Examples with MR org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR used on opensource projects

Example 36 with MR

use of org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7IdentifierFHIRConversionTest method conditionDg1IdentifierTest2.

@Test
void conditionDg1IdentifierTest2() {
    // Test PV1-19 for visit number; extID with DG1-3.1.
    // Also test DG1-20 creates additional identifiers.
    String withDG120 = "MSH|^~\\&|||||||ADT^A01^ADT_A01|64322|P|2.6|123|456|ER|AL|USA|ASCII|en|2.6||||||\r" + "PID|||10290^^^WEST^MR||||20040530|M||||||||||||||||||||||N\n" + "PV1||I||||||||SUR||||||||S|8846511^^^ACME|A|||||||||||||||||||SF|K||||20170215080000\n" + "DG1|1|ICD10|B45678|Broken Arm|20210322154449|A|E123|R45|Y|J76|C|15|1458.98||1|123^DOE^JOHN^A^|C|Y|20210322154326|one^https://terminology.hl7.org/CodeSystem/two^three^https://terminology.hl7.org/CodeSystem/four|S1234|Parent Diagnosis|Value345|Group567|DiagnosisG45|Y\r";
    Condition condition = ResourceUtils.getCondition(ftv, withDG120);
    // Expect 4 identifiers
    assertThat(condition.hasIdentifier()).isTrue();
    assertThat(condition.getIdentifier()).hasSize(4);
    List<Identifier> identifiers = condition.getIdentifier();
    // Match the id's to position; we can't depend on an order.
    int posVN = getIdentifierPositionByValue("8846511", identifiers);
    assertThat(posVN).isNotSameAs(-1);
    int posExtId = getIdentifierPositionByValue("B45678", identifiers);
    assertThat(posExtId).isNotSameAs(-1);
    int posExtDG20a = getIdentifierPositionByValue("one", identifiers);
    assertThat(posExtDG20a).isNotSameAs(-1);
    int posExtDG20b = getIdentifierPositionByValue("three", identifiers);
    assertThat(posExtDG20b).isNotSameAs(-1);
    // Identifier 1: Visit number
    Identifier identifier = condition.getIdentifier().get(posVN);
    String value = identifier.getValue();
    String system = identifier.getSystem();
    // PV1.19.1
    assertThat(value).isEqualTo("8846511");
    // PV1.19.4
    assertThat(system).isEqualTo("urn:id:ACME");
    CodeableConcept type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "VN", "Visit number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // Identifier 2: DG1.3.1
    identifier = condition.getIdentifier().get(posExtId);
    value = identifier.getValue();
    system = identifier.getSystem();
    // DG1.3.1
    assertThat(value).isEqualTo("B45678");
    assertThat(system).isEqualTo("urn:id:extID");
    // Identifier 3: DG1.20.1 and DG1.20.2
    identifier = condition.getIdentifier().get(posExtDG20a);
    value = identifier.getValue();
    system = identifier.getSystem();
    // DG1.20.1
    assertThat(value).isEqualTo("one");
    // DG1.20.2
    assertThat(system).isEqualTo("https://terminology.hl7.org/CodeSystem/two");
    // Identifier 4: DG1.20.3 and DG1.20.4
    identifier = condition.getIdentifier().get(posExtDG20b);
    value = identifier.getValue();
    system = identifier.getSystem();
    // DG1.20.3
    assertThat(value).isEqualTo("three");
    // DG1.20.4
    assertThat(system).isEqualTo("https://terminology.hl7.org/CodeSystem/four");
}

Example 37 with MR

use of org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7IdentifierFHIRConversionTest method observationIdentifierTest.

@Test
void observationIdentifierTest() {
    // identifier uses the logic from BUILD_IDENTIFIER_FROM_CWE (OBX.3) and joins FILL or PLAC values with it
    // Filler from OBR-3; OBX-3.1/OBX-3.3
    String joinFillPlaAndObx3 = "MSH|^~\\&|SOARF|E_AMC|||201512201012||ADT^A01|MSG$1|P|2.7||1|||||||\r" + "EVN|A01|201512201012||CI|wiestc|201512201007|1488\r" + "PID|||MRN12345678^^^ID-XYZ^MR~111223333^^^USA^SS~MN1234567^^^MNDOT^DL||||||||||||||\r" + "PV1|1|I|E2^E211^E211B^1488|Elective||||||||||V\r" + "OBR|1|ORD448811^NIST EHR|R-511^NIST Lab Filler|1000^Hepatitis A B C Panel^99USL|||20120628070100|||||||||\r" + "OBX|1|ST|DINnumber^^LSFUSERDATAE||N/A||||||R||||||\r";
    Observation observation = ResourceUtils.getObservation(ftv, joinFillPlaAndObx3);
    // Expect a single identifier
    assertThat(observation.hasIdentifier()).isTrue();
    assertThat(observation.getIdentifier()).hasSize(1);
    // Identifier 1: extID from OBR.3 plus OBX-3.1/OBX-3.3
    Identifier identifier = observation.getIdentifier().get(0);
    String value = identifier.getValue();
    String system = identifier.getSystem();
    // OBR.3.1-OBX.3.1-OBX.3.3
    assertThat(value).isEqualTo("R-511-DINnumber-LSFUSERDATAE");
    assertThat(system).isEqualTo("urn:id:extID");
    // Placer from OBR-2; OBX-3.1
    String msg = "MSH|^~\\&|SOARF|E_AMC|||201512201012||ADT^A01|MSG$1|P|2.7||1|||||||\r" + "EVN|A01|201512201012||CI|wiestc|201512201007|1488\r" + "PID|||MRN12345678^^^ID-XYZ^MR~111223333^^^USA^SS~MN1234567^^^MNDOT^DL||||||||||||||\r" + "PV1|1|I|E2^E211^E211B^1488|Elective||||||||||V\r" + "OBR|1|ORD448811^NIST EHR|^NIST Lab Filler|1000^Hepatitis A B C Panel^99USL|||20120628070100|||||||||\r" + "OBX|1|ST|DINnumber^^||N/A||||||R||||||\r";
    observation = ResourceUtils.getObservation(ftv, msg);
    // Expect a single identifier
    assertThat(observation.hasIdentifier()).isTrue();
    assertThat(observation.getIdentifier()).hasSize(1);
    // Identifier 1: extID from OBR.2 and OBX-3.1
    identifier = observation.getIdentifier().get(0);
    value = identifier.getValue();
    system = identifier.getSystem();
    // OBR.2.1-OBX.3.1
    assertThat(value).isEqualTo("ORD448811-DINnumber");
    assertThat(system).isEqualTo("urn:id:extID");
    // Filler from ORC-3; OBX-3.2
    msg = "MSH|^~\\&|SendTest1|Sendfac1|Receiveapp1|Receivefac1|200603081747|security|PPR^PC1^PPR_PC1|1|P^I|2.6||||||ASCII||\r" + "PID|||555444222111^^^MPI&GenHosp&L^MR||james^anderson||19600614|M||C|||^^^^^626^5641111|^^^^^626^5647654||||||||N\r" + "PV1||I|6N^1234^A^GENHOS||||0100^ANDERSON^CARL|0148^ADDISON^JAMES||SUR|||||||0148^ANDERSON^CARL|S|1400|A|||||||||||||||||||SF|K||||199501102300\r" + "PRB|AD|200603150625|aortic stenosis|53692||2||200603150625\r" + "OBX|1|ST|DINnumber^^LSFUSERDATAE||ECHOCARDIOGRAPHIC REPORT||||||F|||20150930164100|||\r" + "ORC|NW|PON001|FON001|PGN001|SC|D|1||20170825010500|MS|MS||||20170825010500|";
    observation = ResourceUtils.getObservation(ftv, msg);
    // Expect a single identifier
    assertThat(observation.hasIdentifier()).isTrue();
    assertThat(observation.getIdentifier()).hasSize(1);
    // Identifier 1: extID from OBR.3 plus OBX-3.1/OBX-3.3
    identifier = observation.getIdentifier().get(0);
    value = identifier.getValue();
    system = identifier.getSystem();
    // ORC.3-OBX.3.1-OBX.3.3
    assertThat(value).isEqualTo("FON001-DINnumber-LSFUSERDATAE");
    assertThat(system).isEqualTo("urn:id:extID");
    // Placer from ORC-2; OBX-3.1
    msg = "MSH|^~\\&|SendTest1|Sendfac1|Receiveapp1|Receivefac1|200603081747|security|PPR^PC1^PPR_PC1|1|P^I|2.6||||||ASCII||\r" + "PID|||555444222111^^^MPI&GenHosp&L^MR||james^anderson||19600614|M||C|99 Oakland #106^^qwerty^OH^44889||||||||||N\r" + "PV1||I|6N^1234^A^GENHOS||||0100^ANDERSON^CARL|0148^ADDISON^JAMES||SUR|||||||0148^ANDERSON^CARL|S|1400|A||SF|K||||199501102300\r" + "PRB|AD|200603150625|aortic stenosis|53692||2||200603150625\r" + "OBX|1|ST|DINnumber||ECHOCARDIOGRAPHIC REPORT||||||F|||20150930164100|||\r" + "ORC|NW|PON001|||SC|D|1||20170825010500|MS|MS|||||";
    observation = ResourceUtils.getObservation(ftv, msg);
    // Expect a single identifier
    assertThat(observation.hasIdentifier()).isTrue();
    assertThat(observation.getIdentifier()).hasSize(1);
    // Identifier 1: extID from OBR.2 and OBX-3.1
    identifier = observation.getIdentifier().get(0);
    value = identifier.getValue();
    system = identifier.getSystem();
    // ORC.2-OBX.3.1
    assertThat(value).isEqualTo("PON001-DINnumber");
    assertThat(system).isEqualTo("urn:id:extID");
}

Example 38 with MR

use of org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7IdentifierFHIRConversionTest method encounterIdentifierTest.

@Test
void encounterIdentifierTest() {
    // Test: Visit number from PV1-19
    String encounterMsg = "MSH|^~\\&|MYEHR2.5|RI88140101|KIDSNET_IFL|RIHEALTH|20130531||VXU^V04^VXU_V04|20130531RI881401010105|P|2.6|||AL|NE|764|ASCII||||||^4086::132:2A57:3C28^IPv6\r" + "EVN|A01|20130617154644||01\r" + "PID|||12345^^^^MR||smith^john|||||||||||||112233\r" + "PV1||I||||||||SUR||||||||S||A\r";
    Encounter encounter = ResourceUtils.getEncounter(ftv, encounterMsg);
    // Expect a single identifier
    assertThat(encounter.hasIdentifier()).isTrue();
    assertThat(encounter.getIdentifier()).hasSize(1);
    // Identifier 1: Visit number
    Identifier identifier = encounter.getIdentifier().get(0);
    String value = identifier.getValue();
    String system = identifier.getSystem();
    // PID.18
    assertThat(value).isEqualTo("112233");
    assertThat(system).isNull();
    CodeableConcept type = identifier.getType();
    Coding coding = type.getCoding().get(0);
    assertThat(type.getText()).isNull();
    assertThat(coding.getSystem()).isEqualTo("http://terminology.hl7.org/CodeSystem/v2-0203");
    assertThat(coding.getCode()).isEqualTo("VN");
    assertThat(coding.getDisplay()).isEqualTo("Visit number");
}

Example 39 with MR

use of org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7IdentifierFHIRConversionTest method serviceRequestIdentifierTest5.

// NOTE: ORU_RO1 records do not create the ServiceRequest directly.  They create a DiagnosticReport and it creates the ServiceRequest.
// This test makes sure the specification for ORU_RO1.DiagnosticReport is specifying PID and PV1 correctly in AdditionalSegments.
@Test
void serviceRequestIdentifierTest5() {
    // Test 3:
    // - MSH.7 as the visit number
    // - filler from ORC
    // - placer from ORC
    String serviceRequest = "MSH|^~\\&|||||20180924152907|34001|ORU^R01^ORU_R01|213|T|2.6|||||||||||\n" + // PID.18 is empty so MSH.7 with be used as backup identifier visit number
    "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + // PV1.19 is empty so MSH.7 with be used as backup identifier visit number
    "PV1|1|E|||||||||||||||||||||||||||||||||||||||||||\n" + // 1. ORC.3 is used as Filler because it has priority over OBR.3
    "ORC|RE|222298|222299|ML18267-C00001^Beaker||||||||||||||||||||||||||||\n" + // 11. OBR.3 ignored as Filler
    "OBR|1|||83036E^HEMOGLOBIN A1C^PACSEAP^^^^^^HEMOGLOBIN A1C|||||||||||||||||||||||||||||||||||||||||||\n";
    ServiceRequest serviceReq = ResourceUtils.getServiceRequest(ftv, serviceRequest);
    // Expect 3 identifiers
    assertThat(serviceReq.hasIdentifier()).isTrue();
    assertThat(serviceReq.getIdentifier()).hasSize(3);
    // Expect 3 identifiers
    assertThat(serviceReq.hasIdentifier()).isTrue();
    assertThat(serviceReq.getIdentifier()).hasSize(3);
    List<Identifier> identifiers = serviceReq.getIdentifier();
    // Match the three id's to position; we can't depend on an order.
    int posVN = getIdentifierPositionByValue("20180924152907", identifiers);
    assertThat(posVN).isNotSameAs(-1);
    int posFILLER = getIdentifierPositionByValue("222299", identifiers);
    assertThat(posFILLER).isNotSameAs(-1);
    int posPLACER = getIdentifierPositionByValue("222298", identifiers);
    assertThat(posPLACER).isNotSameAs(-1);
    // Identifier 1: visit number should be set by MSH.7
    Identifier identifier = serviceReq.getIdentifier().get(posVN);
    String value = identifier.getValue();
    String system = identifier.getSystem();
    // MSH.7
    assertThat(value).isEqualTo("20180924152907");
    assertThat(system).isNull();
    CodeableConcept type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "VN", "Visit number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // Identifier 2: filler
    identifier = serviceReq.getIdentifier().get(posFILLER);
    value = identifier.getValue();
    system = identifier.getSystem();
    // ORC.3
    assertThat(value).isEqualTo("222299");
    assertThat(system).isNull();
    type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "FILL", "Filler Identifier", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // Identifier 3: placer
    identifier = serviceReq.getIdentifier().get(posPLACER);
    value = identifier.getValue();
    system = identifier.getSystem();
    // ORC.2
    assertThat(value).isEqualTo("222298");
    assertThat(system).isNull();
    type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "PLAC", "Placer Identifier", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
}

Example 40 with MR

use of org.hl7.fhir.r4.model.codesystems.V3Hl7PublishingDomain.MR in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7OrderRequestFHIRConversionTest method testAdditionalOBRFieldsNoORCSegment.

@Test
void testAdditionalOBRFieldsNoORCSegment() {
    String hl7message = "MSH|^~\\&|Epic|ATRIUS|||20180924152907|34001|ORU^R01^ORU_R01|213|T|2.6|||||||||PHLabReport-Ack^^2.16.840.1.114222.4.10.3^ISO||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + "PV1|1|E|||||||||||||||||||||||||||||||||||||||||||\n" + // ORC.15 is missing, so use OBR.7 as ServiceRequest.occurrenceDateTime
    "OBR|1|248648498^|248648498^|83036E^HEMOGLOBIN A1C^PACSEAP^^^^^^HEMOGLOBIN A1C|||20170707120707|20180808120808|||||||||||||||||F|||||||||||||||||||||||||\n";
    String json = ftv.convert(hl7message, PatientUtils.OPTIONS);
    assertThat(json).isNotBlank();
    IBaseResource bundleResource = context.getParser().parseResource(json);
    assertThat(bundleResource).isNotNull();
    Bundle bundle = (Bundle) bundleResource;
    List<BundleEntryComponent> e = bundle.getEntry();
    List<Resource> diagnosticReportList = ResourceUtils.getResourceList(e, ResourceType.DiagnosticReport);
    DiagnosticReport diagnosticReport = ResourceUtils.getResourceDiagnosticReport(diagnosticReportList.get(0), context);
    // OBR.7 and OBR.8 together map to DiagnosticReport.effectivePeriod
    assertThat(diagnosticReport.hasEffectivePeriod()).isTrue();
    assertThat(diagnosticReport.getEffectivePeriod().getStartElement().toString()).containsPattern("2017-07-07T12:07:07");
    assertThat(diagnosticReport.getEffectivePeriod().getEndElement().toString()).containsPattern("2018-08-08T12:08:08");
    List<Resource> serviceRequestList = e.stream().filter(v -> ResourceType.ServiceRequest == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
    // Important that we have exactly one service request (no duplication).  OBR creates it as a reference.
    assertThat(serviceRequestList).hasSize(1);
    ServiceRequest serviceRequest = ResourceUtils.getResourceServiceRequest(serviceRequestList.get(0), context);
    assertThat(serviceRequest.hasStatus()).isTrue();
    // OBR.7 should create an ServiceRequest.occurrenceDateTime date
    assertThat(serviceRequest.hasOccurrenceDateTimeType()).isTrue();
    assertThat(serviceRequest.getOccurrenceDateTimeType().toString()).containsPattern("2017-07-07T12:07:07");
    // ORC.5 is missing, so serviceRequest.status() should be unknown
    assertThat(serviceRequest.hasStatus()).isTrue();
    assertThat(serviceRequest.getStatusElement().getCode()).isEqualTo("unknown");
}