use of org.hl7.fhir.r4.model.UriType in project org.hl7.fhir.core by hapifhir.
the class R2ToR5Loader method loadBundle.
@Override
public Bundle loadBundle(InputStream stream, boolean isJson) throws FHIRException, IOException {
Resource r2 = null;
if (isJson)
r2 = new JsonParser().parse(stream);
else
r2 = new XmlParser().parse(stream);
org.hl7.fhir.r5.model.Resource r5 = VersionConvertorFactory_10_50.convertResource(r2, advisor);
Bundle b;
if (r5 instanceof Bundle) {
b = (Bundle) r5;
} else {
b = new Bundle();
b.setId(UUID.randomUUID().toString().toLowerCase());
b.setType(BundleType.COLLECTION);
b.addEntry().setResource(r5).setFullUrl(r5 instanceof CanonicalResource ? ((CanonicalResource) r5).getUrl() : null);
}
// Add any code systems defined as part of processing value sets to the end of the converted Bundle
for (CodeSystem cs : advisor.getCslist()) {
BundleEntryComponent be = b.addEntry();
be.setFullUrl(cs.getUrl());
be.setResource(cs);
}
advisor.getCslist().clear();
if (killPrimitives) {
List<BundleEntryComponent> remove = new ArrayList<BundleEntryComponent>();
for (BundleEntryComponent be : b.getEntry()) {
if (be.hasResource() && be.getResource() instanceof StructureDefinition) {
StructureDefinition sd = (StructureDefinition) be.getResource();
if (sd.getKind() == StructureDefinitionKind.PRIMITIVETYPE)
remove.add(be);
}
}
b.getEntry().removeAll(remove);
}
if (patchUrls) {
for (BundleEntryComponent be : b.getEntry()) {
if (be.hasResource() && be.getResource() instanceof StructureDefinition) {
StructureDefinition sd = (StructureDefinition) be.getResource();
sd.setUrl(sd.getUrl().replace(URL_BASE, URL_DSTU2));
sd.addExtension().setUrl(URL_ELEMENT_DEF_NAMESPACE).setValue(new UriType(URL_BASE));
}
}
}
return b;
}
use of org.hl7.fhir.r4.model.UriType in project org.hl7.fhir.core by hapifhir.
the class R3ToR5Loader method loadResource.
@Override
public org.hl7.fhir.r5.model.Resource loadResource(InputStream stream, boolean isJson) throws FHIRException, IOException {
Resource r3 = null;
if (isJson)
r3 = new JsonParser().parse(stream);
else
r3 = new XmlParser().parse(stream);
org.hl7.fhir.r5.model.Resource r5 = VersionConvertorFactory_30_50.convertResource(r3);
setPath(r5);
if (!advisor.getCslist().isEmpty()) {
throw new FHIRException("Error: Cannot have included code systems");
}
if (killPrimitives) {
throw new FHIRException("Cannot kill primitives when using deferred loading");
}
if (patchUrls) {
if (r5 instanceof StructureDefinition) {
StructureDefinition sd = (StructureDefinition) r5;
sd.setUrl(sd.getUrl().replace(URL_BASE, URL_R4));
sd.addExtension().setUrl(URL_ELEMENT_DEF_NAMESPACE).setValue(new UriType(URL_BASE));
for (ElementDefinition ed : sd.getSnapshot().getElement()) patchUrl(ed);
for (ElementDefinition ed : sd.getDifferential().getElement()) patchUrl(ed);
}
}
return r5;
}
use of org.hl7.fhir.r4.model.UriType in project org.hl7.fhir.core by hapifhir.
the class R3ToR5Loader method loadBundle.
@Override
public Bundle loadBundle(InputStream stream, boolean isJson) throws FHIRException, IOException {
Resource r3 = null;
if (isJson)
r3 = new JsonParser().parse(stream);
else
r3 = new XmlParser().parse(stream);
org.hl7.fhir.r5.model.Resource r5 = VersionConvertorFactory_30_50.convertResource(r3, advisor);
Bundle b;
if (r5 instanceof Bundle)
b = (Bundle) r5;
else {
b = new Bundle();
b.setId(UUID.randomUUID().toString().toLowerCase());
b.setType(BundleType.COLLECTION);
b.addEntry().setResource(r5).setFullUrl(r5 instanceof CanonicalResource ? ((CanonicalResource) r5).getUrl() : null);
}
for (CodeSystem cs : advisor.getCslist()) {
BundleEntryComponent be = b.addEntry();
be.setFullUrl(cs.getUrl());
be.setResource(cs);
}
if (killPrimitives) {
List<BundleEntryComponent> remove = new ArrayList<BundleEntryComponent>();
for (BundleEntryComponent be : b.getEntry()) {
if (be.hasResource() && be.getResource() instanceof StructureDefinition) {
StructureDefinition sd = (StructureDefinition) be.getResource();
if (sd.getKind() == StructureDefinitionKind.PRIMITIVETYPE)
remove.add(be);
}
}
b.getEntry().removeAll(remove);
}
if (patchUrls) {
for (BundleEntryComponent be : b.getEntry()) {
if (be.hasResource() && be.getResource() instanceof StructureDefinition) {
StructureDefinition sd = (StructureDefinition) be.getResource();
sd.setUrl(sd.getUrl().replace(URL_BASE, URL_DSTU3));
sd.addExtension().setUrl(URL_ELEMENT_DEF_NAMESPACE).setValue(new UriType(URL_BASE));
for (ElementDefinition ed : sd.getSnapshot().getElement()) patchUrl(ed);
for (ElementDefinition ed : sd.getDifferential().getElement()) patchUrl(ed);
}
}
}
return b;
}
use of org.hl7.fhir.r4.model.UriType in project org.hl7.fhir.core by hapifhir.
the class R2ToR3Loader method loadBundle.
@Override
public Bundle loadBundle(InputStream stream, boolean isJson) throws FHIRException, IOException {
Resource r2;
if (isJson)
r2 = new JsonParser().parse(stream);
else
r2 = new XmlParser().parse(stream);
org.hl7.fhir.dstu3.model.Resource r3 = VersionConvertorFactory_10_30.convertResource(r2, advisor_10_30);
Bundle b;
if (r3 instanceof Bundle) {
b = (Bundle) r3;
} else {
b = new Bundle();
b.setId(UUID.randomUUID().toString().toLowerCase());
b.setType(BundleType.COLLECTION);
b.addEntry().setResource(r3).setFullUrl(r3 instanceof MetadataResource ? ((MetadataResource) r3).getUrl() : null);
}
advisor_10_30.getCslist().forEach(cs -> {
BundleEntryComponent be = b.addEntry();
be.setFullUrl(cs.getUrl());
be.setResource(cs);
});
advisor_10_30.getCslist().clear();
if (killPrimitives) {
List<BundleEntryComponent> remove = new ArrayList<BundleEntryComponent>();
for (BundleEntryComponent be : b.getEntry()) {
if (be.hasResource() && be.getResource() instanceof StructureDefinition) {
StructureDefinition sd = (StructureDefinition) be.getResource();
if (sd.getKind() == StructureDefinitionKind.PRIMITIVETYPE)
remove.add(be);
}
}
b.getEntry().removeAll(remove);
}
if (patchUrls) {
b.getEntry().stream().filter(be -> be.hasResource() && be.getResource() instanceof StructureDefinition).map(be -> (StructureDefinition) be.getResource()).forEach(sd -> {
sd.setUrl(sd.getUrl().replace(URL_BASE, URL_DSTU2));
sd.addExtension().setUrl(URL_ELEMENT_DEF_NAMESPACE).setValue(new UriType(URL_BASE));
});
}
return b;
}
use of org.hl7.fhir.r4.model.UriType in project org.hl7.fhir.core by hapifhir.
the class JsonParser method composeType.
protected void composeType(String prefix, Type type) throws IOException {
if (type == null)
;
else if (type instanceof Age)
composeAge(prefix + "Age", (Age) type);
else if (type instanceof Count)
composeCount(prefix + "Count", (Count) type);
else if (type instanceof Money)
composeMoney(prefix + "Money", (Money) type);
else if (type instanceof Distance)
composeDistance(prefix + "Distance", (Distance) type);
else if (type instanceof Duration)
composeDuration(prefix + "Duration", (Duration) type);
else if (type instanceof SimpleQuantity)
composeSimpleQuantity(prefix + "SimpleQuantity", (SimpleQuantity) type);
else if (type instanceof Period)
composePeriod(prefix + "Period", (Period) type);
else if (type instanceof Coding)
composeCoding(prefix + "Coding", (Coding) type);
else if (type instanceof Range)
composeRange(prefix + "Range", (Range) type);
else if (type instanceof Quantity)
composeQuantity(prefix + "Quantity", (Quantity) type);
else if (type instanceof Attachment)
composeAttachment(prefix + "Attachment", (Attachment) type);
else if (type instanceof Ratio)
composeRatio(prefix + "Ratio", (Ratio) type);
else if (type instanceof Annotation)
composeAnnotation(prefix + "Annotation", (Annotation) type);
else if (type instanceof SampledData)
composeSampledData(prefix + "SampledData", (SampledData) type);
else if (type instanceof Reference)
composeReference(prefix + "Reference", (Reference) type);
else if (type instanceof CodeableConcept)
composeCodeableConcept(prefix + "CodeableConcept", (CodeableConcept) type);
else if (type instanceof Identifier)
composeIdentifier(prefix + "Identifier", (Identifier) type);
else if (type instanceof Signature)
composeSignature(prefix + "Signature", (Signature) type);
else if (type instanceof TriggerDefinition)
composeTriggerDefinition(prefix + "TriggerDefinition", (TriggerDefinition) type);
else if (type instanceof ElementDefinition)
composeElementDefinition(prefix + "ElementDefinition", (ElementDefinition) type);
else if (type instanceof Timing)
composeTiming(prefix + "Timing", (Timing) type);
else if (type instanceof ModuleMetadata)
composeModuleMetadata(prefix + "ModuleMetadata", (ModuleMetadata) type);
else if (type instanceof ActionDefinition)
composeActionDefinition(prefix + "ActionDefinition", (ActionDefinition) type);
else if (type instanceof Address)
composeAddress(prefix + "Address", (Address) type);
else if (type instanceof HumanName)
composeHumanName(prefix + "HumanName", (HumanName) type);
else if (type instanceof DataRequirement)
composeDataRequirement(prefix + "DataRequirement", (DataRequirement) type);
else if (type instanceof Meta)
composeMeta(prefix + "Meta", (Meta) type);
else if (type instanceof ParameterDefinition)
composeParameterDefinition(prefix + "ParameterDefinition", (ParameterDefinition) type);
else if (type instanceof ContactPoint)
composeContactPoint(prefix + "ContactPoint", (ContactPoint) type);
else if (type instanceof MarkdownType) {
composeMarkdownCore(prefix + "Markdown", (MarkdownType) type, false);
composeMarkdownExtras(prefix + "Markdown", (MarkdownType) type, false);
} else if (type instanceof UnsignedIntType) {
composeUnsignedIntCore(prefix + "UnsignedInt", (UnsignedIntType) type, false);
composeUnsignedIntExtras(prefix + "UnsignedInt", (UnsignedIntType) type, false);
} else if (type instanceof CodeType) {
composeCodeCore(prefix + "Code", (CodeType) type, false);
composeCodeExtras(prefix + "Code", (CodeType) type, false);
} else if (type instanceof IdType) {
composeIdCore(prefix + "Id", (IdType) type, false);
composeIdExtras(prefix + "Id", (IdType) type, false);
} else if (type instanceof OidType) {
composeOidCore(prefix + "Oid", (OidType) type, false);
composeOidExtras(prefix + "Oid", (OidType) type, false);
} else if (type instanceof PositiveIntType) {
composePositiveIntCore(prefix + "PositiveInt", (PositiveIntType) type, false);
composePositiveIntExtras(prefix + "PositiveInt", (PositiveIntType) type, false);
} else if (type instanceof UuidType) {
composeUuidCore(prefix + "Uuid", (UuidType) type, false);
composeUuidExtras(prefix + "Uuid", (UuidType) type, false);
} else if (type instanceof IntegerType) {
composeIntegerCore(prefix + "Integer", (IntegerType) type, false);
composeIntegerExtras(prefix + "Integer", (IntegerType) type, false);
} else if (type instanceof DateTimeType) {
composeDateTimeCore(prefix + "DateTime", (DateTimeType) type, false);
composeDateTimeExtras(prefix + "DateTime", (DateTimeType) type, false);
} else if (type instanceof DateType) {
composeDateCore(prefix + "Date", (DateType) type, false);
composeDateExtras(prefix + "Date", (DateType) type, false);
} else if (type instanceof DecimalType) {
composeDecimalCore(prefix + "Decimal", (DecimalType) type, false);
composeDecimalExtras(prefix + "Decimal", (DecimalType) type, false);
} else if (type instanceof UriType) {
composeUriCore(prefix + "Uri", (UriType) type, false);
composeUriExtras(prefix + "Uri", (UriType) type, false);
} else if (type instanceof Base64BinaryType) {
composeBase64BinaryCore(prefix + "Base64Binary", (Base64BinaryType) type, false);
composeBase64BinaryExtras(prefix + "Base64Binary", (Base64BinaryType) type, false);
} else if (type instanceof TimeType) {
composeTimeCore(prefix + "Time", (TimeType) type, false);
composeTimeExtras(prefix + "Time", (TimeType) type, false);
} else if (type instanceof StringType) {
composeStringCore(prefix + "String", (StringType) type, false);
composeStringExtras(prefix + "String", (StringType) type, false);
} else if (type instanceof BooleanType) {
composeBooleanCore(prefix + "Boolean", (BooleanType) type, false);
composeBooleanExtras(prefix + "Boolean", (BooleanType) type, false);
} else if (type instanceof InstantType) {
composeInstantCore(prefix + "Instant", (InstantType) type, false);
composeInstantExtras(prefix + "Instant", (InstantType) type, false);
} else
throw new Error("Unhandled type");
}
Aggregations