use of org.hl7.fhir.dstu3.context.IWorkerContext in project kindling by HL7.
the class TypeParser method convert.
public List<TypeRefComponent> convert(IWorkerContext context, String path, List<TypeRef> types, boolean resource, ElementDefinition ed) throws Exception {
List<TypeRefComponent> list = new ArrayList<TypeRefComponent>();
for (TypeRef t : types) {
// Expand any Resource(A|B|C) references
if (t.hasParams() && !("Reference".equals(t.getName()) || "canonical".equals(t.getName()))) {
throw new Exception("Only resource references can specify parameters. Path " + path);
}
if (t.getParams().size() > 0) {
if (t.getProfile() != null && t.getParams().size() != 1) {
throw new Exception("Cannot declare profile on a resource reference declaring multiple resource types. Path " + path);
}
if (t.getProfile() != null) {
TypeRefComponent childType = getTypeComponent(list, t.getName());
if (t.getVersioning() != null)
childType.setVersioning(t.getVersioning());
if (t.getName().equals("Reference") || t.getName().equals("canonical"))
childType.addTargetProfile(t.getProfile());
else
childType.addProfile(t.getProfile());
} else
for (String param : t.getParams()) {
TypeRefComponent childType = getTypeComponent(list, t.getName());
if (t.getVersioning() != null)
childType.setVersioning(t.getVersioning());
String p = "Any".equals(param) ? "Resource" : param;
if (t.getName().equals("Reference") || t.getName().equals("canonical"))
childType.addTargetProfile("http://hl7.org/fhir/StructureDefinition/" + p);
else
childType.addProfile("http://hl7.org/fhir/StructureDefinition/" + p);
}
} else if (t.isWildcardType()) {
// this list is filled out manually because it may be running before the types referred to have been loaded
for (String n : TypesUtilities.wildcardTypes(version)) {
TypeRefComponent tc = new TypeRefComponent().setCode(n);
if (t.getVersioning() != null)
tc.setVersioning(t.getVersioning());
list.add(tc);
}
} else if (Utilities.noString(t.getName()) && t.getProfile() != null) {
StructureDefinition sd = context.fetchResource(StructureDefinition.class, t.getProfile());
TypeRefComponent tc = getTypeComponent(list, sd != null ? sd.getType() : t.getName());
if (t.getVersioning() != null)
tc.setVersioning(t.getVersioning());
if (t.getName().equals("Reference"))
tc.addTargetProfile(t.getProfile());
else
tc.addProfile(t.getProfile());
} else if (t.getName().startsWith("=")) {
if (resource)
list.add(new TypeRefComponent().setCode("BackboneElement"));
else
list.add(new TypeRefComponent().setCode("Element"));
ToolingExtensions.addStringExtension(ed, "http://hl7.org/fhir/StructureDefinition/structuredefinition-explicit-type-name", t.getName().substring(1));
} else {
StructureDefinition sd = context.fetchTypeDefinition(t.getName());
if (sd == null)
throw new Exception("Unknown type '" + t.getName() + "'");
TypeRefComponent tc = getTypeComponent(list, sd.getType());
if (t.getVersioning() != null)
tc.setVersioning(t.getVersioning());
if (t.getName().equals("Reference")) {
if (t.hasProfile())
tc.addTargetProfile(t.getProfile());
} else if (t.hasProfile())
tc.addProfile(t.getProfile());
}
}
// no duplicates
for (TypeRefComponent tr1 : list) {
for (TypeRefComponent tr2 : list) {
if (tr1 != tr2) {
if (tr1.getWorkingCode().equals(tr2.getWorkingCode()))
throw new Exception("duplicate code " + tr1.getWorkingCode());
}
}
}
return list;
}
use of org.hl7.fhir.dstu3.context.IWorkerContext in project org.hl7.fhir.core by hapifhir.
the class Tester method main.
public static void main(String[] args) throws Exception {
IWorkerContext context = SimpleWorkerContext.fromPack(Utilities.path("C:\\work\\org.hl7.fhir\\build\\publish", "validation-min.xml.zip"));
int t = 0;
int ok = 0;
for (String f : new File("C:\\work\\org.hl7.fhir\\build\\publish").list()) {
if (f.endsWith(".xml") && !f.endsWith(".canonical.xml") && !f.contains("profile") && !f.contains("questionnaire") && new File("C:\\work\\org.hl7.fhir\\build\\publish\\" + Utilities.changeFileExt(f, ".ttl")).exists()) {
// if (f.equals("account-questionnaire.xml")) {
System.out.print("convert " + f);
// Manager.convert(context, new FileInputStream("C:\\work\\org.hl7.fhir\\build\\publish\\"+f), FhirFormat.XML,
// new FileOutputStream("C:\\work\\org.hl7.fhir\\build\\publish\\"+Utilities.changeFileExt(f, ".mm.json")), FhirFormat.JSON, OutputStyle.PRETTY);
// String src = normalise(TextFile.fileToString("C:\\work\\org.hl7.fhir\\build\\publish\\"+Utilities.changeFileExt(f, ".mm.json")));
// String tgt = normalise(TextFile.fileToString("C:\\work\\org.hl7.fhir\\build\\publish\\"+Utilities.changeFileExt(f, ".json")));
Element e = Manager.parse(context, new FileInputStream("C:\\work\\org.hl7.fhir\\build\\publish\\" + f), FhirFormat.XML);
Manager.compose(context, e, new FileOutputStream("C:\\work\\org.hl7.fhir\\build\\publish\\" + Utilities.changeFileExt(f, ".mm.ttl")), FhirFormat.TURTLE, OutputStyle.PRETTY, null);
Manager.compose(context, e, new FileOutputStream(Utilities.path("[tmp]", "resource.xml")), FhirFormat.XML, OutputStyle.PRETTY, null);
String src = TextFile.fileToString("C:\\work\\org.hl7.fhir\\build\\publish\\" + Utilities.changeFileExt(f, ".mm.ttl"));
String tgt = TextFile.fileToString("C:\\work\\org.hl7.fhir\\build\\publish\\" + Utilities.changeFileExt(f, ".ttl"));
t++;
if (src.equals(tgt)) {
System.out.println(".. ok");
ok++;
} else
System.out.println(".. fail");
}
// }
}
System.out.println("done - " + Integer.toString(t) + " files, " + Integer.toString(ok) + " ok");
}
use of org.hl7.fhir.dstu3.context.IWorkerContext in project org.hl7.fhir.core by hapifhir.
the class ResourceUtilities method representDataElementCollection.
public static String representDataElementCollection(IWorkerContext context, Bundle bundle, boolean profileLink, String linkBase) {
StringBuilder b = new StringBuilder();
DataElement common = showDECHeader(b, bundle);
b.append("<table class=\"grid\">\r\n");
List<String> cols = chooseColumns(bundle, common, b, profileLink);
for (BundleEntryComponent e : bundle.getEntry()) {
DataElement de = (DataElement) e.getResource();
renderDE(de, cols, b, profileLink, linkBase);
}
b.append("</table>\r\n");
return b.toString();
}
use of org.hl7.fhir.dstu3.context.IWorkerContext in project org.hl7.fhir.core by hapifhir.
the class CSVWriter method processElement.
/* private void findMapKeys(StructureDefinition def, List<StructureDefinitionMappingComponent> maps, IWorkerContext context) {
maps.addAll(def.getMapping());
if (def.getBaseDefinition()!=null) {
StructureDefinition base = context.fetchResource(StructureDefinition.class, def.getBaseDefinition());
findMapKeys(base, maps, context);
}
}*/
public void processElement(ElementDefinition ed) throws Exception {
CSVLine line = new CSVLine();
lines.add(line);
line.addString(ed.getPath());
line.addString(ed.getSliceName());
line.addString(itemList(ed.getAlias()));
line.addString(ed.getLabel());
line.addValue(ed.getMin());
line.addValue(ed.getMax());
line.addString(ed.getMustSupport() ? "Y" : "");
line.addString(ed.getIsModifier() ? "Y" : "");
line.addString(ed.getIsSummary() ? "Y" : "");
line.addString(itemList(ed.getType()));
line.addString(ed.getShort());
line.addString(ed.getDefinition());
line.addString(ed.getComment());
line.addString(ed.getRequirements());
line.addString(ed.getDefaultValue() != null ? renderType(ed.getDefaultValue()) : "");
line.addString(ed.getMeaningWhenMissing());
line.addString(ed.hasFixed() ? renderType(ed.getFixed()) : "");
line.addString(ed.hasPattern() ? renderType(ed.getPattern()) : "");
// todo...?
line.addString(ed.hasExample() ? renderType(ed.getExample().get(0).getValue()) : "");
line.addString(ed.hasMinValue() ? renderType(ed.getMinValue()) : "");
line.addString(ed.hasMaxValue() ? renderType(ed.getMaxValue()) : "");
line.addValue((ed.hasMaxLength() ? Integer.toString(ed.getMaxLength()) : ""));
if (ed.hasBinding()) {
line.addString(ed.getBinding().getStrength() != null ? ed.getBinding().getStrength().toCode() : "");
line.addString(ed.getBinding().getDescription());
if (ed.getBinding().getValueSet() == null)
line.addString("");
else
line.addString(ed.getBinding().getValueSet());
} else {
line.addValue("");
line.addValue("");
line.addValue("");
}
line.addString(itemList(ed.getCode()));
if (ed.hasSlicing()) {
line.addString(itemList(ed.getSlicing().getDiscriminator()));
line.addString(ed.getSlicing().getDescription());
line.addBoolean(ed.getSlicing().getOrdered());
line.addString(ed.getSlicing().getRules() != null ? ed.getSlicing().getRules().toCode() : "");
} else {
line.addValue("");
line.addValue("");
line.addValue("");
}
if (ed.getBase() != null) {
line.addString(ed.getBase().getPath());
line.addValue(ed.getBase().getMin());
line.addValue(ed.getBase().getMax());
} else {
line.addValue("");
line.addValue("");
line.addValue("");
}
line.addString(itemList(ed.getCondition()));
line.addString(itemList(ed.getConstraint()));
for (StructureDefinitionMappingComponent mapKey : def.getMapping()) {
for (ElementDefinitionMappingComponent map : ed.getMapping()) {
if (map.getIdentity().equals(mapKey.getIdentity()))
line.addString(map.getMap());
}
}
}
use of org.hl7.fhir.dstu3.context.IWorkerContext in project org.hl7.fhir.core by hapifhir.
the class ProfileUtilities method makeExtensionForVersionedURL.
public static StructureDefinition makeExtensionForVersionedURL(IWorkerContext context, String url) {
String epath = url.substring(54);
if (!epath.contains("."))
return null;
String type = epath.substring(0, epath.indexOf("."));
StructureDefinition sd = context.fetchTypeDefinition(type);
if (sd == null)
return null;
ElementDefinition ed = null;
for (ElementDefinition t : sd.getSnapshot().getElement()) {
if (t.getPath().equals(epath)) {
ed = t;
break;
}
}
if (ed == null)
return null;
if ("Element".equals(ed.typeSummary()) || "BackboneElement".equals(ed.typeSummary())) {
return null;
} else {
StructureDefinition template = context.fetchResource(StructureDefinition.class, "http://fhir-registry.smarthealthit.org/StructureDefinition/capabilities");
StructureDefinition ext = template.copy();
ext.setUrl(url);
ext.setId("extension-" + epath);
ext.setName("Extension-" + epath);
ext.setTitle("Extension for r4 " + epath);
ext.setStatus(sd.getStatus());
ext.setDate(sd.getDate());
ext.getContact().clear();
ext.getContact().addAll(sd.getContact());
ext.setFhirVersion(sd.getFhirVersion());
ext.setDescription(ed.getDefinition());
ext.getContext().clear();
ext.addContext().setType(ExtensionContextType.ELEMENT).setExpression(epath.substring(0, epath.lastIndexOf(".")));
ext.getDifferential().getElement().clear();
ext.getSnapshot().getElement().get(3).setFixed(new UriType(url));
ext.getSnapshot().getElement().set(4, ed.copy());
ext.getSnapshot().getElement().get(4).setPath("Extension.value" + Utilities.capitalize(ed.typeSummary()));
return ext;
}
}
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