Examples with BundleEntryComponent org.hl7.fhir.r4b.model.Bundle.BundleEntryComponent used on opensource projects

Example 6 with BundleEntryComponent

use of org.hl7.fhir.r4b.model.Bundle.BundleEntryComponent in project kindling by HL7.

the class Publisher method generateConceptMap.

private void generateConceptMap(ConceptMap cm) throws Exception {
    String filename = cm.getUserString("path");
    RenderingContext lrc = page.getRc().copy().setLocalPrefix("").setTooCostlyNoteEmpty(PageProcessor.TOO_MANY_CODES_TEXT_EMPTY).setTooCostlyNoteNotEmpty(PageProcessor.TOO_MANY_CODES_TEXT_NOT_EMPTY);
    RendererFactory.factory(cm, lrc).render(cm);
    IParser json = new JsonParser().setOutputStyle(OutputStyle.PRETTY);
    FileOutputStream s = new FileOutputStream(page.getFolders().dstDir + Utilities.changeFileExt(filename, ".json"));
    json.compose(s, cm);
    s.close();
    json = new JsonParser().setOutputStyle(OutputStyle.CANONICAL);
    s = new FileOutputStream(page.getFolders().dstDir + Utilities.changeFileExt(filename, ".canonical.json"));
    json.compose(s, cm);
    s.close();
    String n = Utilities.changeFileExt(filename, "");
    jsonToXhtml(n, cm.getName(), resource2Json(cm), "conceptmap-instance", "Concept Map", null, wg("vocab"));
    ttlToXhtml(n, cm.getName(), resource2Ttl(cm), "conceptmap-instance", "Concept Map", null, wg("vocab"));
    IParser xml = new XmlParser().setOutputStyle(OutputStyle.PRETTY);
    s = new FileOutputStream(page.getFolders().dstDir + Utilities.changeFileExt(filename, ".xml"));
    xml.compose(s, cm);
    s.close();
    xml = new XmlParser().setOutputStyle(OutputStyle.CANONICAL);
    s = new FileOutputStream(page.getFolders().dstDir + Utilities.changeFileExt(filename, ".canonical.xml"));
    xml.compose(s, cm);
    s.close();
    cloneToXhtml(n, cm.getName(), false, "conceptmap-instance", "Concept Map", null, wg("vocab"));
    // now, we create an html page from the narrative
    String narrative = new XhtmlComposer(XhtmlComposer.HTML).compose(cm.getText().getDiv());
    String html = TextFile.fileToString(page.getFolders().templateDir + "template-example.html").replace("<%example%>", narrative);
    html = page.processPageIncludes(Utilities.changeFileExt(filename, ".html"), html, "conceptmap-instance", null, null, null, "Concept Map", null, null, wg("vocab"));
    TextFile.stringToFile(html, page.getFolders().dstDir + Utilities.changeFileExt(filename, ".html"));
    conceptMapsFeed.getEntry().add(new BundleEntryComponent().setResource(cm).setFullUrl("http://hl7.org/fhir/" + cm.fhirType() + "/" + cm.getId()));
    page.getConceptMaps().see(cm, page.packageInfo());
    page.getHTMLChecker().registerFile(n + ".html", cm.getName(), HTMLLinkChecker.XHTML_TYPE, false);
}

Example 7 with BundleEntryComponent

use of org.hl7.fhir.r4b.model.Bundle.BundleEntryComponent in project kindling by HL7.

the class Publisher method checkBundleURLs.

/**
 * This is not true of bundles generally, but it is true of all the
 * conformance bundles produced by the spec:
 *
 * all entries must have a fullUrl, and it must equal http://hl7.org/fhir/[type]/[id]
 *
 * @param bnd - the bundle to check
 */
private void checkBundleURLs(Bundle bnd) {
    int i = 0;
    for (BundleEntryComponent e : bnd.getEntry()) {
        i++;
        if (!e.getResource().hasUserData("external.url")) {
            if (!e.hasFullUrl())
                page.getValidationErrors().add(new ValidationMessage(Source.Publisher, IssueType.INVALID, -1, -1, "Bundle " + bnd.getId(), "no Full URL on entry " + Integer.toString(i), IssueSeverity.ERROR));
            else if (!e.getFullUrl().endsWith("/" + e.getResource().getResourceType().toString() + "/" + e.getResource().getId()) && e.getResource().getResourceType() != ResourceType.CodeSystem)
                page.getValidationErrors().add(new ValidationMessage(Source.Publisher, IssueType.INVALID, -1, -1, "Bundle " + bnd.getId(), "URL doesn't match resource and id on entry " + Integer.toString(i) + " : " + e.getFullUrl() + " should end with /" + e.getResource().getResourceType().toString() + "/" + e.getResource().getId(), IssueSeverity.ERROR));
            else if (!e.getFullUrl().equals("http://hl7.org/fhir/" + e.getResource().getResourceType().toString() + "/" + e.getResource().getId()) && e.getResource().getResourceType() != ResourceType.CodeSystem)
                page.getValidationErrors().add(new ValidationMessage(Source.Publisher, IssueType.INVALID, -1, -1, "Bundle " + bnd.getId(), "URL is non-FHIR " + Integer.toString(i) + " : " + e.getFullUrl() + " should start with http://hl7.org/fhir/ for HL7-defined artifacts", IssueSeverity.WARNING));
            if (e.getResource() instanceof CanonicalResource) {
                CanonicalResource m = (CanonicalResource) e.getResource();
                String url = m.getUrl();
                if (url != null && url.startsWith("http://hl7.org/fhir") && !SIDUtilities.isKnownSID(url)) {
                    if (!page.getVersion().toCode().equals(m.getVersion()))
                        page.getValidationErrors().add(new ValidationMessage(Source.Publisher, IssueType.INVALID, -1, -1, "Bundle " + bnd.getId(), "definitions in FHIR space should have the correct version (url = " + url + ", version = " + m.getVersion() + ")", IssueSeverity.ERROR));
                }
            }
        }
    }
}

Example 8 with BundleEntryComponent

use of org.hl7.fhir.r4b.model.Bundle.BundleEntryComponent in project kindling by HL7.

the class SourceParser method loadCommonSearchParameters.

private void loadCommonSearchParameters() throws FHIRFormatError, FileNotFoundException, IOException {
    Bundle bnd = (Bundle) new XmlParser().parse(new CSFileInputStream(Utilities.path(srcDir, "searchparameter", "common-search-parameters.xml")));
    for (BundleEntryComponent be : bnd.getEntry()) {
        SearchParameter sp = (SearchParameter) be.getResource();
        CommonSearchParameter csp = new CommonSearchParameter();
        csp.setId(sp.getId());
        csp.setCode(sp.getCode());
        for (CodeType ct : sp.getBase()) {
            csp.getResources().add(ct.asStringValue());
            definitions.getCommonSearchParameters().put(ct.asStringValue() + "::" + sp.getCode(), csp);
        }
    }
}

Example 9 with BundleEntryComponent

use of org.hl7.fhir.r4b.model.Bundle.BundleEntryComponent in project kindling by HL7.

the class SpreadSheetCreator method addSearchParams.

private void addSearchParams(XSSFWorkbook excel) throws FHIRFormatError, FileNotFoundException, IOException {
    Bundle bnd = (Bundle) parseXml(fnSP());
    XSSFSheet sheet = excel.createSheet(SN_SEARCH);
    addSearchColumns(sheet);
    int rowCount = 0;
    for (BundleEntryComponent be : bnd.getEntry()) {
        rowCount++;
        addSearchParam(sheet, (SearchParameter) be.getResource(), rowCount);
    }
}

Example 10 with BundleEntryComponent

use of org.hl7.fhir.r4b.model.Bundle.BundleEntryComponent in project kindling by HL7.

the class Publisher method addToResourceFeed.

private void addToResourceFeed(CapabilityStatement cs, Bundle dest) throws Exception {
    if (cs.getId() == null)
        throw new Exception("Resource has no id");
    if (ResourceUtilities.getById(dest, ResourceType.ValueSet, cs.getId()) != null)
        throw new Exception("Attempt to add duplicate Conformance " + cs.getId());
    if (!cs.hasText() || !cs.getText().hasDiv()) {
        RendererFactory.factory(cs, page.getRc().copy()).render(cs);
    }
    if (!cs.hasText() || cs.getText().getDiv() == null)
        System.out.println("WARNING: Example CapabilityStatement " + cs.getId() + " does not have any narrative");
    // Changed this from an exception to a warning because generateConformanceStatement doesn't produce narrative if
    // "register" is 'false'
    ResourceUtilities.meta(cs).setLastUpdated(page.getGenDate().getTime());
    if (!cs.getUrl().equals("http://hl7.org/fhir/" + cs.getResourceType().toString() + "/" + cs.getId()))
        throw new Exception("URL mismatch on CapabilityStatement");
    dest.getEntry().add(new BundleEntryComponent().setResource(cs).setFullUrl("http://hl7.org/fhir/" + cs.fhirType() + "/" + cs.getId()));
}