Search in sources :

Example 1 with SearchParameter

use of org.hl7.fhir.r5.model.SearchParameter in project kindling by HL7.

the class Publisher method buildSearchDefinition.

private void buildSearchDefinition(ResourceDefn rd, SearchParameterDefn spd) throws Exception {
    StructureDefinition p = new StructureDefinition();
    p.setFhirVersion(page.getVersion());
    p.setKind(StructureDefinitionKind.RESOURCE);
    p.setAbstract(true);
    p.setPublisher("Health Level Seven International (" + rd.getWg() + ")");
    p.setName(rd.getName());
    p.setVersion(page.getVersion().toCode());
    p.setType(rd.getName());
    p.addContact().addTelecom().setSystem(ContactPointSystem.URL).setValue("http://hl7.org/fhir");
    SearchParameter sp = new ProfileGenerator(page.getDefinitions(), page.getWorkerContext(), page, page.getGenDate(), page.getVersion(), dataElements, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc()).makeSearchParam(p, rd.getName() + "-" + spd.getCode(), rd.getName(), spd, rd);
    spd.setResource(sp);
}
Also used : StructureDefinition(org.hl7.fhir.r5.model.StructureDefinition) ProfileGenerator(org.hl7.fhir.definitions.generators.specification.ProfileGenerator) SearchParameter(org.hl7.fhir.r5.model.SearchParameter)

Example 2 with SearchParameter

use of org.hl7.fhir.r5.model.SearchParameter in project kindling by HL7.

the class Publisher method makeSearchParam.

private CapabilityStatementRestResourceSearchParamComponent makeSearchParam(String name, SearchParamType type, String id, String doco) throws Exception {
    CapabilityStatementRestResourceSearchParamComponent result = new CapabilityStatement.CapabilityStatementRestResourceSearchParamComponent();
    result.setName(name);
    result.setDefinition("http://hl7.org/fhir/SearchParameter/" + id);
    result.setType(type);
    result.setDocumentation(doco);
    return result;
}
Also used : CapabilityStatementRestResourceSearchParamComponent(org.hl7.fhir.r5.model.CapabilityStatement.CapabilityStatementRestResourceSearchParamComponent)

Example 3 with SearchParameter

use of org.hl7.fhir.r5.model.SearchParameter in project kindling by HL7.

the class PageProcessor method processPageIncludes.

public String processPageIncludes(String file, String src, String type, Map<String, String> others, String pagePath, Resource resource, List<String> tabs, String crumbTitle, Object object, ImplementationGuideDefn ig, ResourceDefn rd, WorkGroup wg) throws Exception {
    String workingTitle = null;
    int level = ig == null ? file.contains(File.separator) ? 1 : 0 : ig.isCore() ? 0 : 1;
    boolean even = false;
    String name = file.substring(0, file.lastIndexOf("."));
    String searchAdditions = "";
    while (src.contains("<%") || src.contains("[%")) {
        int i1 = src.indexOf("<%");
        int i2 = i1 == -1 ? -1 : src.substring(i1).indexOf("%>") + i1;
        if (i1 == -1) {
            i1 = src.indexOf("[%");
            i2 = i1 == -1 ? -1 : src.substring(i1).indexOf("%]") + i1;
        }
        String s1 = src.substring(0, i1);
        String s2 = src.substring(i1 + 2, i2).trim();
        String s3 = src.substring(i2 + 2);
        String[] com = s2.split(" ");
        if (s2.startsWith("!")) {
            src = s1 + s3;
        } else if (com.length == 4 && com[0].equals("edt")) {
            if (tabs != null)
                tabs.add("tabs-" + com[1]);
            src = s1 + orgDT(com[1], xmlForDt(com[1], com[2]), treeForDt(com[1]), umlForDt(com[1], com[3]), umlForDt(com[1], com[3] + "b"), profileRef(com[1]), tsForDt(com[1]), jsonForDt(com[1], com[2]), ttlForDt(com[1], com[2]), diffForDt(com[1], com[2])) + s3;
        } else if (com.length == 3 && com[0].equals("dt")) {
            if (tabs != null)
                tabs.add("tabs-" + com[1]);
            src = s1 + orgDT(com[1], xmlForDt(com[1], file), treeForDt(com[1]), umlForDt(com[1], com[2]), umlForDt(com[1], com[2] + "b"), profileRef(com[1]), tsForDt(com[1]), jsonForDt(com[1], file), ttlForDt(com[1], file), diffForDt(com[1], file)) + s3;
        } else if (com.length == 3 && com[0].equals("adt")) {
            if (tabs != null)
                tabs.add("tabs-" + com[1]);
            src = s1 + orgADT(com[1], treeForDt(com[1]), umlForDt(com[1], com[2]), umlForDt(com[1], com[2] + "b"), diffForDt(com[1], file)) + s3;
        } else if (com.length == 2 && com[0].equals("dt.constraints"))
            src = s1 + genConstraints(com[1], genlevel(level)) + s3;
        else if (com.length == 2 && com[0].equals("dt.restrictions"))
            src = s1 + genRestrictions(com[1]) + s3;
        else if (com.length == 2 && com[0].equals("dictionary"))
            src = s1 + dictForDt(com[1]) + s3;
        else if (com[0].equals("othertabs"))
            src = s1 + genOtherTabs(com[1], tabs) + s3;
        else if (com[0].equals("dtheader"))
            src = s1 + dtHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("atheader"))
            src = s1 + atHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("mdtheader"))
            src = s1 + mdtHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("edheader"))
            src = s1 + edHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("elheader"))
            src = s1 + elHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("belheader"))
            src = s1 + belHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("extheader"))
            src = s1 + extHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("mmheader"))
            src = s1 + mmHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("cdheader"))
            src = s1 + cdHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("diheader"))
            src = s1 + diHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("ctheader"))
            src = s1 + ctHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("ucheader"))
            src = s1 + ucHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("rrheader"))
            src = s1 + rrHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("drheader"))
            src = s1 + drHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("adheader"))
            src = s1 + adHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("pdheader"))
            src = s1 + pdHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("tdheader"))
            src = s1 + tdHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("narrheader"))
            src = s1 + narrHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("statheader"))
            src = s1 + statHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("ordistheader"))
            src = s1 + ordistHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("profilesheader"))
            src = s1 + profilesHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("refheader"))
            src = s1 + refHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("resourcesheader"))
            src = s1 + resourcesHeader(com.length > 1 ? com[1] : null) + s3;
        else // src = s1+resourcesHeader(name, com.length > 1 ? com[1] : null)+s3;
        if (com[0].equals("txheader"))
            src = s1 + txHeader(name, com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("sct-vs-list"))
            src = s1 + getSnomedCTVsList() + s3;
        else if (com[0].equals("sct-concept-list"))
            src = s1 + getSnomedCTConceptList() + s3;
        else if (com[0].equals("txheader0"))
            src = s1 + (level > 0 ? "" : txHeader(name, com.length > 1 ? com[1] : null)) + s3;
        else if (com[0].equals("fmtheader"))
            src = s1 + fmtHeader(name, com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("cmpheader"))
            src = s1 + cmpHeader(name, com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("dictheader"))
            src = s1 + dictHeader(((Bundle) resource).getId().toLowerCase(), com.length > 1 ? com[1] : "") + s3;
        else // src = s1+atomHeader(name, com.length > 1 ? com[1] : null)+s3;
        if (com[0].equals("codelist"))
            src = s1 + codelist((CodeSystem) resource, com.length > 1 ? com[1] : null, false, true, file) + s3;
        else if (com[0].equals("codelist-nh"))
            src = s1 + codelist((CodeSystem) resource, com.length > 1 ? com[1] : null, false, false, file) + s3;
        else if (com[0].equals("linkcodelist"))
            src = s1 + codelist((CodeSystem) resource, com.length > 1 ? com[1] : null, true, false, file) + s3;
        else if (com[0].equals("toc"))
            src = s1 + generateToc() + s3;
        else if (com[0].equals("codetoc"))
            src = s1 + codetoc(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("resheader")) {
            if (resource != null && resource instanceof StructureDefinition)
                src = s1 + resHeader(((StructureDefinition) resource).getId().toLowerCase(), ((StructureDefinition) resource).getId(), com.length > 1 ? com[1] : null) + s3;
            else if (rd != null) {
                src = s1 + resHeader(rd.getName().toLowerCase(), rd.getName(), com.length > 1 ? com[1] : null) + s3;
            } else
                src = s1 + s3;
        } else if (com[0].equals("aresheader"))
            src = s1 + abstractResHeader("document", "Document", com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("onthispage"))
            src = s1 + onThisPage(s2.substring(com[0].length() + 1)) + s3;
        else if (com[0].equals("maponthispage"))
            src = s1 + mapOnThisPage(null) + s3;
        else if (com[0].equals("res-category")) {
            even = false;
            src = s1 + resCategory(s2.substring(com[0].length() + 1)) + s3;
        } else if (com[0].equals("res-item")) {
            even = !even;
            src = s1 + resItem(com[1], even) + s3;
        } else if (com[0].equals("resdesc")) {
            src = s1 + resDesc(com[1]) + s3;
        } else if (com[0].equals("rescat")) {
            src = s1 + resCat(com.length == 1 ? null : s2.substring(7)) + s3;
        } else if (com[0].equals("svg"))
            src = s1 + svgs.get(com[1]) + s3;
        else if (com[0].equals("diagram"))
            src = s1 + new SvgGenerator(this, genlevel(level), null, false, file.contains("datatypes"), version).generate(folders.srcDir + com[1], com[2]) + s3;
        else if (com[0].equals("file")) {
            if (new File(folders.templateDir + com[1] + ".html").exists()) {
                src = s1 + TextFile.fileToString(folders.templateDir + com[1] + ".html") + s3;
            } else {
                src = s1 + TextFile.fileToString(folders.srcDir + com[1] + ".html") + s3;
            }
        } else if (com[0].equals("v2xref"))
            src = s1 + xreferencesForV2(name, com[1]) + s3;
        else if (com[0].equals("vs-warning"))
            src = s1 + vsWarning((ValueSet) resource) + s3;
        else if (com[0].equals("res-status-special"))
            src = s1 + vsSpecialStatus((DomainResource) resource) + s3;
        else if (com[0].equals("conceptmaplistv2"))
            src = s1 + conceptmaplist("http://terminology.hl7.org/ValueSet/v2-" + (name.contains("|") ? name.substring(0, name.indexOf("|")) : name), com[1]) + s3;
        else if (com[0].equals("conceptmaplistv3"))
            src = s1 + conceptmaplist("http://terminology.hl7.org/ValueSet/v3-" + (name.contains("|") ? name.substring(0, name.indexOf("|")) : name), com[1]) + s3;
        else if (com[0].equals("conceptmaplistvs")) {
            ValueSet vs = (ValueSet) resource;
            String ref;
            if (vs == null) {
                ref = "http://hl7.org/fhir/ValueSet/" + Utilities.fileTitle(file);
            } else {
                ref = vs.getUrl();
            }
            src = s1 + conceptmaplist(ref, com[1]) + s3;
        } else if (com[0].equals("settitle")) {
            workingTitle = s2.substring(9).replace("{", "<%").replace("}", "%>");
            src = s1 + s3;
        } else if (com[0].equals("igregistries")) {
            src = s1 + igRegistryList(com[1], com[2]) + s3;
        } else if (com[0].equals("dtmappings")) {
            src = s1 + genDataTypeMappings(com[1]) + s3;
        } else if (com[0].equals("dtusage")) {
            src = s1 + genDataTypeUsage(com[1]) + s3;
        } else if (com[0].equals("v3xref")) {
            src = s1 + xreferencesForV3(name) + s3;
        } else if (com[0].equals("setlevel")) {
            level = Integer.parseInt(com[1]);
            src = s1 + s3;
        } else if (com[0].equals("w5")) {
            src = s1 + genW5("true".equals(com[1])) + s3;
        } else if (com[0].equals("res-ref-list")) {
            src = s1 + genResRefList(com[1]) + s3;
        } else if (com[0].equals("sclist")) {
            src = s1 + genScList(com[1]) + s3;
        } else if (com[0].equals("xcm")) {
            src = s1 + getXcm(com[1]) + s3;
        } else if (com[0].equals("xcmchk")) {
            src = s1 + getXcmChk(com[1]) + s3;
        } else if (com[0].equals("sstatus")) {
            if (com.length == 1) {
                StandardsStatus ss = ToolingExtensions.getStandardsStatus((DomainResource) resource);
                if (ss == null)
                    ss = StandardsStatus.INFORMATIVE;
                if (ss == StandardsStatus.NORMATIVE && ToolingExtensions.hasExtension((DomainResource) resource, ToolingExtensions.EXT_NORMATIVE_VERSION))
                    src = s1 + "<a href=\"" + genlevel(level) + "versions.html#std-process\">" + ss.toDisplay() + "</a> (from v" + ToolingExtensions.readStringExtension((DomainResource) resource, ToolingExtensions.EXT_NORMATIVE_VERSION) + ")" + s3;
                else
                    src = s1 + "<a href=\"" + genlevel(level) + "versions.html#std-process\">" + ss.toDisplay() + "</a>" + s3;
            } else
                src = s1 + getStandardsStatus(com[1]) + s3;
        } else if (com[0].equals("wg")) {
            src = s1 + getWgLink(file, wg == null && com.length > 1 ? wg(com[1]) : wg) + s3;
        } else if (com[0].equals("wgt")) {
            src = s1 + getWgTitle(wg == null && com.length > 1 ? wg(com[1]) : wg) + s3;
        } else if (com[0].equals("ig.registry")) {
            src = s1 + buildIgRegistry(ig, com[1]) + s3;
        } else if (com[0].equals("search-link")) {
            src = s1 + searchLink(s2) + s3;
        } else if (com[0].equals("search-footer")) {
            src = s1 + searchFooter(level) + s3;
        } else if (com[0].equals("search-header")) {
            src = s1 + searchHeader(level) + s3;
        } else if (com[0].equals("profileheader")) {
            src = s1 + profileHeader(((StructureDefinition) resource).getId().toLowerCase(), com[1], hasExamples((StructureDefinition) resource, ig)) + s3;
        } else if (com[0].equals("resource-table")) {
            src = s1 + genResourceTable(definitions.getResourceByName(com[1]), genlevel(level)) + s3;
        } else if (com[0].equals("dtextras")) {
            src = s1 + produceDataTypeExtras(com[1], false) + s3;
        } else if (com[0].equals("dtextensions")) {
            src = s1 + produceDataTypeExtras(com[1], true) + s3;
        } else if (com[0].equals("tx")) {
            src = s1 + produceDataTypeTx(com[1]) + s3;
        } else if (com[0].equals("extension-diff")) {
            StructureDefinition ed = workerContext.fetchResource(StructureDefinition.class, com[1]);
            src = s1 + generateExtensionTable(ed, "extension-" + com[1], "false", genlevel(level)) + s3;
        } else if (com[0].equals("profile-diff")) {
            ConstraintStructure p = definitions.findProfile(com[1]);
            src = s1 + generateProfileStructureTable(p, true, com[1] + ".html", com[1], genlevel(level)) + s3;
        } else if (com[0].equals("example")) {
            String[] parts = com[1].split("\\/");
            Example e = findExample(parts[0], parts[1]);
            src = s1 + genExample(e, com.length > 2 ? Integer.parseInt(com[2]) : 0, genlevel(level)) + s3;
        } else if (com[0].equals("r3r4transform")) {
            src = s1 + dtR3R4Transform(com[1]) + s3;
        } else if (com[0].equals("fmm-style")) {
            String fmm = resource == null ? "N/A" : ToolingExtensions.readStringExtension((DomainResource) resource, ToolingExtensions.EXT_FMM_LEVEL);
            StandardsStatus ss = ToolingExtensions.getStandardsStatus((DomainResource) resource);
            src = s1 + fmmBarColorStyle(ss, fmm) + s3;
        } else if (com[0].equals("fmm")) {
            String fmm = resource == null || !(resource instanceof CanonicalResource) ? getFmm(com[1], false) : ToolingExtensions.readStringExtension((DomainResource) resource, ToolingExtensions.EXT_FMM_LEVEL);
            StandardsStatus ss = ToolingExtensions.getStandardsStatus((DomainResource) resource);
            if (StandardsStatus.EXTERNAL == ss)
                src = s1 + getFmmFromlevel(genlevel(level), "N/A") + s3;
            else if (StandardsStatus.NORMATIVE == ss)
                src = s1 + getFmmFromlevel(genlevel(level), "<a href=\"" + genlevel(level) + "versions.html#std-process\">N</a>") + s3;
            else
                src = s1 + getFmmFromlevel(genlevel(level), fmm) + s3;
        } else if (com[0].equals("fmmna")) {
            String fmm = "N/A";
            src = s1 + getFmmFromlevel(genlevel(level), fmm) + s3;
        } else if (com[0].equals("mostlynormative")) {
            String p = null;
            String wt = workingTitle;
            if (com.length >= 3) {
                if (!com[2].equals("%check"))
                    p = com[2];
                else if (StandardsStatus.NORMATIVE == ToolingExtensions.getStandardsStatus((DomainResource) resource)) {
                    p = resource.getUserString("ballot.package");
                    wt = ((CanonicalResource) resource).fhirType() + " " + ((CanonicalResource) resource).present();
                }
            }
            src = s1 + (p == null ? "" : getMostlyNormativeNote(genlevel(level), p, com[1], wt, file)) + s3;
        } else if (com[0].equals("mixednormative")) {
            String p = null;
            String wt = workingTitle;
            if (com.length >= 3) {
                if (!com[2].equals("%check"))
                    p = com[2];
                else if (StandardsStatus.NORMATIVE == ToolingExtensions.getStandardsStatus((DomainResource) resource)) {
                    p = resource.getUserString("ballot.package");
                    wt = ((CanonicalResource) resource).fhirType() + " " + ((CanonicalResource) resource).present();
                }
            }
            src = s1 + (p == null ? "" : getMixedNormativeNote(genlevel(level), p, com[1], wt, file)) + s3;
        } else if (com[0].equals("normative")) {
            String p = object instanceof Object ? rd.getNormativePackage() : null;
            String wt = object instanceof Object ? rd.getName() + " Operation " + ((Operation) object).getName() : workingTitle;
            if (com.length >= 3) {
                if (!com[2].equals("%check"))
                    p = com[2];
                else if (StandardsStatus.NORMATIVE == ToolingExtensions.getStandardsStatus((DomainResource) resource)) {
                    p = resource.getUserString("ballot.package");
                    wt = ((CanonicalResource) resource).fhirType() + " " + ((CanonicalResource) resource).present();
                }
            }
            src = s1 + (p == null && com.length != 2 ? "" : getNormativeNote(genlevel(level), p, com[1], wt, file)) + s3;
        } else if (com[0].equals("normative-op")) {
            String p = rd.getNormativePackage();
            String wt = rd.getName() + " Operation " + ((Operation) object).getName();
            StandardsStatus st = ((Operation) object).getStandardsStatus();
            if (st == null)
                st = ToolingExtensions.getStandardsStatus((DomainResource) resource);
            src = s1 + (st == StandardsStatus.NORMATIVE ? getNormativeNote(genlevel(level), p, com[1], wt, file) : "") + s3;
        } else if (com[0].equals("fmmshort")) {
            String fmm = resource == null || !(resource instanceof CanonicalResource) ? getFmm(com[1], true) : ToolingExtensions.readStringExtension((DomainResource) resource, ToolingExtensions.EXT_FMM_LEVEL);
            String npr = resource == null || !(resource instanceof CanonicalResource) ? getNormativePackageRef(com[1]) : "";
            src = s1 + getFmmShortFromlevel(genlevel(level), fmm) + npr + s3;
        } else if (com[0].equals("normative-pages")) {
            src = s1 + getNormativeList(genlevel(level), com[1]) + s3;
        } else if (s2.startsWith("search-additions\r\n")) {
            searchAdditions = s2.substring(16).trim();
            src = s1 + s3;
        } else if (com[0].equals("complinks")) {
            src = s1 + (rd == null ? "" : getCompLinks(rd, com.length > 1 ? com[1] : null)) + s3;
        } else if (com[0].equals("diff")) {
            String p = com[1];
            String pd = p.contains("#") ? p.substring(0, p.indexOf("#")) : p;
            String t = s2.substring(com[0].length() + com[1].length() + 2);
            src = s1 + "<a href=\"" + p + "\">" + t + "</a> <a href=\"http://services.w3.org/htmldiff?doc1=http%3A%2F%2Fhl7.org%2Ffhir%2F2018May%2F" + pd + "&amp;doc2=http%3A%2F%2Fbuild.fhir.org%2F" + pd + "\" no-external=\"true\" style=\"border: 1px solid lightgrey; white-space: nowrap; background-color: #EDFDFE; padding: 2px 2px 2px 2px\">&Delta;B</a>" + s3;
        } else if (com[0].equals("diffx")) {
            String p1 = com[1];
            String pd = p1.contains("#") ? p1.substring(0, p1.indexOf("#")) : p1;
            String p2 = com[2];
            String t = s2.substring(com[0].length() + com[1].length() + 2);
            src = s1 + "<a href=\"" + p1 + "\">" + t + "</a> <a href=\"http://services.w3.org/htmldiff?doc1=http%3A%2F%2Fhl7.org%2Ffhir%2F2018May%2F" + p2 + "&amp;doc2=http%3A%2F%2Fbuild.fhir.org%2F" + pd + "\" no-external=\"true\" style=\"border: 1px solid lightgrey; white-space: nowrap; background-color: #EDFDFE; padding: 2px 2px 2px 2px\">&Delta;B</a>" + s3;
        } else if (com[0].equals("StandardsStatus")) {
            src = s1 + getStandardsStatusNote(genlevel(level), com[1], com[2], com.length == 4 ? com[3] : null) + s3;
        } else if (com[0].equals("circular-references")) {
            src = s1 + buildCircularReferenceList(com[1].equals("null") ? null : Boolean.valueOf(com[1])) + s3;
        } else if (com[0].equals("shortparameterlist")) {
            src = s1 + buildShortParameterList(com[1]) + s3;
        } else if (com[0].equals("op-example-link")) {
            src = s1 + buildOpReferenceList(com[1]) + s3;
        } else if (com[0].equals("pattern-impls")) {
            src = s1 + buildPatternList(com[1]) + s3;
        } else if (com[0].equals("diff-analysis")) {
            if ("*".equals(com[1])) {
                updateDiffEngineDefinitions();
                src = s1 + diffEngine.getDiffAsHtml(this) + s3;
            } else {
                StructureDefinition sd = workerContext.fetchTypeDefinition(com[1]);
                if (sd == null)
                    throw new Exception("diff-analysis not found: " + com[1]);
                src = s1 + diffEngine.getDiffAsHtml(this, sd) + s3;
            }
        } else if (com.length != 1)
            throw new Exception("Instruction <%" + s2 + "%> not understood parsing page " + file);
        else if (com[0].equals("pageheader"))
            src = s1 + pageHeader(name.toUpperCase().substring(0, 1) + name.substring(1)) + s3;
        else if (com[0].equals("newheader"))
            src = s1 + TextFile.fileToString(folders.srcDir + "newheader.html") + s3;
        else if (com[0].equals("newheader1"))
            src = s1 + TextFile.fileToString(folders.srcDir + "newheader1.html") + s3;
        else if (com[0].equals("footer"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer.html") + s3;
        else if (com[0].equals("newfooter"))
            src = s1 + TextFile.fileToString(folders.srcDir + "newfooter.html") + s3;
        else if (com[0].equals("footer1"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer1.html") + s3;
        else if (com[0].equals("footer2"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer2.html") + s3;
        else if (com[0].equals("footer3"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer3.html") + s3;
        else if (com[0].equals("title"))
            src = s1 + (workingTitle == null ? Utilities.escapeXml(name.toUpperCase().substring(0, 1) + name.substring(1)) : workingTitle) + s3;
        else if (com[0].equals("xtitle"))
            src = s1 + Utilities.escapeXml(name.toUpperCase().substring(0, 1) + name.substring(1)) + s3;
        else if (com[0].equals("name"))
            src = s1 + name + s3;
        else if (com[0].equals("name.tail"))
            src = s1 + fileTail(name) + s3;
        else if (com[0].equals("piperesources"))
            src = s1 + pipeResources() + s3;
        else if (com[0].equals("enteredInErrorTable"))
            src = s1 + enteredInErrorTable() + s3;
        else if (com[0].equals("canonicalname"))
            src = s1 + makeCanonical(name) + s3;
        else if (com[0].equals("prettyname"))
            src = s1 + makePretty(name) + s3;
        else if (com[0].equals("jsonldname"))
            src = s1 + makeJsonld(name) + s3;
        else if (com[0].equals("version"))
            src = s1 + version + s3;
        else if (com[0].equals("gendate"))
            src = s1 + Config.DATE_FORMAT().format(new Date()) + s3;
        else if (com[0].equals("maindiv"))
            src = s1 + "<div class=\"content\">" + s3;
        else if (com[0].equals("/maindiv"))
            src = s1 + "</div>" + s3;
        else if (com[0].equals("mappings-table"))
            src = s1 + genMappingsTable() + s3;
        else if (com[0].equals("id"))
            src = s1 + (name.contains("|") ? name.substring(0, name.indexOf("|")) : name) + s3;
        else if (com[0].equals("ver"))
            src = s1 + (name.contains("|") ? name.substring(name.indexOf("|") + 1) : "??") + s3;
        else if (com[0].equals("events"))
            src = s1 + getEventsTable(pagePath) + s3;
        else if (com[0].equals("resourcecodes"))
            src = s1 + genResCodes() + s3;
        else if (com[0].equals("datatypecodes"))
            src = s1 + genDTCodes() + s3;
        else if (com[0].equals("allparams"))
            src = s1 + allParamlist() + s3;
        else // src = s1 + genBindingsTable() + s3;
        if (com[0].equals("codeslist"))
            src = s1 + genCodeSystemsTable() + s3;
        else if (com[0].equals("valuesetslist"))
            src = s1 + genValueSetsTable(ig) + s3;
        else if (com[0].equals("namespacelist"))
            src = s1 + genNSList() + s3;
        else if (com[0].equals("extensionslist"))
            src = s1 + genExtensionsTable() + s3;
        else if (com[0].equals("igvaluesetslist"))
            src = s1 + genIGValueSetsTable() + s3;
        else if (com[0].equals("conceptmapslist"))
            src = s1 + genConceptMapsTable() + s3;
        else // src = s1 + genBindingTable(false) + s3;
        if (com[0].equals("resimplall"))
            src = s1 + genResImplList() + s3;
        else if (com[0].equals("txurl"))
            src = s1 + "http://hl7.org/fhir/" + Utilities.fileTitle(file) + s3;
        else if (com[0].equals("vstxurl"))
            src = s1 + "http://hl7.org/fhir/ValueSet/" + Utilities.fileTitle(file) + s3;
        else if (com[0].equals("csurl")) {
            if (resource instanceof CodeSystem)
                src = s1 + ((CodeSystem) resource).getUrl() + s3;
            else {
                CodeSystem cs = (CodeSystem) ((ValueSet) resource).getUserData("cs");
                src = s1 + (cs == null ? "" : cs.getUrl()) + s3;
            }
        } else if (com[0].equals("vsurl")) {
            if (resource == null)
                src = s1 + s3;
            else if (resource instanceof CodeSystem)
                src = s1 + ((CodeSystem) resource).getUrl() + s3;
            else
                src = s1 + ((ValueSet) resource).getUrl() + s3;
        } else if (com[0].equals("txdef"))
            src = s1 + generateCodeDefinition(Utilities.fileTitle(file)) + s3;
        else if (com[0].equals("vsdef"))
            if (resource instanceof CodeSystem)
                src = s1 + processMarkdown("vsdef", ((CodeSystem) resource).getDescription(), genlevel(level)) + s3;
            else
                src = s1 + processMarkdown("vsdef", ((ValueSet) resource).getDescription(), genlevel(level)) + s3;
        else if (com[0].equals("txoid"))
            src = s1 + generateOID((CodeSystem) resource) + s3;
        else if (com[0].equals("vsoid"))
            src = s1 + generateOID((ValueSet) resource) + s3;
        else if (com[0].equals("txname"))
            src = s1 + Utilities.fileTitle(file) + s3;
        else if (com[0].equals("vsname"))
            if (resource instanceof CodeSystem)
                src = s1 + ((CodeSystem) resource).present() + s3;
            else
                src = s1 + ((ValueSet) resource).present() + s3;
        else if (com[0].equals("vsnamed"))
            if (resource instanceof CodeSystem)
                src = s1 + ((CodeSystem) resource).getName() + s3;
            else
                src = s1 + ((ValueSet) resource).getName() + s3;
        else if (com[0].equals("vstitle"))
            if (resource instanceof CodeSystem)
                src = s1 + checkTitle(((CodeSystem) resource).getTitle()) + s3;
            else
                src = s1 + checkTitle(((ValueSet) resource).getTitle()) + s3;
        else if (com[0].equals("vsver"))
            if (resource instanceof CodeSystem)
                src = s1 + ((CodeSystem) resource).getVersion() + s3;
            else
                src = s1 + ((ValueSet) resource).getVersion() + s3;
        else if (com[0].equals("vsref")) {
            src = s1 + Utilities.fileTitle((String) resource.getUserData("filename")) + s3;
        } else if (com[0].equals("vsdesc"))
            src = s1 + (resource != null ? new XhtmlComposer(XhtmlComposer.HTML).compose(((ValueSet) resource).getText().getDiv()) : generateVSDesc(Utilities.fileTitle(file))) + s3;
        else if (com[0].equals("txusage"))
            src = s1 + generateValueSetUsage((ValueSet) resource, genlevel(level), true) + s3;
        else if (com[0].equals("vsusage"))
            src = s1 + generateValueSetUsage((ValueSet) resource, genlevel(level), true) + s3;
        else if (com[0].equals("csusage"))
            src = s1 + generateCSUsage((CodeSystem) resource, genlevel(level)) + s3;
        else if (com[0].equals("vssummary"))
            src = s1 + "todo" + s3;
        else if (com[0].equals("compartmentlist"))
            src = s1 + compartmentlist() + s3;
        else if (com[0].equals("qa"))
            src = s1 + qa.report(this, validationErrors) + s3;
        else if (com[0].equals("comp-title"))
            src = s1 + compTitle(name) + s3;
        else if (com[0].equals("comp-name"))
            src = s1 + compName(name) + s3;
        else if (com[0].equals("comp-desc"))
            src = s1 + compDesc(name) + s3;
        else if (com[0].equals("comp-uri"))
            src = s1 + compUri(name) + s3;
        else if (com[0].equals("comp-identity"))
            src = s1 + compIdentity(name) + s3;
        else if (com[0].equals("comp-membership"))
            src = s1 + compMembership(name) + s3;
        else if (com[0].equals("comp-resources"))
            src = s1 + compResourceMap(name) + s3;
        else if (com[0].equals("breadcrumb"))
            src = s1 + breadCrumbManager.make(name) + s3;
        else if (com[0].equals("navlist"))
            src = s1 + breadCrumbManager.navlist(name, genlevel(level)) + s3;
        else if (com[0].equals("breadcrumblist")) {
            if (object instanceof Operation)
                src = s1 + ((ig == null || ig.isCore()) ? breadCrumbManager.makelist(rd.getName().toLowerCase(), type, genlevel(level), crumbTitle) : ig.makeList(name, type, genlevel(level), crumbTitle)) + s3;
            else
                src = s1 + ((ig == null || ig.isCore()) ? breadCrumbManager.makelist(name, type, genlevel(level), crumbTitle) : ig.makeList(name, type, genlevel(level), crumbTitle)) + s3;
        } else if (com[0].equals("year"))
            src = s1 + new SimpleDateFormat("yyyy").format(new Date()) + s3;
        else if (com[0].equals("buildId"))
            src = s1 + buildId + s3;
        else if (com[0].equals("pub-type"))
            src = s1 + publicationType + s3;
        else if (com[0].equals("pub-notice"))
            src = s1 + publicationNotice + s3;
        else if (com[0].equals("vssource"))
            if (resource instanceof CodeSystem)
                src = s1 + csSource((CodeSystem) resource) + s3;
            else
                src = s1 + vsSource((ValueSet) resource) + s3;
        else if (com[0].equals("vsxref"))
            src = s1 + xreferencesForFhir(name) + s3;
        else if (com[0].equals("vsexpansion"))
            src = s1 + expandValueSet(Utilities.fileTitle(file), resource == null ? null : ((ValueSet) resource), genlevel(level)) + s3;
        else if (com[0].equals("vscld"))
            src = s1 + vsCLD(Utilities.fileTitle(file), resource == null ? null : ((ValueSet) resource), genlevel(level)) + s3;
        else if (com[0].equals("cs-content"))
            src = s1 + csContent(Utilities.fileTitle(file), ((CodeSystem) resource), genlevel(level)) + s3;
        else if (com[0].equals("vsexpansionig"))
            src = s1 + expandValueSetIG((ValueSet) resource, true) + s3;
        else if (com[0].equals("level"))
            src = s1 + genlevel(level) + s3;
        else if (com[0].equals("archive"))
            src = s1 + makeArchives() + s3;
        else if (com[0].equals("pagepath"))
            src = s1 + pagePath + s3;
        else if (com[0].equals("rellink")) {
            if (!pagePath.contains(".html"))
                throw new Error("Invalid link: " + pagePath + " at " + workingTitle);
            src = s1 + Utilities.URLEncode(pagePath) + s3;
        } else if (com[0].equals("baseURL"))
            src = s1 + Utilities.URLEncode(baseURL) + s3;
        else if (com[0].equals("baseURLn"))
            src = s1 + Utilities.appendForwardSlash(baseURL) + s3;
        else if (com[0].equals("profilelist"))
            src = s1 + genProfilelist() + s3;
        else if (com[0].equals("igprofileslist"))
            src = s1 + genIGProfilelist() + s3;
        else if (com[0].equals("operationslist"))
            src = s1 + genOperationList() + s3;
        else if (com[0].equals("example.profile.link"))
            src = s1 + genExampleProfileLink(resource) + s3;
        else if (com[0].equals("id_regex"))
            src = s1 + FormatUtilities.ID_REGEX + s3;
        else if (com[0].equals("resourcecount"))
            src = s1 + Integer.toString(definitions.getResources().size()) + s3;
        else if (others != null && others.containsKey(com[0]))
            src = s1 + others.get(com[0]) + s3;
        else if (com[0].equals("status-codes"))
            src = s1 + genStatusCodes() + s3;
        else if (com[0].equals("dictionary.name")) {
            String n = name.contains(File.separator) ? name.substring(name.lastIndexOf(File.separator) + 1) : name;
            src = s1 + definitions.getDictionaries().get(n).getName() + s3;
        // } else if (com[0].equals("dictionary.view"))
        // src = s1 + ResourceUtilities.representDataElementCollection(this.workerContext, (Bundle) resource, true, "hspc-qnlab-de") + s3;
        } else if (com[0].equals("search-param-pack") && resource instanceof SearchParameter)
            src = s1 + ((SearchParameter) resource).getUserData("pack") + s3;
        else if (com[0].equals("search-param-name") && resource instanceof SearchParameter)
            src = s1 + ((SearchParameter) resource).getName() + s3;
        else if (com[0].equals("search-param-url") && resource instanceof SearchParameter)
            src = s1 + ((SearchParameter) resource).getUrl() + s3;
        else if (com[0].equals("search-param-type") && resource instanceof SearchParameter)
            src = s1 + ((SearchParameter) resource).getType().toCode() + s3;
        else if (com[0].equals("search-param-definition") && resource instanceof SearchParameter)
            src = s1 + ((SearchParameter) resource).getDescription() + s3;
        else if (com[0].equals("search-param-paths") && resource instanceof SearchParameter)
            src = s1 + (((SearchParameter) resource).hasXpath() ? ((SearchParameter) resource).getXpath() : "") + s3;
        else if (com[0].equals("search-param-targets") && resource instanceof SearchParameter) {
            CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
            for (CodeType t : ((SearchParameter) resource).getTarget()) b.append(t.asStringValue());
            src = s1 + b.toString() + s3;
        } else if (com[0].startsWith("!"))
            src = s1 + s3;
        else if (com[0].equals("txsummary"))
            if (resource instanceof CodeSystem)
                src = s1 + txsummary((CodeSystem) resource, genlevel(level)) + s3;
            else
                src = s1 + txsummary((ValueSet) resource, genlevel(level)) + s3;
        else if (com[0].equals("identifierlist"))
            src = s1 + genIdentifierList() + s3;
        else if (com[0].equals("allsearchparams"))
            src = s1 + genAllSearchParams() + s3;
        else if (com[0].equals("internalsystemlist"))
            src = s1 + genCSList() + s3;
        else if (com[0].equals("internalsystemlistx"))
            src = s1 + genCSListX() + s3;
        else if (com[0].equals("example-usage"))
            src = s1 + s3;
        else if (com[0].equals("ig.title"))
            src = s1 + ig.getName() + s3;
        else if (com[0].equals("ig.wglink"))
            src = s1 + igLink(ig) + s3;
        else if (com[0].equals("ig.wgt"))
            src = s1 + ig.getCommittee() + s3;
        else if (com[0].equals("ig.fmm"))
            src = s1 + getFmmFromlevel(genlevel(level), ig.getFmm()) + s3;
        else if (com[0].equals("ig.ballot"))
            src = s1 + ig.getBallot() + s3;
        else if (com[0].equals("operations")) {
            Profile p = (Profile) object;
            src = s1 + genOperations(p.getOperations(), p.getTitle(), p.getId(), false, null, "../", "") + s3;
        } else if (com[0].equals("operations-summary"))
            src = s1 + genOperationsSummary(((Profile) object).getOperations(), rd) + s3;
        else if (com[0].equals("ig.opcount"))
            src = s1 + genOpCount(((Profile) object).getOperations()) + s3;
        else if (com[0].equals("ig-toc"))
            src = s1 + genIgToc(ig) + s3;
        else if (com[0].equals("fhir-path"))
            src = s1 + "../" + s3;
        else if (com[0].equals("vscommittee"))
            src = s1 + vscommittee(resource) + s3;
        else if (com[0].equals("modifier-list"))
            src = s1 + genModifierList() + s3;
        else if (com[0].equals("missing-element-list"))
            src = s1 + genMeaningWhenMissingList() + s3;
        else if (com[0].equals("wgreport"))
            src = s1 + genWGReport() + s3;
        else if (com[0].equals("r3maps-summary"))
            src = s1 + genR3MapsSummary() + s3;
        else if (com[0].equals("wg")) {
            src = s1 + (wg == null || !definitions.getWorkgroups().containsKey(wg) ? "(No assigned work group) (" + wg + " (1))" : "<a _target=\"blank\" href=\"" + definitions.getWorkgroups().get(wg).getUrl() + "\">" + definitions.getWorkgroups().get(wg).getName() + "</a> Work Group") + s3;
        } else if (com[0].equals("profile-context"))
            src = s1 + getProfileContext((CanonicalResource) resource, genlevel(level)) + s3;
        else if (com[0].equals("res-list-maturity"))
            src = s1 + buildResListByMaturity() + s3;
        else if (com[0].equals("res-list-security"))
            src = s1 + buildResListBySecurity() + s3;
        else if (com[0].equals("res-list-fmg"))
            src = s1 + buildResListByFMG() + s3;
        else if (com[0].equals("res-list-ballot"))
            src = s1 + buildResListByBallot() + s3;
        else if (com[0].equals("res-list-committee"))
            src = s1 + buildResListByCommittee() + s3;
        else if (com[0].equals("wglist"))
            src = s1 + buildCommitteeList() + s3;
        else if (com[0].equals("opName"))
            src = s1 + ((Operation) object).getName() + s3;
        else if (com[0].equals("rName"))
            src = s1 + rd.getName() + s3;
        else if (com[0].equals("operation-summary"))
            src = s1 + ((Operation) object).getName() + " summary" + s3;
        else if (com[0].equals("extension-type-list"))
            src = s1 + genExtensionTypeList() + s3;
        else if (com[0].equals("best-practice-list"))
            src = s1 + genBestPracticeList() + s3;
        else if (com[0].equals("wildcard-type-list"))
            src = s1 + genWildcardTypeList() + s3;
        else if (com[0].startsWith("GF#"))
            src = s1 + "<a href=\"https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&amp;tracker_item_id=" + com[0].substring(3) + "\">" + com[0] + "</a>" + s3;
        else if (com[0].startsWith("GFT#"))
            src = s1 + "<a href=\"https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&amp;tracker_item_id=" + com[0].substring(3) + "\">Task</a>" + s3;
        else if (com[0].equals("operation")) {
            Operation op = (Operation) object;
            src = s1 + genOperation(op, rd.getName(), rd.getName().toLowerCase(), false, rd.getStatus(), genlevel(level), rd.getNormativePackage()) + s3;
        } else if (com[0].equals("past-narrative-link")) {
            if (object == null || !(object instanceof Boolean))
                src = s1 + s3;
            else
                src = s1 + "<p><a href=\"#DomainResource.text.div-end\">Jump past Narrative</a></p>" + s3;
        } else if (others != null && others.containsKey(s2))
            src = s1 + others.get(s2) + s3;
        else if (com[0].equals("canonical-resources"))
            src = s1 + listCanonicalResources() + s3;
        else if (com[0].equals("metadata-resources"))
            src = s1 + listCanonicalResources() + s3;
        else if (com[0].equals("special-search-parameters")) {
            src = s1 + listSpecialParameters() + s3;
        } else if (com[0].equals("diff-links-all")) {
            src = s1 + genDiffLinks() + s3;
        } else if (com[0].equals("res-type-count")) {
            src = s1 + definitions.getResources().size() + s3;
        } else if (com[0].equals("patterns-analysis")) {
            src = s1 + patternFinder.generateReport() + s3;
        } else if (macros.containsKey(com[0])) {
            src = s1 + macros.get(com[0]) + s3;
        } else
            throw new Exception("Instruction <%" + s2 + "%> not understood parsing page " + file);
    }
    return src;
}
Also used : DomainResource(org.hl7.fhir.r5.model.DomainResource) Operation(org.hl7.fhir.definitions.model.Operation) Profile(org.hl7.fhir.definitions.model.Profile) StructureDefinition(org.hl7.fhir.r5.model.StructureDefinition) Example(org.hl7.fhir.definitions.model.Example) OperationExample(org.hl7.fhir.definitions.model.Operation.OperationExample) XhtmlComposer(org.hl7.fhir.utilities.xhtml.XhtmlComposer) ConstraintStructure(org.hl7.fhir.definitions.model.ConstraintStructure) SearchParameter(org.hl7.fhir.r5.model.SearchParameter) ValueSet(org.hl7.fhir.r5.model.ValueSet) StandardsStatus(org.hl7.fhir.utilities.StandardsStatus) FHIRFormatError(org.hl7.fhir.exceptions.FHIRFormatError) TransformerFactoryConfigurationError(javax.xml.transform.TransformerFactoryConfigurationError) CommaSeparatedStringBuilder(org.hl7.fhir.utilities.CommaSeparatedStringBuilder) CodeSystem(org.hl7.fhir.r5.model.CodeSystem) ContactPoint(org.hl7.fhir.r5.model.ContactPoint) UcumException(org.fhir.ucum.UcumException) TransformerException(javax.xml.transform.TransformerException) TransformerConfigurationException(javax.xml.transform.TransformerConfigurationException) IOException(java.io.IOException) FHIRException(org.hl7.fhir.exceptions.FHIRException) URISyntaxException(java.net.URISyntaxException) PathEngineException(org.hl7.fhir.exceptions.PathEngineException) DefinitionException(org.hl7.fhir.exceptions.DefinitionException) FileNotFoundException(java.io.FileNotFoundException) NotImplementedException(org.apache.commons.lang3.NotImplementedException) Date(java.util.Date) SvgGenerator(org.hl7.fhir.definitions.generators.specification.SvgGenerator) CodeType(org.hl7.fhir.r5.model.CodeType) JsonObject(com.google.gson.JsonObject) IniFile(org.hl7.fhir.utilities.IniFile) File(java.io.File) CSFile(org.hl7.fhir.utilities.CSFile) TextFile(org.hl7.fhir.utilities.TextFile) CanonicalResource(org.hl7.fhir.r5.model.CanonicalResource) SimpleDateFormat(java.text.SimpleDateFormat)

Example 4 with SearchParameter

use of org.hl7.fhir.r5.model.SearchParameter in project kindling by HL7.

the class ExampleInspector method fetch.

@Override
public Element fetch(IResourceValidator validator, Object appContext, String url) throws IOException, FHIRException {
    String[] parts = url.split("\\/");
    if (parts.length == 2 && definitions.hasResource(parts[0])) {
        ResourceDefn r = definitions.getResourceByName(parts[0]);
        for (Example e : r.getExamples()) {
            if (e.getElement() == null && e.hasXml()) {
                e.setElement(new org.hl7.fhir.r5.elementmodel.XmlParser(context).parse(e.getXml()));
                if (e.getElement().getProperty().getStructure().getBaseDefinition().contains("MetadataResource")) {
                    String urle = e.getElement().getChildValue("url");
                    String v = e.getElement().getChildValue("url");
                    if (urle != null && urle.startsWith("http://hl7.org/fhir") && !version.toCode().equals(v)) {
                        e.getElement().setChildValue("version", version.toCode());
                    }
                }
            }
            if (e.getElement() != null) {
                if (e.getElement().fhirType().equals("Bundle")) {
                    for (Base b : e.getElement().listChildrenByName("entry")) {
                        if (b.getChildByName("resource").hasValues()) {
                            Element res = (Element) b.getChildByName("resource").getValues().get(0);
                            if (res.fhirType().equals(parts[0]) && parts[1].equals(res.getChildValue("id"))) {
                                return res;
                            }
                        }
                    }
                } else if (e.getElement().fhirType().equals(parts[0]) && e.getId().equals(parts[1])) {
                    return e.getElement();
                }
            }
        }
        try {
            if (parts[0].equals("StructureDefinition"))
                return new ObjectConverter(context).convert(context.fetchResourceWithException(StructureDefinition.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
            if (parts[0].equals("OperationDefinition"))
                return new ObjectConverter(context).convert(context.fetchResourceWithException(OperationDefinition.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
            if (parts[0].equals("SearchParameter"))
                return new ObjectConverter(context).convert(context.fetchResourceWithException(SearchParameter.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
            if (parts[0].equals("ValueSet"))
                return new ObjectConverter(context).convert(context.fetchResourceWithException(ValueSet.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
            if (parts[0].equals("CodeSystem"))
                return new ObjectConverter(context).convert(context.fetchResourceWithException(CodeSystem.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
        } catch (Exception e) {
            return null;
        }
        return null;
    } else
        return null;
}
Also used : XmlParser(org.hl7.fhir.r5.formats.XmlParser) ObjectConverter(org.hl7.fhir.r5.elementmodel.ObjectConverter) Example(org.hl7.fhir.definitions.model.Example) Element(org.hl7.fhir.r5.elementmodel.Element) ResourceDefn(org.hl7.fhir.definitions.model.ResourceDefn) Base(org.hl7.fhir.r5.model.Base) URISyntaxException(java.net.URISyntaxException) FileNotFoundException(java.io.FileNotFoundException) SAXException(org.xml.sax.SAXException) NotImplementedException(org.apache.commons.lang3.NotImplementedException) DefinitionException(org.hl7.fhir.exceptions.DefinitionException) PathEngineException(org.hl7.fhir.exceptions.PathEngineException) ValidationException(org.everit.json.schema.ValidationException) MalformedURLException(java.net.MalformedURLException) JsonSyntaxException(com.google.gson.JsonSyntaxException) IOException(java.io.IOException) ParserConfigurationException(javax.xml.parsers.ParserConfigurationException) FHIRException(org.hl7.fhir.exceptions.FHIRException)

Example 5 with SearchParameter

use of org.hl7.fhir.r5.model.SearchParameter in project kindling by HL7.

the class OldSpreadsheetParser method readSearchParams.

/* for profiles that have a "search" tab not tied to a structure */
private void readSearchParams(Profile pack, Sheet sheet, String prefix) throws Exception {
    for (int row = 0; row < sheet.rows.size(); row++) {
        if (!sheet.hasColumn(row, "Name"))
            throw new Exception("Search Param has no name " + getLocation(row));
        String n = sheet.getColumn(row, "Name");
        if (!n.startsWith("!")) {
            SearchParameter sp = new SearchParameter();
            if (!sheet.hasColumn(row, "Type"))
                throw new Exception("Search Param " + pack.getTitle() + "/" + n + " has no type " + getLocation(row));
            if (n.endsWith("-before") || n.endsWith("-after"))
                throw new Exception("Search Param " + pack.getTitle() + "/" + n + " includes relative time " + getLocation(row));
            // if (!n.toLowerCase().equals(n))
            // throw new Exception("Search Param "+pack.getTitle()+"/"+n+" must be all lowercase "+ getLocation(row));
            sp.setVersion(version.toCode());
            sp.setName(n);
            sp.setCode(n);
            if (pack.getProfiles().size() > 0 && pack.getProfiles().get(0).getResource() != null) {
                sp.setStatus(pack.getProfiles().get(0).getResource().getStatus());
                sp.setExperimental(pack.getProfiles().get(0).getResource().getExperimental());
            } else {
                // we just guess
                sp.setStatus(PublicationStatus.DRAFT);
                sp.setExperimental(true);
            }
            String d = sheet.getColumn(row, "Description");
            sp.setType(SearchParamType.fromCode(sheet.getColumn(row, "Type")));
            List<String> pn = new ArrayList<String>();
            String path = sheet.getColumn(row, "Path");
            if (Utilities.noString(path))
                throw new Exception("Search Param " + pack.getTitle() + "/" + n + " has no path");
            if (!path.contains(".") && !path.startsWith("#"))
                throw new Exception("Search Param " + pack.getTitle() + "/" + n + " has an invalid path: " + path);
            ResourceDefn root2 = null;
            if (!path.startsWith("#")) {
                path = path.substring(0, path.indexOf('.'));
                if (!pkp.isResource(path))
                    throw new Exception("Ilegal Search Parameter path " + sheet.getColumn(row, "Path"));
                sp.addBase(path);
                sp.setId(pack.getId() + "-" + path + "-" + sp.getName());
                if (definitions != null) {
                    // igtodo (and below)
                    root2 = definitions.getResourceByName(path);
                    if (root2 == null)
                        throw new Exception("Search Param " + pack.getTitle() + "/" + n + " has an invalid path (resource not found)");
                    if (!pkp.isResource(root2.getName()))
                        throw new Exception("Ilegal Search Parameter path " + sheet.getColumn(row, "Path"));
                    sp.getBase().clear();
                    sp.addBase(root2.getName());
                    sp.setId(pack.getId() + "-" + (root2 == null ? "all" : root2.getName()) + "-" + sp.getName());
                }
            }
            if (!Utilities.noString(sheet.getColumn(row, "Target Types")))
                throw new Exception("Search Param " + pack.getTitle() + "/" + n + " has manually specified targets (not allowed)");
            if (root2 != null && root2.getSearchParams().containsKey(n))
                throw new Exception("Search Param " + root2.getName() + "/" + n + ": duplicate name " + getLocation(row));
            if (sp.getType() == SearchParamType.COMPOSITE) {
                throw new Exception("not supported");
            } else {
                String[] pl = sheet.getColumn(row, "Path").split("\\|");
                String xp = sheet.getColumn(row, "XPath");
                for (String pi : pl) {
                    String p = pi.trim();
                    ElementDefn e = null;
                    if (Utilities.noString(p))
                        throw new Exception("Search Param " + root2.getName() + "/" + n + ": empty path " + getLocation(row));
                    if (p.startsWith("#")) {
                        // root less extension search parameter
                        StructureDefinition ex = pack.getExtension(prefix + p.substring(1));
                        if (ex == null)
                            throw new Exception("Search Param " + pack.getTitle() + "/" + n + " refers to unknown extension '" + p + "' " + getLocation(row));
                        e = definitions.getElementDefn("Extension");
                        if (ex.getContext().size() != 1 || ex.getContext().get(0).getType() != ExtensionContextType.ELEMENT)
                            throw new Exception("Search Param " + pack.getTitle() + "/" + n + " refers to an extension with multiple contexts, not not an element context - not supported '" + p + "' " + getLocation(row));
                        path = ex.getContext().get(0).getExpression();
                        if (Utilities.noString(path))
                            throw new Exception("Search Param " + pack.getTitle() + "/" + n + " has no path");
                        if (path.contains("."))
                            path = path.substring(0, path.indexOf('.'));
                        sp.setId(pack.getId() + "-" + path + "-" + sp.getName());
                        root2 = definitions.getResourceByName(path);
                        if (root2 == null)
                            throw new Exception("Search Param " + pack.getTitle() + "/" + n + " has an invalid path (resource not found)");
                        if (root2 != null && root2.getSearchParams().containsKey(n))
                            throw new Exception("Search Param " + root2.getName() + "/" + n + ": duplicate name " + getLocation(row));
                        sp.setId(pack.getId() + "-" + path + "-" + sp.getName());
                        pn.add(ex.getContext().get(0).getExpression() + ".extension{" + ex.getUrl() + "}");
                    } else if (p.contains(".extension{")) {
                        String url = extractExtensionUrl(p);
                        // not created yet?
                        StructureDefinition ex = context.fetchResource(StructureDefinition.class, url);
                        if (ex == null)
                            ex = context.getExtensionStructure(null, url);
                        if (ex == null)
                            throw new Exception("Search Param " + pack.getTitle() + "/" + n + " refers to unknown extension '" + url + "' " + getLocation(row));
                        if (Utilities.noString(d))
                            d = ex.getDescription();
                        if (definitions != null)
                            e = definitions.getElementDefn("Extension");
                        pn.add(p);
                    } else if (!p.startsWith("!") && !p.startsWith("Extension{") && root2 != null) {
                        e = root2.getRoot().getElementForPath(p, definitions, "search param", true, true);
                    }
                    if (e == null && Utilities.noString(d))
                        throw new Exception("unable to resolve sarch param " + p);
                    if (e == null)
                        sp.setExpression(p);
                    if (Utilities.noString(d) && e != null)
                        d = e.getShortDefn();
                    if (d == null)
                        throw new Exception("Search Param " + root2.getName() + "/" + n + " has no description " + getLocation(row));
                    if (e != null)
                        pn.add(p);
                    if (sp.getType() == SearchParamType.REFERENCE) {
                    // no check?
                    } else if (e != null && e.typeCode().startsWith("Reference("))
                        throw new Exception("Search Param " + root2.getName() + "/" + n + " wrong type. The search type is " + sp.getType().toCode() + ", but the element type is " + e.typeCode());
                    sp.setDescription(d);
                }
                sp.setXpath(Utilities.noString(xp) ? new XPathQueryGenerator(definitions, log, null).generateXpath(pn, null) : xp);
                sp.setXpathUsage(readSearchXPathUsage(sheet.getColumn(row, "Path Usage"), row));
            }
            sp.setUrl("http://hl7.org/fhir/SearchParameter/" + sp.getId());
            if (definitions != null)
                definitions.addNs(sp.getUrl(), "Search Parameter " + sp.getName(), pack.getId() + ".html#search");
            if (context.getSearchParameter(sp.getUrl()) != null)
                throw new Exception("Duplicated Search Parameter " + sp.getUrl());
            context.cacheResource(sp);
            pack.getSearchParameters().add(sp);
        }
    }
}
Also used : StructureDefinition(org.hl7.fhir.r5.model.StructureDefinition) ArrayList(java.util.ArrayList) ElementDefn(org.hl7.fhir.definitions.model.ElementDefn) XPathQueryGenerator(org.hl7.fhir.definitions.generators.specification.XPathQueryGenerator) CommonSearchParameter(org.hl7.fhir.definitions.model.CommonSearchParameter) SearchParameter(org.hl7.fhir.r5.model.SearchParameter) ResourceDefn(org.hl7.fhir.definitions.model.ResourceDefn) FHIRException(org.hl7.fhir.exceptions.FHIRException)

Aggregations

SearchParameter (org.hl7.fhir.r5.model.SearchParameter)32 FHIRException (org.hl7.fhir.exceptions.FHIRException)13 StructureDefinition (org.hl7.fhir.r5.model.StructureDefinition)13 ArrayList (java.util.ArrayList)12 File (java.io.File)9 DefinitionException (org.hl7.fhir.exceptions.DefinitionException)9 SearchParameter (org.hl7.fhir.r4b.model.SearchParameter)9 CodeType (org.hl7.fhir.r5.model.CodeType)9 HashSet (java.util.HashSet)8 FileOutputStream (java.io.FileOutputStream)7 XmlParser (org.hl7.fhir.r5.formats.XmlParser)7 FileNotFoundException (java.io.FileNotFoundException)6 IOException (java.io.IOException)6 CanonicalResource (org.hl7.fhir.r5.model.CanonicalResource)6 ContactPoint (org.hl7.fhir.r5.model.ContactPoint)6 ImplementationGuide (org.hl7.fhir.r5.model.ImplementationGuide)6 CommaSeparatedStringBuilder (org.hl7.fhir.utilities.CommaSeparatedStringBuilder)6 ConstraintStructure (org.hl7.fhir.definitions.model.ConstraintStructure)5 Example (org.hl7.fhir.definitions.model.Example)5 SearchParameterDefn (org.hl7.fhir.definitions.model.SearchParameterDefn)4