Examples with NarrativeGenerator org.hl7.fhir.r4.utils.NarrativeGenerator used on opensource projects

Example 6 with NarrativeGenerator

use of org.hl7.fhir.r4.utils.NarrativeGenerator in project org.hl7.fhir.core by hapifhir.

the class QuestionnaireBuilder method build.

public void build() throws FHIRException {
    if (profile == null)
        throw new DefinitionException("QuestionnaireBuilder.build: no profile found");
    if (resource != null)
        if (!profile.getType().equals(resource.getResourceType().toString()))
            throw new DefinitionException("Wrong Type");
    if (prebuiltQuestionnaire != null)
        questionnaire = prebuiltQuestionnaire;
    else
        questionnaire = new Questionnaire();
    if (resource != null)
        response = new QuestionnaireResponse();
    processMetadata();
    List<ElementDefinition> list = new ArrayList<ElementDefinition>();
    List<QuestionnaireResponse.QuestionnaireResponseItemComponent> answerGroups = new ArrayList<QuestionnaireResponse.QuestionnaireResponseItemComponent>();
    if (resource != null)
        answerGroups.addAll(response.getItem());
    if (prebuiltQuestionnaire != null) {
        // give it a fake group to build
        Questionnaire.QuestionnaireItemComponent group = new Questionnaire.QuestionnaireItemComponent();
        group.setType(QuestionnaireItemType.GROUP);
        buildGroup(group, profile, profile.getSnapshot().getElement().get(0), list, answerGroups);
    } else
        buildGroup(questionnaire.getItem().get(0), profile, profile.getSnapshot().getElement().get(0), list, answerGroups);
// 
// NarrativeGenerator ngen = new NarrativeGenerator(context);
// ngen.generate(result);
// 
// if FResponse <> nil then
// FResponse.collapseAllContained;
}

Example 7 with NarrativeGenerator

use of org.hl7.fhir.r4.utils.NarrativeGenerator in project org.hl7.fhir.core by hapifhir.

the class ResourceRoundTripTests method test.

@Test
public void test() throws FileNotFoundException, IOException, FHIRException, EOperationOutcome {
    if (TestingUtilities.context == null)
        TestingUtilities.context = SimpleWorkerContext.fromPack("C:\\work\\org.hl7.fhir\\build\\publish\\definitions.xml.zip");
    Resource res = new XmlParser().parse(new FileInputStream("C:\\work\\org.hl7.fhir\\build\\tests\\resources\\unicode.xml"));
    new NarrativeGenerator("", "", TestingUtilities.context).generate((DomainResource) res);
    new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream("C:\\work\\org.hl7.fhir\\build\\tests\\resources\\unicode.out.xml"), res);
}

Example 8 with NarrativeGenerator

use of org.hl7.fhir.r4.utils.NarrativeGenerator in project org.hl7.fhir.core by hapifhir.

the class ResourceRoundTripTests method test.

@Test
@Disabled
public void test() throws FileNotFoundException, IOException, FHIRException, EOperationOutcome, UcumException {
    Resource res = new XmlParser().parse(new FileInputStream(TestingUtilities.resourceNameToFile("unicode.xml")));
    new NarrativeGenerator("", "", TestingUtilities.context()).generate((DomainResource) res, null);
    new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(TestingUtilities.resourceNameToFile("gen", "unicode.out.xml")), res);
}

Example 9 with NarrativeGenerator

use of org.hl7.fhir.r4.utils.NarrativeGenerator in project org.hl7.fhir.core by hapifhir.

the class SnapShotGenerationTests method testGen.

private void testGen(TestDetails test, SnapShotGenerationTestsContext context) throws Exception {
    if (!Utilities.noString(test.register)) {
        ProfileUtilities pu = new ProfileUtilities(TestingUtilities.context(), null, null);
        pu.setNewSlicingProcessing(true);
        List<String> errors = new ArrayList<String>();
        pu.setIds(test.included, false);
        StructureDefinition base = TestingUtilities.context().fetchResource(StructureDefinition.class, test.included.getBaseDefinition());
        pu.generateSnapshot(base, test.included, test.included.getUrl(), "http://test.org/profile", test.included.getName());
        TestingUtilities.context().cacheResource(test.included);
    }
    StructureDefinition base = getSD(test.getSource().getBaseDefinition(), context);
    if (!base.getUrl().equals(test.getSource().getBaseDefinition()))
        throw new Exception("URL mismatch on base: " + base.getUrl() + " wanting " + test.getSource().getBaseDefinition());
    StructureDefinition output = test.getSource().copy();
    ProfileUtilities pu = new ProfileUtilities(TestingUtilities.context(), messages, new TestPKP());
    pu.setNewSlicingProcessing(true);
    pu.setThrowException(true);
    pu.setDebug(true);
    pu.setIds(test.getSource(), false);
    if (test.isSort()) {
        List<String> errors = new ArrayList<String>();
        int lastCount = output.getDifferential().getElement().size();
        pu.sortDifferential(base, output, test.getSource().getName(), errors);
        if (errors.size() > 0)
            throw new FHIRException("Sort failed: " + errors.toString());
    }
    try {
        pu.generateSnapshot(base, output, test.getSource().getUrl(), "http://test.org/profile", test.getSource().getName());
    } catch (Throwable e) {
        System.out.println("\r\nException: " + e.getMessage());
        throw e;
    }
    if (output.getDifferential().hasElement())
        new NarrativeGenerator("", "http://hl7.org/fhir", TestingUtilities.context()).setPkp(new TestPKP()).generate(output, null);
    test.output = output;
    TestingUtilities.context().cacheResource(output);
    new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(TestingUtilities.resourceNameToFile("snapshot-generation", test.getId() + "-actual.xml")), output);
    StructureDefinition t1 = test.expected.copy();
    t1.setText(null);
    StructureDefinition t2 = test.output.copy();
    t2.setText(null);
    Assertions.assertTrue(t1.equalsDeep(t2), "Output does not match expected");
}

Example 10 with NarrativeGenerator

use of org.hl7.fhir.r4.utils.NarrativeGenerator in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method addMarkdown.

private void addMarkdown(XhtmlNode x, String text) throws FHIRFormatError, IOException, DefinitionException {
    if (text != null) {
        // 1. custom FHIR extensions
        while (text.contains("[[[")) {
            String left = text.substring(0, text.indexOf("[[["));
            String link = text.substring(text.indexOf("[[[") + 3, text.indexOf("]]]"));
            String right = text.substring(text.indexOf("]]]") + 3);
            String url = link;
            String[] parts = link.split("\\#");
            StructureDefinition p = context.fetchResource(StructureDefinition.class, parts[0]);
            if (p == null)
                p = context.fetchTypeDefinition(parts[0]);
            if (p == null)
                p = context.fetchResource(StructureDefinition.class, link);
            if (p != null) {
                url = p.getUserString("path");
                if (url == null)
                    url = p.getUserString("filename");
            } else
                throw new DefinitionException("Unable to resolve markdown link " + link);
            text = left + "[" + link + "](" + url + ")" + right;
        }
        // 2. markdown
        String s = new MarkDownProcessor(Dialect.DARING_FIREBALL).process(Utilities.escapeXml(text), "NarrativeGenerator");
        XhtmlParser p = new XhtmlParser();
        XhtmlNode m;
        try {
            m = p.parse("<div>" + s + "</div>", "div");
        } catch (org.hl7.fhir.exceptions.FHIRFormatError e) {
            throw new FHIRFormatError(e.getMessage(), e);
        }
        x.getChildNodes().addAll(m.getChildNodes());
    }
}