Examples with Specimen org.hl7.fhir.r4.model.Specimen used on opensource projects

Example 36 with Specimen

use of org.hl7.fhir.r4.model.Specimen in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeSpecimenSpecimenCollectionComponent.

protected void composeSpecimenSpecimenCollectionComponent(Complex parent, String parentType, String name, Specimen.SpecimenCollectionComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "collection", name, element, index);
    if (element.hasCollector())
        composeReference(t, "Specimen", "collector", element.getCollector(), -1);
    if (element.hasCommentElement())
        composeString(t, "Specimen", "comment", element.getCommentElement(), -1);
    if (element.hasCollected())
        composeType(t, "Specimen", "collected", element.getCollected(), -1);
    if (element.hasQuantity())
        composeQuantity(t, "Specimen", "quantity", element.getQuantity(), -1);
    if (element.hasMethod())
        composeCodeableConcept(t, "Specimen", "method", element.getMethod(), -1);
    if (element.hasBodySite())
        composeCodeableConcept(t, "Specimen", "bodySite", element.getBodySite(), -1);
}

Example 37 with Specimen

use of org.hl7.fhir.r4.model.Specimen in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeSpecimenSpecimenTreatmentComponent.

protected void composeSpecimenSpecimenTreatmentComponent(Complex parent, String parentType, String name, Specimen.SpecimenTreatmentComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "treatment", name, element, index);
    if (element.hasDescriptionElement())
        composeString(t, "Specimen", "description", element.getDescriptionElement(), -1);
    if (element.hasProcedure())
        composeCodeableConcept(t, "Specimen", "procedure", element.getProcedure(), -1);
    for (int i = 0; i < element.getAdditive().size(); i++) composeReference(t, "Specimen", "additive", element.getAdditive().get(i), i);
}

Example 38 with Specimen

use of org.hl7.fhir.r4.model.Specimen in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeSpecimenSpecimenCollectionComponent.

protected void composeSpecimenSpecimenCollectionComponent(Complex parent, String parentType, String name, Specimen.SpecimenCollectionComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "collection", name, element, index);
    if (element.hasCollector())
        composeReference(t, "Specimen", "collector", element.getCollector(), -1);
    if (element.hasCollected())
        composeType(t, "Specimen", "collected", element.getCollected(), -1);
    if (element.hasQuantity())
        composeQuantity(t, "Specimen", "quantity", element.getQuantity(), -1);
    if (element.hasMethod())
        composeCodeableConcept(t, "Specimen", "method", element.getMethod(), -1);
    if (element.hasBodySite())
        composeCodeableConcept(t, "Specimen", "bodySite", element.getBodySite(), -1);
}

Example 39 with Specimen

use of org.hl7.fhir.r4.model.Specimen in project org.hl7.fhir.core by hapifhir.

the class TurtleTests method test_conceptmap_example_specimen_type.

@Test
public void test_conceptmap_example_specimen_type() throws FileNotFoundException, IOException, Exception {
    System.out.println("conceptmap-example-specimen-type.ttl");
    new Turtle().parse(TextFile.fileToString("C:\\work\\org.hl7.fhir\\build\\publish\\conceptmap-example-specimen-type.ttl"));
}

Example 40 with Specimen

use of org.hl7.fhir.r4.model.Specimen in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeProcedureRequest.

protected void composeProcedureRequest(Complex parent, String parentType, String name, ProcedureRequest element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeDomainResource(t, "ProcedureRequest", name, element, index);
    for (int i = 0; i < element.getIdentifier().size(); i++) composeIdentifier(t, "ProcedureRequest", "identifier", element.getIdentifier().get(i), i);
    for (int i = 0; i < element.getDefinition().size(); i++) composeReference(t, "ProcedureRequest", "definition", element.getDefinition().get(i), i);
    for (int i = 0; i < element.getBasedOn().size(); i++) composeReference(t, "ProcedureRequest", "basedOn", element.getBasedOn().get(i), i);
    for (int i = 0; i < element.getReplaces().size(); i++) composeReference(t, "ProcedureRequest", "replaces", element.getReplaces().get(i), i);
    if (element.hasRequisition())
        composeIdentifier(t, "ProcedureRequest", "requisition", element.getRequisition(), -1);
    if (element.hasStatusElement())
        composeEnum(t, "ProcedureRequest", "status", element.getStatusElement(), -1);
    if (element.hasIntentElement())
        composeEnum(t, "ProcedureRequest", "intent", element.getIntentElement(), -1);
    if (element.hasPriorityElement())
        composeEnum(t, "ProcedureRequest", "priority", element.getPriorityElement(), -1);
    if (element.hasDoNotPerformElement())
        composeBoolean(t, "ProcedureRequest", "doNotPerform", element.getDoNotPerformElement(), -1);
    for (int i = 0; i < element.getCategory().size(); i++) composeCodeableConcept(t, "ProcedureRequest", "category", element.getCategory().get(i), i);
    if (element.hasCode())
        composeCodeableConcept(t, "ProcedureRequest", "code", element.getCode(), -1);
    if (element.hasSubject())
        composeReference(t, "ProcedureRequest", "subject", element.getSubject(), -1);
    if (element.hasContext())
        composeReference(t, "ProcedureRequest", "context", element.getContext(), -1);
    if (element.hasOccurrence())
        composeType(t, "ProcedureRequest", "occurrence", element.getOccurrence(), -1);
    if (element.hasAsNeeded())
        composeType(t, "ProcedureRequest", "asNeeded", element.getAsNeeded(), -1);
    if (element.hasAuthoredOnElement())
        composeDateTime(t, "ProcedureRequest", "authoredOn", element.getAuthoredOnElement(), -1);
    if (element.hasRequester())
        composeProcedureRequestProcedureRequestRequesterComponent(t, "ProcedureRequest", "requester", element.getRequester(), -1);
    if (element.hasPerformerType())
        composeCodeableConcept(t, "ProcedureRequest", "performerType", element.getPerformerType(), -1);
    if (element.hasPerformer())
        composeReference(t, "ProcedureRequest", "performer", element.getPerformer(), -1);
    for (int i = 0; i < element.getReasonCode().size(); i++) composeCodeableConcept(t, "ProcedureRequest", "reasonCode", element.getReasonCode().get(i), i);
    for (int i = 0; i < element.getReasonReference().size(); i++) composeReference(t, "ProcedureRequest", "reasonReference", element.getReasonReference().get(i), i);
    for (int i = 0; i < element.getSupportingInfo().size(); i++) composeReference(t, "ProcedureRequest", "supportingInfo", element.getSupportingInfo().get(i), i);
    for (int i = 0; i < element.getSpecimen().size(); i++) composeReference(t, "ProcedureRequest", "specimen", element.getSpecimen().get(i), i);
    for (int i = 0; i < element.getBodySite().size(); i++) composeCodeableConcept(t, "ProcedureRequest", "bodySite", element.getBodySite().get(i), i);
    for (int i = 0; i < element.getNote().size(); i++) composeAnnotation(t, "ProcedureRequest", "note", element.getNote().get(i), i);
    for (int i = 0; i < element.getRelevantHistory().size(); i++) composeReference(t, "ProcedureRequest", "relevantHistory", element.getRelevantHistory().get(i), i);
}