Examples with IWorkerContext org.hl7.fhir.r4b.context.IWorkerContext used on opensource projects

Example 21 with IWorkerContext

use of org.hl7.fhir.r4b.context.IWorkerContext in project org.hl7.fhir.core by hapifhir.

the class Tester method main.

public static void main(String[] args) throws Exception {
    IWorkerContext context = SimpleWorkerContext.fromPack(Utilities.path("C:\\work\\org.hl7.fhir\\build\\publish", "validation-min.xml.zip"));
    int t = 0;
    int ok = 0;
    for (String f : new File("C:\\work\\org.hl7.fhir\\build\\publish").list()) {
        if (f.endsWith(".xml") && !f.endsWith(".canonical.xml") && !f.contains("profile") && !f.contains("questionnaire") && new File("C:\\work\\org.hl7.fhir\\build\\publish\\" + Utilities.changeFileExt(f, ".ttl")).exists()) {
            // if (f.equals("account-questionnaire.xml")) {
            System.out.print("convert " + f);
            // Manager.convert(context, new FileInputStream("C:\\work\\org.hl7.fhir\\build\\publish\\"+f), FhirFormat.XML,
            // new FileOutputStream("C:\\work\\org.hl7.fhir\\build\\publish\\"+Utilities.changeFileExt(f, ".mm.json")), FhirFormat.JSON, OutputStyle.PRETTY);
            // String src = normalise(TextFile.fileToString("C:\\work\\org.hl7.fhir\\build\\publish\\"+Utilities.changeFileExt(f, ".mm.json")));
            // String tgt = normalise(TextFile.fileToString("C:\\work\\org.hl7.fhir\\build\\publish\\"+Utilities.changeFileExt(f, ".json")));
            Element e = Manager.parse(context, new FileInputStream("C:\\work\\org.hl7.fhir\\build\\publish\\" + f), FhirFormat.XML);
            Manager.compose(context, e, new FileOutputStream("C:\\work\\org.hl7.fhir\\build\\publish\\" + Utilities.changeFileExt(f, ".mm.ttl")), FhirFormat.TURTLE, OutputStyle.PRETTY, null);
            Manager.compose(context, e, new FileOutputStream(Utilities.path("[tmp]", "resource.xml")), FhirFormat.XML, OutputStyle.PRETTY, null);
            String src = TextFile.fileToString("C:\\work\\org.hl7.fhir\\build\\publish\\" + Utilities.changeFileExt(f, ".mm.ttl"));
            String tgt = TextFile.fileToString("C:\\work\\org.hl7.fhir\\build\\publish\\" + Utilities.changeFileExt(f, ".ttl"));
            t++;
            if (src.equals(tgt)) {
                System.out.println(".. ok");
                ok++;
            } else
                System.out.println(".. fail");
        }
    // }
    }
    System.out.println("done - " + Integer.toString(t) + " files, " + Integer.toString(ok) + " ok");
}

Example 22 with IWorkerContext

use of org.hl7.fhir.r4b.context.IWorkerContext in project org.hl7.fhir.core by hapifhir.

the class ValueSetUtilities method markStatus.

public static void markStatus(ValueSet vs, String wg, StandardsStatus status, String pckage, String fmm, IWorkerContext context, String normativeVersion) throws FHIRException {
    if (vs.hasUserData("external.url"))
        return;
    if (wg != null) {
        if (!ToolingExtensions.hasExtension(vs, ToolingExtensions.EXT_WORKGROUP) || (!Utilities.existsInList(ToolingExtensions.readStringExtension(vs, ToolingExtensions.EXT_WORKGROUP), "fhir", "vocab") && Utilities.existsInList(wg, "fhir", "vocab"))) {
            ToolingExtensions.setCodeExtension(vs, ToolingExtensions.EXT_WORKGROUP, wg);
        }
    }
    if (status != null) {
        StandardsStatus ss = ToolingExtensions.getStandardsStatus(vs);
        if (ss == null || ss.isLowerThan(status))
            ToolingExtensions.setStandardsStatus(vs, status, normativeVersion);
        if (pckage != null) {
            if (!vs.hasUserData("ballot.package"))
                vs.setUserData("ballot.package", pckage);
            else if (!pckage.equals(vs.getUserString("ballot.package")))
                if (!"infrastructure".equals(vs.getUserString("ballot.package")))
                    System.out.println("Value Set " + vs.getUrl() + ": ownership clash " + pckage + " vs " + vs.getUserString("ballot.package"));
        }
        if (status == StandardsStatus.NORMATIVE) {
            vs.setExperimental(false);
            vs.setStatus(PublicationStatus.ACTIVE);
        }
    }
    if (fmm != null) {
        String sfmm = ToolingExtensions.readStringExtension(vs, ToolingExtensions.EXT_FMM_LEVEL);
        if (Utilities.noString(sfmm) || Integer.parseInt(sfmm) < Integer.parseInt(fmm))
            ToolingExtensions.setIntegerExtension(vs, ToolingExtensions.EXT_FMM_LEVEL, Integer.parseInt(fmm));
    }
    if (vs.hasUserData("cs"))
        CodeSystemUtilities.markStatus((CodeSystem) vs.getUserData("cs"), wg, status, pckage, fmm, normativeVersion);
    else if (status == StandardsStatus.NORMATIVE && context != null) {
        for (ConceptSetComponent csc : vs.getCompose().getInclude()) {
            if (csc.hasSystem()) {
                CodeSystem cs = context.fetchCodeSystem(csc.getSystem());
                if (cs != null) {
                    CodeSystemUtilities.markStatus(cs, wg, status, pckage, fmm, normativeVersion);
                }
            }
        }
    }
}

Example 23 with IWorkerContext

use of org.hl7.fhir.r4b.context.IWorkerContext in project org.hl7.fhir.core by hapifhir.

the class TestingUtilities method context.

public static IWorkerContext context() {
    if (fcontext == null) {
        FilesystemPackageCacheManager pcm;
        try {
            pcm = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION);
            fcontext = SimpleWorkerContext.fromPackage(pcm.loadPackage("hl7.fhir.r4.core", "4.0.1"));
            fcontext.setUcumService(new UcumEssenceService(TestingUtilities.resourceNameToFile("ucum", "ucum-essence.xml")));
            fcontext.setExpansionProfile(new Parameters());
        } catch (Exception e) {
            throw new Error(e);
        }
    }
    return fcontext;
}

Example 24 with IWorkerContext

use of org.hl7.fhir.r4b.context.IWorkerContext in project org.hl7.fhir.core by hapifhir.

the class Manager method build.

public static Element build(IWorkerContext context, StructureDefinition sd) {
    Property p = new Property(context, sd.getSnapshot().getElementFirstRep(), sd);
    Element e = new Element(null, p);
    return e;
}

Example 25 with IWorkerContext

use of org.hl7.fhir.r4b.context.IWorkerContext in project org.hl7.fhir.core by hapifhir.

the class ValueSetUtilities method markStatus.

public static void markStatus(ValueSet vs, String wg, StandardsStatus status, String pckage, String fmm, IWorkerContext context, String normativeVersion) throws FHIRException {
    if (vs.hasUserData("external.url"))
        return;
    if (wg != null) {
        if (!ToolingExtensions.hasExtension(vs, ToolingExtensions.EXT_WORKGROUP) || (!Utilities.existsInList(ToolingExtensions.readStringExtension(vs, ToolingExtensions.EXT_WORKGROUP), "fhir", "vocab") && Utilities.existsInList(wg, "fhir", "vocab"))) {
            ToolingExtensions.setCodeExtension(vs, ToolingExtensions.EXT_WORKGROUP, wg);
        }
    }
    if (status != null) {
        StandardsStatus ss = ToolingExtensions.getStandardsStatus(vs);
        if (ss == null || ss.isLowerThan(status))
            ToolingExtensions.setStandardsStatus(vs, status, normativeVersion);
        if (pckage != null) {
            if (!vs.hasUserData("ballot.package"))
                vs.setUserData("ballot.package", pckage);
            else if (!pckage.equals(vs.getUserString("ballot.package")))
                if (!"infrastructure".equals(vs.getUserString("ballot.package")))
                    System.out.println("Value Set " + vs.getUrl() + ": ownership clash " + pckage + " vs " + vs.getUserString("ballot.package"));
        }
        if (status == StandardsStatus.NORMATIVE) {
            vs.setExperimental(false);
            vs.setStatus(PublicationStatus.ACTIVE);
        }
    }
    if (fmm != null) {
        String sfmm = ToolingExtensions.readStringExtension(vs, ToolingExtensions.EXT_FMM_LEVEL);
        if (Utilities.noString(sfmm) || Integer.parseInt(sfmm) < Integer.parseInt(fmm)) {
            ToolingExtensions.setIntegerExtension(vs, ToolingExtensions.EXT_FMM_LEVEL, Integer.parseInt(fmm));
        }
        if (Integer.parseInt(fmm) <= 1) {
            vs.setExperimental(true);
        }
    }
    if (vs.hasUserData("cs"))
        CodeSystemUtilities.markStatus((CodeSystem) vs.getUserData("cs"), wg, status, pckage, fmm, normativeVersion);
    else if (status == StandardsStatus.NORMATIVE && context != null) {
        for (ConceptSetComponent csc : vs.getCompose().getInclude()) {
            if (csc.hasSystem()) {
                CodeSystem cs = context.fetchCodeSystem(csc.getSystem());
                if (cs != null) {
                    CodeSystemUtilities.markStatus(cs, wg, status, pckage, fmm, normativeVersion);
                }
            }
        }
    }
}