Examples with MR org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR used on opensource projects

Example 66 with MR

use of org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7ImmunizationFHIRConversionTest method testImmunizationAdministrationPlaceOrg1.

@Test
// Test priority of Immunization Performer sourcing is tested.
void testImmunizationAdministrationPlaceOrg1() throws IOException {
    String hl7VUXmessageRep = "MSH|^~\\&|||||20140701041038||VXU^V04^VXU_V04|MSG.Valid_01|P|2.6|||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\r" + // PV1.3.4 to Organization referenced by Encounter.serviceProvider; but bypassed for Immunization.performer because RXA.27.4 has priority
    "PV1||O|^^^PlacePV1.3.4\r" + "ORC|||197027|||||||^Clerk^Myron|||||||RI2050\r" + // RXA.12 - RXA.26 not used
    "RXA|0|1|20130531||48^HIB PRP-T^CVX||||||^^^PlaceRXA11|||||||||||||||" + // RXA.27 to Immunization Performer
    "|^^^PlaceRXA274\r" + "OBX|1|CE|59784-9^Disease with presumed immunity^LN||\r";
    List<Bundle.BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7VUXmessageRep);
    // We expect two different organizations, one for Encounter.serviceProvider, one for Immunization.performer
    List<Resource> organizations = ResourceUtils.getResourceList(e, ResourceType.Organization);
    assertThat(organizations).hasSize(2);
    Organization org1 = (Organization) organizations.get(0);
    Organization org2 = (Organization) organizations.get(1);
    // RXA.27.4
    String orgId1 = org1.getId();
    // RXA.27.4
    assertThat(orgId1).isEqualTo("Organization/placerxa274");
    // PV1.3.4
    String orgId2 = org2.getId();
    // PV1.3.4
    assertThat(orgId2).isEqualTo("Organization/placepv1.3.4");
    List<Resource> immunizations = ResourceUtils.getResourceList(e, ResourceType.Immunization);
    assertThat(immunizations).hasSize(1);
    Immunization imm = (Immunization) immunizations.get(0);
    // RXA.27.4
    assertThat(imm.getPerformer()).hasSize(1);
    // RXA.27
    assertThat(imm.getPerformerFirstRep().getActor().getReference()).isEqualTo(orgId1);
    List<Resource> encounters = ResourceUtils.getResourceList(e, ResourceType.Encounter);
    assertThat(encounters).hasSize(1);
    Encounter enc = (Encounter) encounters.get(0);
    // PV1.3.4
    assertThat(enc.getServiceProvider().getReference()).isEqualTo(orgId2);
    // Check for expected resources: Organizations (2), Immunization, Encounter, Patient
    assertThat(e).hasSize(5);
}

Example 67 with MR

use of org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7ImmunizationFHIRConversionTest method testImmunizationOBX3is309567.

@Test
void testImmunizationOBX3is309567() throws IOException {
    // When OBX.3 is 30956-7 and RXA.5 is not provided we get a vaccine code from OBX.5
    String hl7VUXmessageRep = "MSH|^~\\&|EHR|12345^SiteName|MIIS|99990|20140701041038||VXU^V04^VXU_V04|MSG.Valid_01|P|2.6|||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\r" + "ORC|||197027|||||||^Clerk^Myron|||||||RI2050\r" + "RXA|0|1|20130531\r" + "OBX|1|CWE|30956-7^vaccine type^LN|1|107^DTAP^CVX\r";
    Immunization immunization = ResourceUtils.getImmunization(ftv, hl7VUXmessageRep);
    // Status defaults to completed
    assertThat(immunization.getStatus().getDisplay()).isEqualTo("completed");
    assertThat(immunization.hasStatusReason()).isFalse();
    assertThat(immunization.hasReaction()).isFalse();
    assertThat(immunization.hasProgramEligibility()).isFalse();
    assertThat(immunization.hasFundingSource()).isFalse();
    // When OBX.3 is 30956-7 we get a vaccine code
    assertThat(immunization.hasVaccineCode()).isTrue();
    assertThat(immunization.getVaccineCode().getCodingFirstRep().getCode()).isEqualTo("107");
    assertThat(immunization.getVaccineCode().getCodingFirstRep().getDisplay()).isEqualTo("DTAP");
    assertThat(immunization.getVaccineCode().getCodingFirstRep().getSystem()).isEqualTo("http://hl7.org/fhir/sid/cvx");
    assertThat(immunization.getVaccineCode().getText()).isEqualTo("DTAP");
}

Example 68 with MR

use of org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7ImmunizationFHIRConversionTest method testImmunizationReasonImmune2.

@Test
void testImmunizationReasonImmune2() throws IOException {
    // Status reason is IMMUNE when OBX.3 is 59784-9, RXA.18 not provided, and RXA.20 is not RE
    String hl7VUXmessageRep = "MSH|^~\\&|EHR|12345^SiteName|MIIS|99990|20140701041038||VXU^V04^VXU_V04|MSG.Valid_01|P|2.6|||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\r" + "ORC|||197027|||||||^Clerk^Myron|||||||RI2050\r" + // RXA.20 is not RE, so OBX.3==59784-9 is activated; yeilds status not-done
    "RXA|0|1|20130531||48^HIB PRP-T^CVX|||||||||||||||NA\r" + "OBX|1|CE|59784-9^Disease with presumed immunity^LN|1|V02^VFC eligible Medicaid/MedicaidManaged Care^HL70064\r";
    Immunization immunization = ResourceUtils.getImmunization(ftv, hl7VUXmessageRep);
    // RXA.20
    assertThat(immunization.getStatus().getDisplay()).isEqualTo("not-done");
    assertThat(immunization.hasStatusReason()).isTrue();
    assertThat(immunization.getStatusReason().getCoding()).hasSize(2);
    // From OBX.3==59784-9
    assertThat(immunization.getStatusReason().getCoding().get(0).getCode()).isEqualTo("IMMUNE");
    assertThat(immunization.getStatusReason().getCoding().get(0).getSystem()).isEqualTo("http://terminology.hl7.org/CodeSystem/v3-ActReason");
    assertThat(immunization.getStatusReason().getCoding().get(0).getDisplay()).isEqualTo("immunity");
    assertThat(immunization.getStatusReason().getCoding().get(1).getCode()).isEqualTo("59784-9");
    assertThat(immunization.getStatusReason().getCoding().get(1).getSystem()).isEqualTo("http://loinc.org");
    assertThat(immunization.getStatusReason().getCoding().get(1).getDisplay()).isEqualTo("Disease with presumed immunity");
    assertThat(immunization.getStatusReason().getText()).isEqualTo("Disease with presumed immunity");
}

Example 69 with MR

use of org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7ImmunizationFHIRConversionTest method testImmunizationStatusReasonMEDPREC2.

@Test
void testImmunizationStatusReasonMEDPREC2() throws IOException {
    // Status reason is MEDPREC when OBX.3 is 30945-0, RXA.18 empty, and RXA.20 not RE
    String hl7VUXmessageRep = "MSH|^~\\&|MYEHR2.5|RI88140101|KIDSNET_IFL|RIHEALTH|20130531||VXU^V04^VXU_V04|20130531RI881401010105|P|2.5.1|||NE|AL||||||RI543763\r" + "PID|1||12345^^^^MR||TestPatient^Jane^^^^^L||||||\r" + "ORC|||197027|||||||^Clerk^Myron|||||||RI2050\r" + // RXA.20 is not RE, so OBX.3==30945-0 is activated; yeilds status not-done and MEDPREC statusReason
    "RXA|0|1|20130531||48^HIB PRP-T^CVX|||||||||||||||NA\r" + "OBX|1|CE|30945-0^contraindication^LN|1|V02^VFC eligible Medicaid/MedicaidManaged Care^HL70064||||||F||||||\r";
    Immunization immunization = ResourceUtils.getImmunization(ftv, hl7VUXmessageRep);
    // RXA-20
    assertThat(immunization.getStatus().getDisplay()).isEqualTo("not-done");
    assertThat(immunization.hasStatusReason()).isTrue();
    assertThat(immunization.getStatusReason().getCoding()).hasSize(2);
    assertThat(immunization.getStatusReason().getCoding().get(0).getCode()).isEqualTo("MEDPREC");
    assertThat(immunization.getStatusReason().getCoding().get(0).getSystem()).isEqualTo("http://terminology.hl7.org/CodeSystem/v3-ActReason");
    assertThat(immunization.getStatusReason().getCoding().get(0).getDisplay()).isEqualTo("medical precaution");
    assertThat(immunization.getStatusReason().getCoding().get(1).getCode()).isEqualTo("30945-0");
    assertThat(immunization.getStatusReason().getCoding().get(1).getSystem()).isEqualTo("http://loinc.org");
    assertThat(immunization.getStatusReason().getCoding().get(1).getDisplay()).isEqualTo("contraindication");
    assertThat(immunization.getStatusReason().getText()).isEqualTo("contraindication");
}

Example 70 with MR

use of org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7OrderRequestFHIRConversionTest method testMDMT02ServiceRequest.

// This test assures the MDM_T02 is properly enabled.
// It focuses on _differences_ in MDM not tested above, then does general confirmation of other fields
@Test
void testMDMT02ServiceRequest() {
    String hl7message = "MSH|^~\\&|Epic|PQA|WHIA|IBM|20170920141233||MDM^T02^MDM_T02|M1005|D|2.6\r" + "EVN|T02|20170920141233|||\r" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\r" + "PV1|1|I|||||||||||||||||||||||||||||||||||||\r" + // ORC.15 is occurenceDateTime
    "ORC|NW|P1005|F1005|P1005|SC|D|1||20170920141233|||1212^docProvider^docOrdering|||20170920141233|\r" + // OBR.31 used for reason code
    "OBR|1|P1005|F1005|71260^CT Chest without contrast^ICD10|||||||||||||||||||||||||||exam reason ID^PREAURICULAR EDEMA text||||\r";
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    List<Resource> serviceRequestList = ResourceUtils.getResourceList(e, ResourceType.ServiceRequest);
    assertThat(serviceRequestList).hasSize(1);
    ServiceRequest serviceRequest = ResourceUtils.getResourceServiceRequest(serviceRequestList.get(0), context);
    // Expect 3 identifiers (VN, PLAC, FILL)
    assertThat(serviceRequest.hasIdentifier()).isTrue();
    assertThat(serviceRequest.getIdentifier()).hasSize(3);
    // ORC.12 should create an ServiceRequest.requester reference
    assertThat(serviceRequest.hasRequester()).isTrue();
    assertThat(serviceRequest.getRequester().hasDisplay()).isTrue();
    assertThat(serviceRequest.getRequester().getDisplay()).isEqualTo("docOrdering docProvider");
    assertThat(serviceRequest.getRequester().hasReference()).isTrue();
    String requesterRef = serviceRequest.getRequester().getReference();
    Practitioner pract = ResourceUtils.getSpecificPractitionerFromBundleEntriesList(e, requesterRef);
    // Confirm that the matching practitioner by ID has the correct content (simple validation)
    // Should be ORC.12.1
    assertThat(pract.getIdentifierFirstRep().getValue()).isEqualTo("1212");
    // OBR.31 is the reason code
    assertThat(serviceRequest.hasReasonCode()).isTrue();
    assertThat(serviceRequest.getReasonCode()).hasSize(1);
    DatatypeUtils.checkCommonCodeableConceptAssertions(serviceRequest.getReasonCodeFirstRep(), "exam reason ID", "PREAURICULAR EDEMA text", null, "PREAURICULAR EDEMA text");
    // OBR.4 is the  code
    assertThat(serviceRequest.hasCode()).isTrue();
    DatatypeUtils.checkCommonCodeableConceptAssertions(serviceRequest.getCode(), "71260", "CT Chest without contrast", "http://hl7.org/fhir/sid/icd-10-cm", "CT Chest without contrast");
    // General over valdation of presence of fields:
    // ORC.5
    assertThat(serviceRequest.hasStatus()).isTrue();
    assertThat(serviceRequest.hasIntent()).isTrue();
    assertThat(serviceRequest.hasSubject()).isTrue();
    // ORC.9
    assertThat(serviceRequest.hasAuthoredOn()).isTrue();
}