Examples with MR org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR used on opensource projects

Example 56 with MR

use of org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7MedicationRequestFHIRConversionTest method testMedicationRequestCategoryRequesterAndDispenseRequest.

@Test
void testMedicationRequestCategoryRequesterAndDispenseRequest() {
    String hl7message = "MSH|^~\\&||||||S1|RDE^O11||T|2.6|||||||||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + // ORC.29 to category
    "ORC|NW|||||||||||3122^PROVIDER^ORDERING^^^DR|||20190606193536||||||||||||||I\n" + // RXE.13 empty so ORC.12 takes priority
    "RXE|^Q24H&0600^^20210330144208^^ROU|DUONEB3INH^3 ML PLAS CONT : IPRATROPIUM-ALBUTEROL 0.5-2.5 (3) MG/3ML IN SOLN^ADS|3||mL|47||||||||||||||||||||||||||||||||||\n";
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    List<Resource> medicationRequestList = ResourceUtils.getResourceList(e, ResourceType.MedicationRequest);
    assertThat(medicationRequestList).hasSize(1);
    MedicationRequest medicationRequest = ResourceUtils.getResourceMedicationRequest(medicationRequestList.get(0), ResourceUtils.context);
    // requester comes from ORC.12 which is the back up value for RXE.13
    String requesterRef = medicationRequest.getRequester().getReference();
    Practitioner practBundle = ResourceUtils.getSpecificPractitionerFromBundleEntriesList(e, requesterRef);
    Identifier practitionerIdentifier = practBundle.getIdentifierFirstRep();
    HumanName practName = practBundle.getNameFirstRep();
    // ORC.12.1
    assertThat(practitionerIdentifier.getValue()).isEqualTo("3122");
    // ORC.12.9
    assertThat(practitionerIdentifier.getSystem()).isNull();
    // ORC.12.2
    assertThat(practName.getFamily()).isEqualTo("PROVIDER");
    // ORC.12.3
    assertThat(practName.getGivenAsSingleString()).isEqualTo("ORDERING");
    // ORC.12.6
    assertThat(practName.getPrefixAsSingleString()).isEqualTo("DR");
    // ORC.12.5
    assertThat(practName.getSuffix()).isEmpty();
    // ORC.12
    assertThat(practName.getText()).isEqualTo("DR ORDERING PROVIDER");
    // category comes from  ORC.29
    assertThat(medicationRequest.getCategory()).hasSize(1);
    DatatypeUtils.checkCommonCodeableConceptAssertions(medicationRequest.getCategory().get(0), "inpatient", "Inpatient", "http://terminology.hl7.org/CodeSystem/medicationrequest-category", null);
    // DispenseRequest.start comes from ORC.15
    assertThat(medicationRequest.getDispenseRequest().hasValidityPeriod()).isTrue();
    assertThat(medicationRequest.getDispenseRequest().getValidityPeriod().getStartElement().toString()).containsPattern("2019-06-06");
}

Example 57 with MR

use of org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7MedicationRequestFHIRConversionTest method dosageInstructionTestRateRatioRXE.

@Test
void dosageInstructionTestRateRatioRXE() {
    // Test dosageInstruction.RateRatio from RXE.22,23,24
    String hl7message = "MSH|^~\\&||||||S1|RDE^O11||T|2.6|||||||||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + "ORC|NW|||||E|||||||||||||||||||||||I\n" + "RXE||DUONEB3INH^3 ML PLAS CONT : IPRATROPIUM-ALBUTEROL 0.5-2.5 (3) MG/3ML IN SOLN^ADS|||||||||||||||||||" + // RXE.24.3 empty to cause default in dosageInstruction.doseAndRate.rateRatio.numerator.system
    "|PC|7|PC||||||||||||||||\n";
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    List<Resource> medicationRequestList = ResourceUtils.getResourceList(e, ResourceType.MedicationRequest);
    // Confirm that one medicationRequest was created.
    assertThat(medicationRequestList).hasSize(1);
    MedicationRequest medicationRequest = ResourceUtils.getResourceMedicationRequest(medicationRequestList.get(0), ResourceUtils.context);
    Ratio rateRatio = medicationRequest.getDosageInstructionFirstRep().getDoseAndRateFirstRep().getRateRatio();
    // dosageInstruction.doseAndRate.rateRatio.numerator(RXE.23)
    // RXE.23
    assertThat(rateRatio.getNumerator().getValue()).hasToString("7.0");
    // RXE.24
    assertThat(rateRatio.getNumerator().getUnit()).isEqualTo("PC");
    // Defaulted
    assertThat(rateRatio.getNumerator().getSystem()).isEqualTo("http://unitsofmeasure.org");
    // dosageInstruction.doseAndRate.rateRatio.denominator
    assertThat(rateRatio.getDenominator().getValue()).hasToString("1.0");
    // RXE.22
    assertThat(rateRatio.getDenominator().getUnit()).isEqualTo("PC");
    assertThat(rateRatio.getDenominator().getSystem()).isEqualTo("http://unitsofmeasure.org");
    // Verify no extraneous resources
    // Expect MedicationRequest, Patient
    assertThat(e).hasSize(2);
}

Example 58 with MR

use of org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7MedicationRequestFHIRConversionTest method dispenseRequestTestRXE.

@Test
void dispenseRequestTestRXE() {
    // Get DispenseRequest from RXE segment (RXE.10, RXE.11.1 and RXE.11.3)
    String hl7message = "MSH|^~\\&||||||S1|RDE^O11||T|2.6|||||||||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + "ORC|NW||||||||||||||||||||||||||||\n" + "RXE||DUONEB3INH^3 ML PLAS CONT : IPRATROPIUM-ALBUTEROL 0.5-2.5 (3) MG/3ML IN SOLN^ADS|||||||" + // RXE.39 to dispenseRequest.InitialFill.Quantity
    "|1|PC^^measureofunits|0|||||||||||||||||||||||||||7|\n";
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    List<Resource> medicationRequestList = ResourceUtils.getResourceList(e, ResourceType.MedicationRequest);
    // Confirm that one medicationRequest was created.
    assertThat(medicationRequestList).hasSize(1);
    MedicationRequest medicationRequest = ResourceUtils.getResourceMedicationRequest(medicationRequestList.get(0), ResourceUtils.context);
    MedicationRequest.MedicationRequestDispenseRequestComponent disReq = medicationRequest.getDispenseRequest();
    // dispenseRequest.Quantity comes from RXE.10, RXE.11.1 and RXE.11.3
    assertThat(disReq.getQuantity().getValue()).hasToString("1.0");
    assertThat(disReq.getQuantity().getUnit()).isEqualTo("PC");
    assertThat(disReq.getQuantity().getSystem()).isEqualTo("urn:id:measureofunits");
    // dispenseRequest.NumberOfRepeatsAllowed RXE.12
    assertThat(disReq.getNumberOfRepeatsAllowed()).hasToString("0");
    // dispenseRequest.InitialFill.Quantity comes from RXE.39
    assertThat(disReq.getInitialFill().getQuantity().getValue()).hasToString("7.0");
    // Verify no extraneous resources
    // Expect MedicationRequest, Patient
    assertThat(e).hasSize(2);
}

Example 59 with MR

use of org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7MedicationRequestFHIRConversionTest method testMedicationRequestReasonCode.

@Test
void testMedicationRequestReasonCode() {
    // Reason code from RXO.20, should ignore ORC.16
    String hl7message = "MSH|^~\\&||||||S1|PPR^PC1||T|2.6|||||||||\r" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\r" + "PV1||I||||||||||||||||||||||||||||||||||||||||||\r" + "PRB|AD|20141015103243|15777000^Prediabetes (disorder)^SNM|654321^^OtherSoftware.ProblemOID|||||\r" + // ORC.16 purposely present to be ignored because RXO.20 is present
    "ORC|NW|||||||||||||||4338008^Wheezing^PRN\r" + "OBR|1|||555|||20170825010500||||||||||||||||||F\r" + // RXO.2 through RXO.35 otherwise purposely empty
    "RXO|65862-063-01^METOPROLOL TARTRATE^NDC|||||||||||||||||||134006\r";
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    List<Resource> medicationRequestList = ResourceUtils.getResourceList(e, ResourceType.MedicationRequest);
    assertThat(medicationRequestList).hasSize(1);
    MedicationRequest medicationRequest = ResourceUtils.getResourceMedicationRequest(medicationRequestList.get(0), ResourceUtils.context);
    assertThat(medicationRequest.getReasonCode()).hasSize(1);
    assertThat(medicationRequest.getReasonCodeFirstRep().getCoding()).hasSize(1);
    // RXO.20.1
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getCode()).isEqualTo("134006");
    // No RXO.20.2
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getDisplay()).isNull();
    // No RXO.20.3
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getSystem()).isNull();
    // Reason code from RXE.27. Ignores ORC.16.
    hl7message = "MSH|^~\\&||||||S1|RDE^O11||T|2.6|||||||||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + // ORC.16 purposely present to be ignored because RXE.27 is present
    "ORC|NW|||||||||||||||4338008^Wheezing^PRN\n" + // RXE.6 through RXE.44 otherwise purposely empty
    "RXE|^Q24H&0600^^20210330144208^^ROU|DUONEB3INH^3 ML PLAS CONT : IPRATROPIUM-ALBUTEROL 0.5-2.5 (3) MG/3ML IN SOLN^ADS|3||mL||||||||||||||||||||||Wheezing^Wheezing^PRN|||||||||||||\r";
    e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    medicationRequestList = ResourceUtils.getResourceList(e, ResourceType.MedicationRequest);
    assertThat(medicationRequestList).hasSize(1);
    medicationRequest = ResourceUtils.getResourceMedicationRequest(medicationRequestList.get(0), ResourceUtils.context);
    assertThat(medicationRequest.getReasonCode()).hasSize(1);
    assertThat(medicationRequest.getReasonCodeFirstRep().getCoding()).hasSize(1);
    // RXE.27
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getCode()).isEqualTo("Wheezing");
    // RXE.27
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getDisplay()).isEqualTo("Wheezing");
    // RXE.27
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getSystem()).isEqualTo("urn:id:PRN");
    // Reason code from ORC.16 (when RXE.27 is not present)
    hl7message = "MSH|^~\\&||||||S1|RDE^O11||T|2.6|||||||||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + // ORC.16 to reason code
    "ORC|NW|||||||||||||||4338008^Wheezing^PRN\n" + // RXE.6 through RXE.44 purposely empty
    "RXE|^Q24H&0600^^20210330144208^^ROU|DUONEB3INH^3 ML PLAS CONT : IPRATROPIUM-ALBUTEROL 0.5-2.5 (3) MG/3ML IN SOLN^ADS|3||mL|||||||||||||||||||||||||||||||||||\n";
    e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    medicationRequestList = ResourceUtils.getResourceList(e, ResourceType.MedicationRequest);
    assertThat(medicationRequestList).hasSize(1);
    medicationRequest = ResourceUtils.getResourceMedicationRequest(medicationRequestList.get(0), ResourceUtils.context);
    assertThat(medicationRequest.getReasonCode()).hasSize(1);
    assertThat(medicationRequest.getReasonCodeFirstRep().getCoding()).hasSize(1);
    // ORC.16.1
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getCode()).isEqualTo("4338008");
    // ORC.16.2
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getDisplay()).isEqualTo("Wheezing");
    // ORC.16.3 (unknown system)
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getSystem()).isEqualTo("urn:id:PRN");
}

Example 60 with MR

use of org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7IdentifierFHIRConversionTest method conditionDg1IdentifierTest3.

@Test
void conditionDg1IdentifierTest3() {
    String withDG132 = "MSH|^~\\&|||||201610015080000||ADT^A01^ADT_A01|64322|P|2.6|123|456|ER|AL|USA|ASCII|en|2.6||||||\r" + "PID|||10290^^^WEST^MR||||20040530|M||||||||||||||||||||||N\n" + "PV1||I||||||||SUR||||||||S||A|||||||||||||||||||SF|K||||20170215080000\n" + "DG1|1|ICD10|^Ovarian Cancer|Test|20210322154449|A|E123|R45|Y|J76|C|15|1458.98||1|123^DOE^JOHN^A^|C|Y|20210322154326||S1234|Parent Diagnosis|Value345|Group567|DiagnosisG45|Y\r";
    Condition condition = ResourceUtils.getCondition(ftv, withDG132);
    // Expect 2 identifiers
    assertThat(condition.hasIdentifier()).isTrue();
    assertThat(condition.getIdentifier()).hasSize(2);
    List<Identifier> identifiers = condition.getIdentifier();
    // Match the id's to position; we can't depend on an order.
    int posVN = getIdentifierPositionByValue("201610015080000", identifiers);
    assertThat(posVN).isNotSameAs(-1);
    int posExtId = getIdentifierPositionByValue("Ovarian Cancer", identifiers);
    assertThat(posExtId).isNotSameAs(-1);
    // Identifier 1: Visit number
    Identifier identifier = condition.getIdentifier().get(posVN);
    String value = identifier.getValue();
    String system = identifier.getSystem();
    // MSH.7
    assertThat(value).isEqualTo("201610015080000");
    assertThat(system).isNull();
    CodeableConcept type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "VN", "Visit number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // Identifier 3: DG1.3.2
    identifier = condition.getIdentifier().get(posExtId);
    value = identifier.getValue();
    system = identifier.getSystem();
    // DG1.3.2
    assertThat(value).isEqualTo("Ovarian Cancer");
    assertThat(system).isEqualTo("urn:id:extID");
}