
    ResourceModel encounter = ResourceReader.getInstance().generateResourceModel("resource/Encounter");
    HL7FHIRResourceTemplateAttributes attributesEncounter = new HL7FHIRResourceTemplateAttributes.Builder().withResourceName("Encounter").withResourceModel(encounter).withSegment("PV1").withIsReferenced(false).withRepeats(false).withAdditionalSegments(Lists.newArrayList("PV2")).build();
    HL7FHIRResourceTemplate encounterFH = new HL7FHIRResourceTemplate(attributesEncounter);
    HL7MessageModel message = new HL7MessageModel("ADT", Lists.newArrayList(encounterFH));
    String hl7message = "MSH|^~\\&|SE050|050|PACS|050|201209121212||ADT^A01|102|T|2.7|||AL|NE\r" + "EVN||201209122222\r" + "PID|0010||ADTNew^^^1231||ADT01New||19800202|F||W|111 TEST_STREET_NAME^^TEST_CITY^NY^111-1111^USA||(905)111-1111|||S|ZZ|12^^^124|34-13-312||||TEST_BIRTH_PLACE\r" + "PV1|1|ff|Location|EL|||200^ATTEND_DOC_FAMILY_TEST^ATTEND_DOC_GIVEN_TEST|201^REFER_DOC_FAMILY_TEST^REFER_DOC_GIVEN_TEST|202^CONSULTING_DOC_FAMILY_TEST^CONSULTING_DOC_GIVEN_TEST|MED|||||B6|E|272^ADMITTING_DOC_FAMILY_TEST^ADMITTING_DOC_GIVEN_TEST||48390|||||||||||||||||||||||||201409122200|20000206031726\r" + "AL1|0001|DA|98798^problem|SV|sneeze|20120808\r";
    String json = message.convert(hl7message, engine);
    assertThat(json).isNotBlank();
    IBaseResource bundleResource = context.getParser().parseResource(json);
    assertThat(bundleResource).isNotNull();
    Bundle b = (Bundle) bundleResource;
    List<BundleEntryComponent> e = b.getEntry();
    List<Resource> encounterResource = e.stream().filter(v -> ResourceType.Encounter == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
    assertThat(encounterResource).hasSize(1);
}

Example 14 with ResourceModel

use of io.github.linuxforhealth.api.ResourceModel in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7MessageTest method test_condition.

@Test
void test_condition() throws IOException {
    ResourceModel rsm = ResourceReader.getInstance().generateResourceModel("resource/Condition");
    HL7FHIRResourceTemplateAttributes attributes = new HL7FHIRResourceTemplateAttributes.Builder().withResourceName("Condition").withResourceModel(rsm).withSegment("PRB").withIsReferenced(true).withRepeats(false).build();
    HL7FHIRResourceTemplate conditionTemplate = new HL7FHIRResourceTemplate(attributes);
    HL7MessageModel message = new HL7MessageModel("ADT", Lists.newArrayList(conditionTemplate));
    String hl7message = "MSH|^~\\&|hl7Integration|hl7Integration|||||ADT^A01|||2.3|\r" + "EVN|A01|20130617154644\r" + "PID|1|465 306 5961|000010016^^^MR~000010017^^^MR~000010018^^^MR|407623|Wood^Patrick^^Sr^MR||19700101|female|||High Street^^Oxford^^Ox1 4DP~George St^^Oxford^^Ox1 5AP|||||||\r" + "NK1|1|Wood^John^^^MR|Father||999-9999\r" + "NK1|2|Jones^Georgie^^^MSS|MOTHER||999-9999\r" + "PV1|1||Location||||||||||||||||261938_6_201306171546|||||||||||||||||||||||||20130617134644|||||||||\r" + "PRB|AD|200603150625|aortic stenosis|53692||2||200603150625";
    String json = message.convert(hl7message, engine);
    IBaseResource bundleResource = context.getParser().parseResource(json);
    assertThat(bundleResource).isNotNull();
    Bundle b = (Bundle) bundleResource;
    List<BundleEntryComponent> e = b.getEntry();
    List<Resource> cond = e.stream().filter(v -> ResourceType.Condition == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
    assertThat(cond).hasSize(1);
}

Example 15 with ResourceModel

use of io.github.linuxforhealth.api.ResourceModel in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7MessageTest method test_observation_NM_result.

@Test
void test_observation_NM_result() throws IOException {
    ResourceModel rsm = ResourceReader.getInstance().generateResourceModel("resource/Observation");
    HL7FHIRResourceTemplateAttributes attributes = new HL7FHIRResourceTemplateAttributes.Builder().withResourceName("Observation").withResourceModel(rsm).withSegment("OBX").withIsReferenced(true).withRepeats(false).build();
    HL7FHIRResourceTemplate observation = new HL7FHIRResourceTemplate(attributes);
    HL7MessageModel message = new HL7MessageModel("ADT", Lists.newArrayList(observation));
    String hl7message = "MSH|^~\\&|hl7Integration|hl7Integration|||||ADT^A01|||2.3|\r" + "EVN|A01|20130617154644\r" + "PID|1|465 306 5961|000010016^^^MR~000010017^^^MR~000010018^^^MR|407623|Wood^Patrick^^Sr^MR||19700101|female|||High Street^^Oxford^^Ox1 4DP~George St^^Oxford^^Ox1 5AP|||||||\r" + "NK1|1|Wood^John^^^MR|Father||999-9999\r" + "NK1|2|Jones^Georgie^^^MSS|MOTHER||999-9999\r" + "PV1|1||Location||||||||||||||||261938_6_201306171546|||||||||||||||||||||||||20130617134644|||||||||\r" + "OBX|1|NM|0135-4^TotalProtein||7.3|gm/dl|5.9-8.4||||F";
    String json = message.convert(hl7message, engine);
    IBaseResource bundleResource = context.getParser().parseResource(json);
    assertThat(bundleResource).isNotNull();
    Bundle b = (Bundle) bundleResource;
    List<BundleEntryComponent> e = b.getEntry();
    List<Resource> obsResource = e.stream().filter(v -> ResourceType.Observation == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
    assertThat(obsResource).hasSize(1);
    Observation obs = (Observation) obsResource.get(0);
    assertThat(obs.getValueQuantity()).isNotNull();
}