Examples with MR org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR used on opensource projects

Example 86 with MR

use of org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR in project hl7v2-fhir-converter by LinuxForHealth.

the class HL7OMLMessageTest method testOMLO21WithPatientWithPatientVisitAndMinimumOrder.

@Test
public void testOMLO21WithPatientWithPatientVisitAndMinimumOrder() throws IOException {
    String hl7message = "MSH|^~\\&||Test System|||20210917110100||OML^O21^OML_O21|||2.6\r" + "PID|1||7659afb9-0dfc-d744-1f40-5b9314807108^^^^MR||Feeney^Sam^^^^^L|||M||||||||\r" + "PV1|1|O|||||||||||||||||2462201|||||||||||||||||||||||||20180520230000\r" + "ORC|NW|8125550e-04db-11ec-a9a8-086d41d421ca^^ID^UUID||||||||||\r";
    String json = ftv.convert(hl7message, OPTIONS_PRETTYPRINT);
    assertThat(json).isNotBlank();
    IBaseResource bundleResource = context.getParser().parseResource(json);
    assertThat(bundleResource).isNotNull();
    Bundle b = (Bundle) bundleResource;
    List<BundleEntryComponent> e = b.getEntry();
    List<Resource> patientResource = ResourceUtils.getResourceList(e, ResourceType.Patient);
    // from PID
    assertThat(patientResource).hasSize(1);
    List<Resource> encounterResource = ResourceUtils.getResourceList(e, ResourceType.Encounter);
    // from PV1
    assertThat(encounterResource).hasSize(1);
    // TODO: When function is added to create ServiceRequest from ORC then also check for ServiceRequest
    // List<Resource> serviceResource = e.stream()
    // .filter(v -> ResourceType.ServiceRequest == v.getResource().getResourceType())
    // .map(BundleEntryComponent::getResource).collect(Collectors.toList());
    // assertThat(serviceResource).hasSize(1);
    // Confirm that there are no extra resources
    // TODO: When ServiceRequest is added then this line should check for 3.
    assertThat(e.size()).isEqualTo(2);
}

Example 87 with MR

use of org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR in project hl7v2-fhir-converter by LinuxForHealth.

the class HL7OMLMessageTest method testOMLO21WithPatientAndOrderWithObservationRequestWithDG1.

@Test
public void testOMLO21WithPatientAndOrderWithObservationRequestWithDG1() throws IOException {
    String hl7message = "MSH|^~\\&||Test System|||20210917110100||OML^O21^OML_O21|||2.6\r" + "PID|1||7659afb9-0dfc-d744-1f40-5b9314807108^^^^MR||Feeney^Sam^^^^^L|||M||||||||\r" + "ORC|NW|8125550e-04db-11ec-a9a8-086d41d421ca^^ID^UUID||||||||||\r" + "OBR|1|8125550e-04db-11ec-a9a8-086d41d421ca^^ID^UUID||58410-2^CBC panel - Blood by Automated count^LN||||||||||||\r" + "DG1|1||A013^Paratyphoid fever C^I10C|||A|||||||||1\r";
    String json = ftv.convert(hl7message, OPTIONS_PRETTYPRINT);
    assertThat(json).isNotBlank();
    IBaseResource bundleResource = context.getParser().parseResource(json);
    assertThat(bundleResource).isNotNull();
    Bundle b = (Bundle) bundleResource;
    List<BundleEntryComponent> e = b.getEntry();
    List<Resource> patientResource = ResourceUtils.getResourceList(e, ResourceType.Patient);
    // from PID
    assertThat(patientResource).hasSize(1);
    List<Resource> serviceResource = ResourceUtils.getResourceList(e, ResourceType.ServiceRequest);
    // from ORC
    assertThat(serviceResource).hasSize(1);
    List<Resource> diagnosticresource = ResourceUtils.getResourceList(e, ResourceType.DiagnosticReport);
    // from OBR
    assertThat(diagnosticresource).hasSize(1);
    List<Resource> conditionresource = ResourceUtils.getResourceList(e, ResourceType.Condition);
    // from DG1
    assertThat(conditionresource).hasSize(1);
    DiagnosticReport diag = ResourceUtils.getResourceDiagnosticReport(diagnosticresource.get(0), context);
    Reference patRef = diag.getSubject();
    assertThat(patRef.isEmpty()).isFalse();
    ServiceRequest request = ResourceUtils.getResourceServiceRequest(serviceResource.get(0), context);
    Reference patientRef = request.getSubject();
    assertThat(patientRef.isEmpty()).isFalse();
    // Confirm that there are no extra resources
    assertThat(e.size()).isEqualTo(4);
}

Example 88 with MR

use of org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR in project hl7v2-fhir-converter by LinuxForHealth.

the class HL7OMLMessageTest method testOMLO21MultipleOrdersWithoutObservations.

@Test
@Disabled
public // Note that even though the HL7 message definition does not require PID, it is necessary so that the resulting FHIR ServiceRequests pass FHIR validation.
void testOMLO21MultipleOrdersWithoutObservations() throws IOException {
    String hl7message = "MSH|^~\\&||Test System|||20210917110100||OML^O21^OML_O21|||2.6\r" + "PID|1||7659afb9-0dfc-d744-1f40-5b9314807108^^^^MR||Feeney^Sam^^^^^L|||M||||||||\r" + "ORC|NW|8125550e-04db-11ec-a9a8-086d41d421ca^^ID^UUID||||||||||\r" + "ORC|NW|8125550e-04db-11ec-a9a8-086d41d421ca^^ID^UUID||||||||||\r";
    String json = ftv.convert(hl7message, OPTIONS_PRETTYPRINT);
    assertThat(json).isNotBlank();
    IBaseResource bundleResource = context.getParser().parseResource(json);
    assertThat(bundleResource).isNotNull();
    Bundle b = (Bundle) bundleResource;
    assertThat(b.getType()).isEqualTo(BundleType.COLLECTION);
    List<BundleEntryComponent> e = b.getEntry();
    List<Resource> patientResource = ResourceUtils.getResourceList(e, ResourceType.Patient);
    // from PID
    assertThat(patientResource).hasSize(1);
    List<Resource> serviceResource = ResourceUtils.getResourceList(e, ResourceType.ServiceRequest);
    // from ORC
    assertThat(serviceResource).hasSize(2);
    // Confirm that there are no extra resources
    assertThat(e.size()).isEqualTo(3);
}

Example 89 with MR

use of org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7DFTMessageTest method testResourceCreationFromDFT.

@Test
void testResourceCreationFromDFT() throws IOException {
    // Tests structure of DFT_P03 message type and DFT messages in general
    // DFT_P03 message types and IN1 are tested in detail in Hl7FinancialInsuranceTest
    String hl7message = "MSH|^~\\&|||||20151008111200||DFT^P03^DFT_P03|MSGID000001|T|2.6|||||||||\n" + "EVN||20210407191342||||||\n" + "PID|||MR1^^^XYZ^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + "PV1||I||||||||||||||||||||||||||||||||||||||||||\n" + // Minimal ORC for ServiceRequest
    "ORC|NW|||||||||||||||\n" + // Minimal OBR for ServiceRequest
    "OBR|1||||||||||||||||||||||||||||||||\n" + "NTE|1|O|TEST ORC/OBR NOTE AA|||\n" + // OBX is type ST so an observation will be created
    "OBX|1|ST|100||This is content|||||||X\n" + "NTE|1|L|TEST OBXa NOTE|\n" + // FT1.7 is required transaction code (currently not used)
    "FT1||||20201231145045||CG|FAKE|||||||||||||||||||||||||||||||||||||\n" + // IN1.2.4, IN1.2.6 to Identifier 2
    "IN1|1|Value1^^System3^Value4^^System6" + // IN1.5 to 15 NOT REFERENCED (See test testBasicInsuranceCoverageFields)
    "|IdValue1^^^IdSystem4^^^^|Large Blue Organization|||||||||||" + // IN1.18 through IN1.35 NOT REFERENCED
    "|DoeFake^Judy^^^Rev.|PAR||||||||||||||||||" + // IN1.50 through IN1.53 NOT REFERENCED
    "|MEMBER36||||||||||Value46|||J494949||||\n";
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    List<Resource> encounters = ResourceUtils.getResourceList(e, ResourceType.Encounter);
    // From PV1
    assertThat(encounters).hasSize(1);
    List<Resource> patients = ResourceUtils.getResourceList(e, ResourceType.Patient);
    // From PID
    assertThat(patients).hasSize(1);
    List<Resource> organizations = ResourceUtils.getResourceList(e, ResourceType.Organization);
    // From Payor created by IN1
    assertThat(organizations).hasSize(1);
    List<Resource> coverages = ResourceUtils.getResourceList(e, ResourceType.Coverage);
    // From IN1 segment
    assertThat(coverages).hasSize(1);
    List<Resource> relatedPersons = ResourceUtils.getResourceList(e, ResourceType.RelatedPerson);
    // From IN1.16 through IN1.19; IN1.43; INI.49
    assertThat(relatedPersons).hasSize(1);
    List<Resource> serviceRequests = ResourceUtils.getResourceList(e, ResourceType.ServiceRequest);
    // From ORC / OBR
    assertThat(serviceRequests).hasSize(1);
    ServiceRequest serviceRequest = ResourceUtils.getResourceServiceRequest(serviceRequests.get(0), ResourceUtils.context);
    assertThat(serviceRequest.getNote()).hasSize(1);
    assertThat(serviceRequest.getNote().get(0).getTextElement().getValueAsString()).isEqualTo("TEST ORC/OBR NOTE AA");
    List<Resource> observations = ResourceUtils.getResourceList(e, ResourceType.Observation);
    // From OBX
    assertThat(observations).hasSize(1);
    Observation observation = ResourceUtils.getResourceObservation(observations.get(0), ResourceUtils.context);
    assertThat(observation.getNote()).hasSize(1);
    assertThat(observation.getNote().get(0).getTextElement().getValueAsString()).isEqualTo("TEST OBXa NOTE");
    // Confirm there are no unaccounted for resources
    // Expected: Coverage, Organization, Patient, Encounter, RelatedPerson, ServiceRequest, Observation
    assertThat(e).hasSize(7);
}

Example 90 with MR

use of org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR in project hl7v2-fhir-converter by LinuxForHealth.

the class InputTimeZoneIdTest method testEncounterLengthWithZoneIdContext.

@Test
void testEncounterLengthWithZoneIdContext() {
    // This is the same as the test for PV1.44 and PV1.45 in Hl7EncounterFHIRConversionTest.testEncounterLength, but
    // here we pass in ZoneIdText context to ensure that Hl7RelatedGeneralUtils.pv1DurationLength works correctly with an input ZoneId.
    // Both start PV1.44 and end PV1.45 must be present to use either value as part of length
    // When both are present, the calculation value is provided in "Minutes"
    String hl7message = "MSH|^~\\&|PROSOLV||||20151008111200||ADT^A01^ADT_A01|MSGID000001|T|2.6|||||||||\n" + "EVN|A04|20151008111200|||||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + // PV1.44 present; PV1.45 present
    "PV1|1|E||||||||||||||||||||||||||||||||||||||||||20161013154626|20161014154634|||||||\n";
    // Test with city based ZoneId passed through options
    ConverterOptions customOptionsWithTenant = new Builder().withValidateResource().withPrettyPrint().withZoneIdText("Europe/Paris").build();
    // "Europe/Paris" will become -01:00, but it we don't see because it is internal and relative to other date.
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message, customOptionsWithTenant);
    // Find the encounter from the FHIR bundle.
    List<Resource> encounters = ResourceUtils.getResourceList(e, ResourceType.Encounter);
    assertThat(encounters).hasSize(1);
    Encounter encounter = (Encounter) encounters.get(0);
    assertThat(encounter.hasLength()).isTrue();
    Duration encounterLength = encounter.getLength();
    assertThat(encounterLength.getValue()).isEqualTo((BigDecimal.valueOf(1440)));
    assertThat(encounterLength.getUnit()).isEqualTo("minutes");
    assertThat(encounterLength.getCode()).isEqualTo("min");
    assertThat(encounterLength.getSystem()).isEqualTo("http://unitsofmeasure.org");
}